Gchil7059.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7059.t1
Unique Name	Gchil7059.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	672

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000131_pilon	contig	tig00000131_pilon:320378..322393 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708759.1
PFAMs	ABC_membrane_2,ABC_tran,PWWP,SET,zf-HC5HC2H_2
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	4.32e-153
EggNOG OGs	COG4178@1\|root,KOG0060@2759\|Eukaryota
Description	ATP-binding cassette sub-family D
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7059	Gchil7059	Gracilaria chilensis NLEC103_M9 male	gene	tig00000131_pilon 320378..322393 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7059.t1.start1	Gchil7059.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000131_pilon 320378..320380 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7059.t1.CDS1	Gchil7059.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000131_pilon 320378..322393 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7059.t1.exon1	Gchil7059.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000131_pilon 320378..322393 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7059.t1.stop1	Gchil7059.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000131_pilon 322391..322393 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7059.t1	Gchil7059.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000131_pilon 320378..322393 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000131_pilon:320378..322393+
coding sequence from alignment at tig00000131_pilon:320378..322393+

mRNA sequence

>Gchil7059.t1 ID=Gchil7059.t1|Name=Gchil7059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=672bp
MSPSLAFLALTRNEFPSENNRVVAYVPTLRFSVSPAPTSGRSFLLDRSSR
ASRLTLRRPLCRPVRNTRLKVVASAPPIQYEEKKDILSSPDARSVASPNY
RNVLREILVGVRELARPLYGGKLKVTAWLWTAATVLLALAATLYAVMLSM
IQRFFWNSLNARDASKFGKLLLVYGIAVVVGPFVISTFNWIQQRLALMWR
SALTDHLLQQYFANSNYYKLSLGMGDIDNPDQRISEDVMNFTSRAVRFIT
VIGVGLFDLLVFSVLLYKIYKPLLFMLIGYSAIGTIAIGRVGRHLLVLNR
EQASREADYRFGLVRVRDSTENIAFYGGEDSEEKELFQRFGALFRNKISL
LGLKRIVELMSSSFRYWAQIAPTILIAPQYFAGKLPLGALSQVYFSFNHV
LSSLGLVVSEFTALAEFGAGIRRLKGISDALKSDYSPARCISRSEHGIDC
EGAALTLHNVSVYTPTPPHQMLVRNVTLSVERGERLLVVGRSGIGKSSLM
RAISGLWNEGEGSITRPPRGDTLFLPQRAFVMLGSLRDNVIYPSRRRDVT
DDEVVAALKRVNLGYLVERVGLDAAGEALSRSMSLGEQQRLAFSRILISK
PYMVVLDESTSALDMENERDMYGLVRDMGLTCVSVGNRASLVTFHDRVLR
IEGDSAWMVMSAEEYASYAAT*

spliced messenger RNA

>Gchil7059.t1 ID=Gchil7059.t1|Name=Gchil7059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2016bp|location=Sequence derived from alignment at tig00000131_pilon:320378..322393+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCCTCGTTGGCATTTCTTGCCTTGACTCGAAACGAATTCCCATC
CGAGAACAATCGCGTGGTAGCCTATGTCCCTACTTTGCGTTTCTCTGTGT
CGCCAGCGCCAACATCCGGGCGCAGCTTTTTGCTCGATAGAAGTTCCCGT
GCGTCCAGACTAACGCTACGTAGACCACTATGTCGTCCCGTTCGGAATAC
GCGCCTCAAAGTAGTAGCCTCAGCACCGCCGATACAATATGAAGAGAAGA
AGGATATTCTGTCTTCACCCGATGCGCGTTCAGTCGCATCCCCGAACTAT
AGGAACGTTCTACGAGAAATTCTTGTGGGAGTAAGAGAGCTGGCACGCCC
GCTGTATGGGGGGAAACTCAAAGTAACAGCGTGGCTGTGGACGGCGGCTA
CCGTCTTACTGGCCTTGGCAGCCACGTTGTACGCCGTAATGCTCAGTATG
ATTCAGAGGTTCTTTTGGAACAGTTTGAATGCTAGGGACGCGTCCAAATT
CGGAAAGCTGTTGCTTGTGTACGGCATAGCAGTTGTGGTGGGCCCTTTTG
TCATATCTACGTTCAACTGGATCCAACAGAGGCTGGCGCTCATGTGGAGG
AGCGCGCTCACGGATCATCTTTTGCAACAGTACTTTGCCAACAGCAACTA
CTACAAGCTTTCGCTCGGAATGGGCGACATTGACAATCCGGACCAAAGAA
TCTCTGAGGACGTAATGAATTTCACCTCCCGTGCTGTACGATTCATTACT
GTGATTGGAGTGGGCTTGTTTGATCTGCTGGTGTTCTCTGTGTTGCTGTA
CAAGATTTACAAGCCGTTGTTGTTCATGTTGATAGGTTACTCTGCCATTG
GCACGATAGCAATCGGTCGCGTCGGTCGTCATCTGCTGGTTTTGAACCGG
GAACAAGCAAGCAGGGAGGCGGACTATCGTTTCGGGCTGGTTCGTGTGCG
CGACTCGACAGAAAACATTGCCTTTTACGGCGGCGAAGACTCGGAAGAAA
AAGAACTTTTCCAGCGCTTTGGTGCGCTGTTTCGCAACAAGATCAGCCTG
CTCGGTTTGAAGCGAATTGTGGAACTGATGTCTTCATCGTTTCGCTACTG
GGCGCAGATAGCGCCAACGATACTGATAGCGCCGCAATACTTTGCAGGCA
AATTACCGCTCGGCGCTCTGAGCCAGGTATACTTTTCGTTCAACCACGTG
CTGTCGTCGTTGGGGCTGGTGGTGTCCGAGTTTACAGCGCTGGCAGAGTT
TGGGGCCGGGATTCGACGGTTGAAGGGCATTTCAGATGCACTGAAAAGCG
ATTATTCGCCAGCGCGGTGCATAAGCAGAAGCGAACATGGCATCGATTGC
GAGGGTGCCGCGCTAACGTTGCACAATGTATCAGTGTACACGCCAACGCC
CCCGCACCAAATGCTAGTTCGAAACGTGACGCTGAGCGTGGAAAGAGGTG
AGCGGCTGCTGGTGGTAGGGCGGTCGGGCATTGGAAAGAGCTCTCTCATG
CGGGCGATAAGCGGGCTGTGGAACGAGGGGGAAGGGAGCATCACGCGGCC
GCCAAGGGGCGACACGCTGTTTTTGCCTCAACGCGCGTTTGTGATGTTGG
GATCGCTGCGCGACAACGTGATCTACCCGTCGCGACGGCGCGACGTGACG
GACGACGAAGTGGTAGCAGCGTTGAAGCGTGTAAACCTAGGGTATCTGGT
GGAGCGCGTGGGGCTGGATGCGGCGGGCGAAGCGCTGAGCCGCAGCATGA
GCCTCGGCGAGCAGCAGCGACTAGCGTTCTCGAGGATTTTGATCAGCAAG
CCGTACATGGTGGTGCTGGATGAGTCGACGTCGGCGCTGGACATGGAGAA
CGAGCGCGACATGTATGGGCTGGTGCGCGACATGGGGCTGACGTGCGTGA
GTGTGGGGAATCGGGCGTCGTTGGTGACGTTTCACGACCGCGTGTTGCGC
ATCGAGGGCGATAGCGCTTGGATGGTGATGTCGGCGGAAGAGTACGCGTC
ATACGCGGCGACATGA

protein sequence of Gchil7059.t1

>Gchil7059.t1 ID=Gchil7059.t1|Name=Gchil7059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=672bp
MSPSLAFLALTRNEFPSENNRVVAYVPTLRFSVSPAPTSGRSFLLDRSSR
ASRLTLRRPLCRPVRNTRLKVVASAPPIQYEEKKDILSSPDARSVASPNY
RNVLREILVGVRELARPLYGGKLKVTAWLWTAATVLLALAATLYAVMLSM
IQRFFWNSLNARDASKFGKLLLVYGIAVVVGPFVISTFNWIQQRLALMWR
SALTDHLLQQYFANSNYYKLSLGMGDIDNPDQRISEDVMNFTSRAVRFIT
VIGVGLFDLLVFSVLLYKIYKPLLFMLIGYSAIGTIAIGRVGRHLLVLNR
EQASREADYRFGLVRVRDSTENIAFYGGEDSEEKELFQRFGALFRNKISL
LGLKRIVELMSSSFRYWAQIAPTILIAPQYFAGKLPLGALSQVYFSFNHV
LSSLGLVVSEFTALAEFGAGIRRLKGISDALKSDYSPARCISRSEHGIDC
EGAALTLHNVSVYTPTPPHQMLVRNVTLSVERGERLLVVGRSGIGKSSLM
RAISGLWNEGEGSITRPPRGDTLFLPQRAFVMLGSLRDNVIYPSRRRDVT
DDEVVAALKRVNLGYLVERVGLDAAGEALSRSMSLGEQQRLAFSRILISK
PYMVVLDESTSALDMENERDMYGLVRDMGLTCVSVGNRASLVTFHDRVLR
IEGDSAWMVMSAEEYASYAAT*

mRNA from alignment at tig00000131_pilon:320378..322393+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7059.t1 ID=Gchil7059.t1|Name=Gchil7059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2016bp|location=Sequence derived from alignment at tig00000131_pilon:320378..322393+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCCTCGTTGGCATTTCTTGCCTTGACTCGAAACGAATTCCCATC
CGAGAACAATCGCGTGGTAGCCTATGTCCCTACTTTGCGTTTCTCTGTGT
CGCCAGCGCCAACATCCGGGCGCAGCTTTTTGCTCGATAGAAGTTCCCGT
GCGTCCAGACTAACGCTACGTAGACCACTATGTCGTCCCGTTCGGAATAC
GCGCCTCAAAGTAGTAGCCTCAGCACCGCCGATACAATATGAAGAGAAGA
AGGATATTCTGTCTTCACCCGATGCGCGTTCAGTCGCATCCCCGAACTAT
AGGAACGTTCTACGAGAAATTCTTGTGGGAGTAAGAGAGCTGGCACGCCC
GCTGTATGGGGGGAAACTCAAAGTAACAGCGTGGCTGTGGACGGCGGCTA
CCGTCTTACTGGCCTTGGCAGCCACGTTGTACGCCGTAATGCTCAGTATG
ATTCAGAGGTTCTTTTGGAACAGTTTGAATGCTAGGGACGCGTCCAAATT
CGGAAAGCTGTTGCTTGTGTACGGCATAGCAGTTGTGGTGGGCCCTTTTG
TCATATCTACGTTCAACTGGATCCAACAGAGGCTGGCGCTCATGTGGAGG
AGCGCGCTCACGGATCATCTTTTGCAACAGTACTTTGCCAACAGCAACTA
CTACAAGCTTTCGCTCGGAATGGGCGACATTGACAATCCGGACCAAAGAA
TCTCTGAGGACGTAATGAATTTCACCTCCCGTGCTGTACGATTCATTACT
GTGATTGGAGTGGGCTTGTTTGATCTGCTGGTGTTCTCTGTGTTGCTGTA
CAAGATTTACAAGCCGTTGTTGTTCATGTTGATAGGTTACTCTGCCATTG
GCACGATAGCAATCGGTCGCGTCGGTCGTCATCTGCTGGTTTTGAACCGG
GAACAAGCAAGCAGGGAGGCGGACTATCGTTTCGGGCTGGTTCGTGTGCG
CGACTCGACAGAAAACATTGCCTTTTACGGCGGCGAAGACTCGGAAGAAA
AAGAACTTTTCCAGCGCTTTGGTGCGCTGTTTCGCAACAAGATCAGCCTG
CTCGGTTTGAAGCGAATTGTGGAACTGATGTCTTCATCGTTTCGCTACTG
GGCGCAGATAGCGCCAACGATACTGATAGCGCCGCAATACTTTGCAGGCA
AATTACCGCTCGGCGCTCTGAGCCAGGTATACTTTTCGTTCAACCACGTG
CTGTCGTCGTTGGGGCTGGTGGTGTCCGAGTTTACAGCGCTGGCAGAGTT
TGGGGCCGGGATTCGACGGTTGAAGGGCATTTCAGATGCACTGAAAAGCG
ATTATTCGCCAGCGCGGTGCATAAGCAGAAGCGAACATGGCATCGATTGC
GAGGGTGCCGCGCTAACGTTGCACAATGTATCAGTGTACACGCCAACGCC
CCCGCACCAAATGCTAGTTCGAAACGTGACGCTGAGCGTGGAAAGAGGTG
AGCGGCTGCTGGTGGTAGGGCGGTCGGGCATTGGAAAGAGCTCTCTCATG
CGGGCGATAAGCGGGCTGTGGAACGAGGGGGAAGGGAGCATCACGCGGCC
GCCAAGGGGCGACACGCTGTTTTTGCCTCAACGCGCGTTTGTGATGTTGG
GATCGCTGCGCGACAACGTGATCTACCCGTCGCGACGGCGCGACGTGACG
GACGACGAAGTGGTAGCAGCGTTGAAGCGTGTAAACCTAGGGTATCTGGT
GGAGCGCGTGGGGCTGGATGCGGCGGGCGAAGCGCTGAGCCGCAGCATGA
GCCTCGGCGAGCAGCAGCGACTAGCGTTCTCGAGGATTTTGATCAGCAAG
CCGTACATGGTGGTGCTGGATGAGTCGACGTCGGCGCTGGACATGGAGAA
CGAGCGCGACATGTATGGGCTGGTGCGCGACATGGGGCTGACGTGCGTGA
GTGTGGGGAATCGGGCGTCGTTGGTGACGTTTCACGACCGCGTGTTGCGC
ATCGAGGGCGATAGCGCTTGGATGGTGATGTCGGCGGAAGAGTACGCGTC
ATACGCGGCGACATGA

Coding sequence (CDS) from alignment at tig00000131_pilon:320378..322393+

>Gchil7059.t1 ID=Gchil7059.t1|Name=Gchil7059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2016bp|location=Sequence derived from alignment at tig00000131_pilon:320378..322393+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCCTCGTTGGCATTTCTTGCCTTGACTCGAAACGAATTCCCATC
CGAGAACAATCGCGTGGTAGCCTATGTCCCTACTTTGCGTTTCTCTGTGT
CGCCAGCGCCAACATCCGGGCGCAGCTTTTTGCTCGATAGAAGTTCCCGT
GCGTCCAGACTAACGCTACGTAGACCACTATGTCGTCCCGTTCGGAATAC
GCGCCTCAAAGTAGTAGCCTCAGCACCGCCGATACAATATGAAGAGAAGA
AGGATATTCTGTCTTCACCCGATGCGCGTTCAGTCGCATCCCCGAACTAT
AGGAACGTTCTACGAGAAATTCTTGTGGGAGTAAGAGAGCTGGCACGCCC
GCTGTATGGGGGGAAACTCAAAGTAACAGCGTGGCTGTGGACGGCGGCTA
CCGTCTTACTGGCCTTGGCAGCCACGTTGTACGCCGTAATGCTCAGTATG
ATTCAGAGGTTCTTTTGGAACAGTTTGAATGCTAGGGACGCGTCCAAATT
CGGAAAGCTGTTGCTTGTGTACGGCATAGCAGTTGTGGTGGGCCCTTTTG
TCATATCTACGTTCAACTGGATCCAACAGAGGCTGGCGCTCATGTGGAGG
AGCGCGCTCACGGATCATCTTTTGCAACAGTACTTTGCCAACAGCAACTA
CTACAAGCTTTCGCTCGGAATGGGCGACATTGACAATCCGGACCAAAGAA
TCTCTGAGGACGTAATGAATTTCACCTCCCGTGCTGTACGATTCATTACT
GTGATTGGAGTGGGCTTGTTTGATCTGCTGGTGTTCTCTGTGTTGCTGTA
CAAGATTTACAAGCCGTTGTTGTTCATGTTGATAGGTTACTCTGCCATTG
GCACGATAGCAATCGGTCGCGTCGGTCGTCATCTGCTGGTTTTGAACCGG
GAACAAGCAAGCAGGGAGGCGGACTATCGTTTCGGGCTGGTTCGTGTGCG
CGACTCGACAGAAAACATTGCCTTTTACGGCGGCGAAGACTCGGAAGAAA
AAGAACTTTTCCAGCGCTTTGGTGCGCTGTTTCGCAACAAGATCAGCCTG
CTCGGTTTGAAGCGAATTGTGGAACTGATGTCTTCATCGTTTCGCTACTG
GGCGCAGATAGCGCCAACGATACTGATAGCGCCGCAATACTTTGCAGGCA
AATTACCGCTCGGCGCTCTGAGCCAGGTATACTTTTCGTTCAACCACGTG
CTGTCGTCGTTGGGGCTGGTGGTGTCCGAGTTTACAGCGCTGGCAGAGTT
TGGGGCCGGGATTCGACGGTTGAAGGGCATTTCAGATGCACTGAAAAGCG
ATTATTCGCCAGCGCGGTGCATAAGCAGAAGCGAACATGGCATCGATTGC
GAGGGTGCCGCGCTAACGTTGCACAATGTATCAGTGTACACGCCAACGCC
CCCGCACCAAATGCTAGTTCGAAACGTGACGCTGAGCGTGGAAAGAGGTG
AGCGGCTGCTGGTGGTAGGGCGGTCGGGCATTGGAAAGAGCTCTCTCATG
CGGGCGATAAGCGGGCTGTGGAACGAGGGGGAAGGGAGCATCACGCGGCC
GCCAAGGGGCGACACGCTGTTTTTGCCTCAACGCGCGTTTGTGATGTTGG
GATCGCTGCGCGACAACGTGATCTACCCGTCGCGACGGCGCGACGTGACG
GACGACGAAGTGGTAGCAGCGTTGAAGCGTGTAAACCTAGGGTATCTGGT
GGAGCGCGTGGGGCTGGATGCGGCGGGCGAAGCGCTGAGCCGCAGCATGA
GCCTCGGCGAGCAGCAGCGACTAGCGTTCTCGAGGATTTTGATCAGCAAG
CCGTACATGGTGGTGCTGGATGAGTCGACGTCGGCGCTGGACATGGAGAA
CGAGCGCGACATGTATGGGCTGGTGCGCGACATGGGGCTGACGTGCGTGA
GTGTGGGGAATCGGGCGTCGTTGGTGACGTTTCACGACCGCGTGTTGCGC
ATCGAGGGCGATAGCGCTTGGATGGTGATGTCGGCGGAAGAGTACGCGTC
ATACGCGGCGACATGA