Gchil6957.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6957.t1
Unique NameGchil6957.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004398_piloncontigtig00004398_pilon:345855..346636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6957Gchil6957Gracilaria chilensis NLEC103_M9 malegenetig00004398_pilon 345855..346636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6957.t1Gchil6957.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004398_pilon 345855..346636 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6957.t1.stop1Gchil6957.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004398_pilon 345855..345857 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6957.t1.CDS1Gchil6957.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004398_pilon 345855..345986 -
Gchil6957.t1.CDS2Gchil6957.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004398_pilon 346091..346636 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6957.t1.exon1Gchil6957.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004398_pilon 345855..345986 -
Gchil6957.t1.exon2Gchil6957.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004398_pilon 346091..346636 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6957.t1.intron1Gchil6957.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004398_pilon 345987..346090 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6957.t1.start1Gchil6957.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004398_pilon 346634..346636 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6957.t1 ID=Gchil6957.t1|Name=Gchil6957.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=226bp
MSFFKKRFTVFGRKTVFAKDEAIVEVIMKEFTIQDSNARCDGDSVSDAED
VGPPLGDRRVDVFVPQYEVAENRARIGSCCTVVIWNRVQFDYAVSLLSAG
LSFRQISKVVKDNRDRLGAAGTIGCVCKGDASKFAPITCVFGLQILDDMM
WHNCAYSLATAVSTNDFGNSHLDVRIRIPGIGLFPAWEEKIIGLSGDGLS
NTTGYNIGLSTGLSKVFIGGKLFGV*
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spliced messenger RNA

>Gchil6957.t1 ID=Gchil6957.t1|Name=Gchil6957.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00004398_pilon:345855..346636- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTTTTTCAAGAAGCGCTTTACGGTTTTTGGGCGCAAGACCGTCTT
CGCGAAAGACGAGGCAATCGTCGAAGTGATTATGAAAGAGTTCACGATTC
AAGACTCGAACGCGCGGTGTGACGGTGACTCAGTGTCGGACGCTGAAGAC
GTCGGGCCTCCACTCGGAGATCGTAGGGTCGATGTATTCGTGCCGCAGTA
CGAGGTCGCCGAGAACAGAGCCAGGATCGGGTCATGCTGTACTGTCGTGA
TTTGGAATCGCGTGCAGTTCGACTACGCCGTATCGCTTCTCAGCGCCGGC
CTATCATTTCGCCAAATATCAAAAGTTGTTAAAGATAACCGAGACCGACT
TGGCGCCGCTGGCACAATTGGTTGTGTTTGTAAGGGAGACGCTTCAAAGT
TTGCGCCCATCACCTGCGTATTCGGCCTTCAGATCCTCGATGACATGATG
TGGCACAATTGCGCGTACTCCCTGGCGACCGCTGTGTCGACGAACGACTT
CGGAAATTCTCATCTTGACGTCCGCATTCGCATACCCGGTATCGGCCTTT
TTCCGGCGTGGGAGGAGAAGATTATCGGATTGTCTGGAGACGGCCTCTCG
AACACGACAGGGTACAACATTGGACTTTCCACAGGGCTTTCCAAGGTTTT
CATTGGCGGAAAGCTCTTTGGCGTGTAG
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protein sequence of Gchil6957.t1

>Gchil6957.t1 ID=Gchil6957.t1|Name=Gchil6957.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=226bp
MSFFKKRFTVFGRKTVFAKDEAIVEVIMKEFTIQDSNARCDGDSVSDAED
VGPPLGDRRVDVFVPQYEVAENRARIGSCCTVVIWNRVQFDYAVSLLSAG
LSFRQISKVVKDNRDRLGAAGTIGCVCKGDASKFAPITCVFGLQILDDMM
WHNCAYSLATAVSTNDFGNSHLDVRIRIPGIGLFPAWEEKIIGLSGDGLS
NTTGYNIGLSTGLSKVFIGGKLFGV*
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mRNA from alignment at tig00004398_pilon:345855..346636-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6957.t1 ID=Gchil6957.t1|Name=Gchil6957.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=782bp|location=Sequence derived from alignment at tig00004398_pilon:345855..346636- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTTTTCAAGAAGCGCTTTACGGTTTTTGGGCGCAAGACCGTCTT
CGCGAAAGACGAGGCAATCGTCGAAGTGATTATGAAAGAGTTCACGATTC
AAGACTCGAACGCGCGGTGTGACGGTGACTCAGTGTCGGACGCTGAAGAC
GTCGGGCCTCCACTCGGAGATCGTAGGGTCGATGTATTCGTGCCGCAGTA
CGAGGTCGCCGAGAACAGAGCCAGGATCGGGTCATGCTGTACTGTCGTGA
TTTGGAATCGCGTGCAGTTCGACTACGCCGTATCGCTTCTCAGCGCCGGC
CTATCATTTCGCCAAATATCAAAAGTTGTTAAAGATAACCGAGACCGACT
TGGCGCCGCTGGCACAATTGGTTGTGTTTGTAAGGGAGACGCTTCAAAGT
TTGCGCCCATCACCTGCGTATTCGGCCTTCAGATCCTCGATGACATGATG
TGGCACAATTGCGCGTACTCCCTGGCGACCGCTGTGTCGACGAACGACTT
CGGAAATTCTCATCTTGACGTCCGCATTCGCATACCCGGTATCGGCGTAG
CCGACAATCAGCGGTCGTTTCATCTTTTGGCGATTCCTCTTTCGAGGCGT
CACAAAGTGGCATCTCACTCTTTACTATATTCTCTAAGGTTTTTGATAAG
CTTTTTCCGGCGTGGGAGGAGAAGATTATCGGATTGTCTGGAGACGGCCT
CTCGAACACGACAGGGTACAACATTGGACTTTCCACAGGGCTTTCCAAGG
TTTTCATTGGCGGAAAGCTCTTTGGCGTGTAG
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Coding sequence (CDS) from alignment at tig00004398_pilon:345855..346636-

>Gchil6957.t1 ID=Gchil6957.t1|Name=Gchil6957.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00004398_pilon:345855..346636- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTTTTCAAGAAGCGCTTTACGGTTTTTGGGCGCAAGACCGTCTT
CGCGAAAGACGAGGCAATCGTCGAAGTGATTATGAAAGAGTTCACGATTC
AAGACTCGAACGCGCGGTGTGACGGTGACTCAGTGTCGGACGCTGAAGAC
GTCGGGCCTCCACTCGGAGATCGTAGGGTCGATGTATTCGTGCCGCAGTA
CGAGGTCGCCGAGAACAGAGCCAGGATCGGGTCATGCTGTACTGTCGTGA
TTTGGAATCGCGTGCAGTTCGACTACGCCGTATCGCTTCTCAGCGCCGGC
CTATCATTTCGCCAAATATCAAAAGTTGTTAAAGATAACCGAGACCGACT
TGGCGCCGCTGGCACAATTGGTTGTGTTTGTAAGGGAGACGCTTCAAAGT
TTGCGCCCATCACCTGCGTATTCGGCCTTCAGATCCTCGATGACATGATG
TGGCACAATTGCGCGTACTCCCTGGCGACCGCTGTGTCGACGAACGACTT
CGGAAATTCTCATCTTGACGTCCGCATTCGCATACCCGGTATCGGCCTTT
TTCCGGCGTGGGAGGAGAAGATTATCGGATTGTCTGGAGACGGCCTCTCG
AACACGACAGGGTACAACATTGGACTTTCCACAGGGCTTTCCAAGGTTTT
CATTGGCGGAAAGCTCTTTGGCGTGTAG
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