Gchil6871.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6871.t1
Unique NameGchil6871.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length124
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:477564..477935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7029.ACYPI33219-PA
PFAMsBaculo_F,RVT_1,rve
Max annot lvl33208|Metazoa
Evalue4.89e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,41WI3@6656|Arthropoda,3SIRK@50557|Insecta,3ECJT@33342|Paraneoptera
DescriptionK02A2.6-like
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6871Gchil6871Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 477564..477935 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6871.t1.stop1Gchil6871.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 477564..477566 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6871.t1.CDS1Gchil6871.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 477564..477935 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6871.t1.exon1Gchil6871.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 477564..477935 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6871.t1.start1Gchil6871.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 477933..477935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6871.t1Gchil6871.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 477564..477935 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6871.t1 ID=Gchil6871.t1|Name=Gchil6871.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=124bp
MTDASSRLARWRLRLSEYDYDIIYGPGIKHQAADALSRIITDRTDDTPLD
DPIPTPFKDCGPQDCTETDDLMGKVQSEDPEVKKNEVYLLDWETVPPNSA
RPPVNAITPEEKELLPITIEELL*
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spliced messenger RNA

>Gchil6871.t1 ID=Gchil6871.t1|Name=Gchil6871.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=372bp|location=Sequence derived from alignment at tig00004376_pilon:477564..477935- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGATGCATCGAGTCGCCTCGCGAGGTGGCGCCTCAGGCTGTCAGA
ATATGACTACGACATAATCTATGGGCCAGGCATCAAGCACCAGGCAGCAG
ATGCCCTGTCGCGAATCATTACCGACAGAACTGATGACACCCCATTGGAC
GACCCAATTCCCACCCCCTTTAAAGATTGTGGACCTCAGGACTGCACGGA
AACAGATGACCTTATGGGTAAGGTGCAATCGGAGGATCCTGAGGTAAAGA
AGAACGAAGTATACCTATTGGACTGGGAGACAGTACCGCCCAATTCGGCA
CGACCTCCGGTTAATGCGATAACCCCGGAGGAAAAAGAACTCCTCCCTAT
AACTATTGAGGAACTTCTATAG
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protein sequence of Gchil6871.t1

>Gchil6871.t1 ID=Gchil6871.t1|Name=Gchil6871.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=124bp
MTDASSRLARWRLRLSEYDYDIIYGPGIKHQAADALSRIITDRTDDTPLD
DPIPTPFKDCGPQDCTETDDLMGKVQSEDPEVKKNEVYLLDWETVPPNSA
RPPVNAITPEEKELLPITIEELL*
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mRNA from alignment at tig00004376_pilon:477564..477935-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6871.t1 ID=Gchil6871.t1|Name=Gchil6871.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=372bp|location=Sequence derived from alignment at tig00004376_pilon:477564..477935- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGATGCATCGAGTCGCCTCGCGAGGTGGCGCCTCAGGCTGTCAGA
ATATGACTACGACATAATCTATGGGCCAGGCATCAAGCACCAGGCAGCAG
ATGCCCTGTCGCGAATCATTACCGACAGAACTGATGACACCCCATTGGAC
GACCCAATTCCCACCCCCTTTAAAGATTGTGGACCTCAGGACTGCACGGA
AACAGATGACCTTATGGGTAAGGTGCAATCGGAGGATCCTGAGGTAAAGA
AGAACGAAGTATACCTATTGGACTGGGAGACAGTACCGCCCAATTCGGCA
CGACCTCCGGTTAATGCGATAACCCCGGAGGAAAAAGAACTCCTCCCTAT
AACTATTGAGGAACTTCTATAG
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Coding sequence (CDS) from alignment at tig00004376_pilon:477564..477935-

>Gchil6871.t1 ID=Gchil6871.t1|Name=Gchil6871.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=372bp|location=Sequence derived from alignment at tig00004376_pilon:477564..477935- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGATGCATCGAGTCGCCTCGCGAGGTGGCGCCTCAGGCTGTCAGA
ATATGACTACGACATAATCTATGGGCCAGGCATCAAGCACCAGGCAGCAG
ATGCCCTGTCGCGAATCATTACCGACAGAACTGATGACACCCCATTGGAC
GACCCAATTCCCACCCCCTTTAAAGATTGTGGACCTCAGGACTGCACGGA
AACAGATGACCTTATGGGTAAGGTGCAATCGGAGGATCCTGAGGTAAAGA
AGAACGAAGTATACCTATTGGACTGGGAGACAGTACCGCCCAATTCGGCA
CGACCTCCGGTTAATGCGATAACCCCGGAGGAAAAAGAACTCCTCCCTAT
AACTATTGAGGAACTTCTATAG
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