Gchil6835.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6835.t2
Unique Name	Gchil6835.t2
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	247

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004376_pilon	contig	tig00004376_pilon:232804..233544 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	529818.AMSG_02935T0
Preferred name	GINS4
PFAMs	SLD5_C,Sld5
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10735
KEGG Module	M00286
GOs	GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000811,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010564,GO:0022616,GO:0031261,GO:0031298,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0032993,GO:0033554,GO:0034641,GO:0034645,GO:0040007,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045787,GO:0045931,GO:0046483,GO:0048518,GO:0048522,GO:0048589,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0071704,GO:0090068,GO:0090304,GO:1900087,GO:1901360,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:2000045
Evalue	4.36e-25
EggNOG OGs	COG5086@1\|root,KOG3176@2759\|Eukaryota
Description	double-strand break repair via break-induced replication
COG category	L
BRITE	ko00000,ko00002,ko03032

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6835	Gchil6835	Gracilaria chilensis NLEC103_M9 male	gene	tig00004376_pilon 232804..233544 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6835.t2.start1	Gchil6835.t2.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004376_pilon 232804..232806 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6835.t2.CDS1	Gchil6835.t2.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004376_pilon 232804..233544 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6835.t2.exon1	Gchil6835.t2.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004376_pilon 232804..233544 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6835.t2.stop1	Gchil6835.t2.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004376_pilon 233542..233544 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6835.t2	Gchil6835.t2	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004376_pilon 232804..233544 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004376_pilon:232804..233544+
coding sequence from alignment at tig00004376_pilon:232804..233544+

mRNA sequence

>Gchil6835.t2 ID=Gchil6835.t2|Name=Gchil6835.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=247bp
MSSYSDHGDEIPRFSFGSMALSQEQAGHTQTRLPNALEGENPSQPGLNEA
IDRMVMLARNEQFSPGILPHEFQTIQVIQALIKQQSDLVDDEDDTNANVS
LESQLKRLEIDRINYTLRHYFRVRIKKIEENILFIFKNSSMLNDLSEAEN
RYASGYRNLLEDHFKKSFLSMLPLKIQVIEKDGSVDHDSGPNLDRFVFCR
VRSNVGRIAVGEDSTSDAMNLNQNDILCVRYNSISELLQSEDVELL*

spliced messenger RNA

>Gchil6835.t2 ID=Gchil6835.t2|Name=Gchil6835.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00004376_pilon:232804..233544+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCATATTCAGATCATGGTGATGAGATCCCCCGATTTTCCTTCGG
ATCGATGGCGCTCTCTCAGGAGCAAGCTGGTCATACACAAACGCGACTTC
CAAACGCTTTAGAAGGCGAGAATCCATCACAGCCTGGTCTCAATGAGGCT
ATTGACAGGATGGTTATGCTAGCACGAAACGAGCAATTTAGTCCGGGGAT
CCTTCCTCATGAATTTCAAACGATACAGGTTATACAGGCACTTATAAAGC
AGCAATCGGATCTTGTTGATGATGAAGATGACACCAACGCCAATGTTTCA
CTCGAATCCCAGCTTAAAAGACTCGAAATAGATCGAATTAACTACACTCT
GCGCCACTACTTCCGGGTGCGCATAAAGAAGATTGAGGAGAACATACTTT
TTATATTCAAGAATTCGAGCATGCTTAACGACTTGTCTGAAGCCGAAAAC
AGGTACGCATCGGGTTACAGGAATTTGTTGGAAGATCATTTCAAGAAGTC
ATTCTTATCCATGCTACCTCTAAAAATTCAAGTCATTGAAAAAGATGGTT
CCGTTGACCACGACAGTGGCCCCAATTTGGATCGGTTTGTGTTCTGCCGT
GTCCGAAGCAATGTGGGTCGCATCGCTGTTGGGGAGGATTCCACAAGCGA
TGCGATGAATCTAAACCAAAACGATATTCTTTGCGTGCGATACAACAGCA
TTTCGGAACTCCTGCAGAGCGAGGACGTAGAGTTGCTCTAG

protein sequence of Gchil6835.t2

>Gchil6835.t2 ID=Gchil6835.t2|Name=Gchil6835.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=247bp
MSSYSDHGDEIPRFSFGSMALSQEQAGHTQTRLPNALEGENPSQPGLNEA
IDRMVMLARNEQFSPGILPHEFQTIQVIQALIKQQSDLVDDEDDTNANVS
LESQLKRLEIDRINYTLRHYFRVRIKKIEENILFIFKNSSMLNDLSEAEN
RYASGYRNLLEDHFKKSFLSMLPLKIQVIEKDGSVDHDSGPNLDRFVFCR
VRSNVGRIAVGEDSTSDAMNLNQNDILCVRYNSISELLQSEDVELL*

mRNA from alignment at tig00004376_pilon:232804..233544+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6835.t2 ID=Gchil6835.t2|Name=Gchil6835.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00004376_pilon:232804..233544+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCATATTCAGATCATGGTGATGAGATCCCCCGATTTTCCTTCGG
ATCGATGGCGCTCTCTCAGGAGCAAGCTGGTCATACACAAACGCGACTTC
CAAACGCTTTAGAAGGCGAGAATCCATCACAGCCTGGTCTCAATGAGGCT
ATTGACAGGATGGTTATGCTAGCACGAAACGAGCAATTTAGTCCGGGGAT
CCTTCCTCATGAATTTCAAACGATACAGGTTATACAGGCACTTATAAAGC
AGCAATCGGATCTTGTTGATGATGAAGATGACACCAACGCCAATGTTTCA
CTCGAATCCCAGCTTAAAAGACTCGAAATAGATCGAATTAACTACACTCT
GCGCCACTACTTCCGGGTGCGCATAAAGAAGATTGAGGAGAACATACTTT
TTATATTCAAGAATTCGAGCATGCTTAACGACTTGTCTGAAGCCGAAAAC
AGGTACGCATCGGGTTACAGGAATTTGTTGGAAGATCATTTCAAGAAGTC
ATTCTTATCCATGCTACCTCTAAAAATTCAAGTCATTGAAAAAGATGGTT
CCGTTGACCACGACAGTGGCCCCAATTTGGATCGGTTTGTGTTCTGCCGT
GTCCGAAGCAATGTGGGTCGCATCGCTGTTGGGGAGGATTCCACAAGCGA
TGCGATGAATCTAAACCAAAACGATATTCTTTGCGTGCGATACAACAGCA
TTTCGGAACTCCTGCAGAGCGAGGACGTAGAGTTGCTCTAG

Coding sequence (CDS) from alignment at tig00004376_pilon:232804..233544+

>Gchil6835.t2 ID=Gchil6835.t2|Name=Gchil6835.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00004376_pilon:232804..233544+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCATATTCAGATCATGGTGATGAGATCCCCCGATTTTCCTTCGG
ATCGATGGCGCTCTCTCAGGAGCAAGCTGGTCATACACAAACGCGACTTC
CAAACGCTTTAGAAGGCGAGAATCCATCACAGCCTGGTCTCAATGAGGCT
ATTGACAGGATGGTTATGCTAGCACGAAACGAGCAATTTAGTCCGGGGAT
CCTTCCTCATGAATTTCAAACGATACAGGTTATACAGGCACTTATAAAGC
AGCAATCGGATCTTGTTGATGATGAAGATGACACCAACGCCAATGTTTCA
CTCGAATCCCAGCTTAAAAGACTCGAAATAGATCGAATTAACTACACTCT
GCGCCACTACTTCCGGGTGCGCATAAAGAAGATTGAGGAGAACATACTTT
TTATATTCAAGAATTCGAGCATGCTTAACGACTTGTCTGAAGCCGAAAAC
AGGTACGCATCGGGTTACAGGAATTTGTTGGAAGATCATTTCAAGAAGTC
ATTCTTATCCATGCTACCTCTAAAAATTCAAGTCATTGAAAAAGATGGTT
CCGTTGACCACGACAGTGGCCCCAATTTGGATCGGTTTGTGTTCTGCCGT
GTCCGAAGCAATGTGGGTCGCATCGCTGTTGGGGAGGATTCCACAAGCGA
TGCGATGAATCTAAACCAAAACGATATTCTTTGCGTGCGATACAACAGCA
TTTCGGAACTCCTGCAGAGCGAGGACGTAGAGTTGCTCTAG