Gchil6810.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6810.t1
Unique NameGchil6810.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1311542..1312360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4432.XP_010267025.1
PFAMsOxidored_q6
Max annot lvl35493|Streptophyta
KEGG rclassRC00061
KEGG koko:K03940
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0008270,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0046872,GO:0046914,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
Evalue2.9e-92
EggNOG OGsCOG0377@1|root,KOG1687@2759|Eukaryota,37Q4V@33090|Viridiplantae,3G8QP@35493|Streptophyta
EC1.6.5.3,1.6.99.3
DescriptionBelongs to the complex I 20 kDa subunit family
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6810Gchil6810Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1311542..1312360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6810.t1Gchil6810.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1311542..1312360 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6810.t1.stop1Gchil6810.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1311542..1311544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6810.t1.CDS1Gchil6810.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1311542..1311551 -
Gchil6810.t1.CDS2Gchil6810.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1311672..1312213 -
Gchil6810.t1.CDS3Gchil6810.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1312295..1312360 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6810.t1.exon1Gchil6810.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1311542..1311551 -
Gchil6810.t1.exon2Gchil6810.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1311672..1312213 -
Gchil6810.t1.exon3Gchil6810.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1312295..1312360 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6810.t1.intron1Gchil6810.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 1311552..1311671 -
Gchil6810.t1.intron2Gchil6810.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 1312214..1312294 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6810.t1.start1Gchil6810.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1312358..1312360 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6810.t1 ID=Gchil6810.t1|Name=Gchil6810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=206bp
MSAQTLQQVVRAAALISRIQPKGAGLSEISSSAALSRHAAAPSLVFSRTV
HSSSARDSKIAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLAC
CAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVY
DQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE
ALLCT*
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spliced messenger RNA

>Gchil6810.t1 ID=Gchil6810.t1|Name=Gchil6810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00004416_pilon:1311542..1312360- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCCAAACACTGCAACAGGTCGTCCGCGCTGCCGCGCTCATCTC
TCGTATACAGCCGAAGGGTGCCGGTCTATCCGAAATTTCCTCCTCCGCTG
CACTTTCTCGCCATGCCGCCGCACCTTCTCTCGTATTCTCTCGCACCGTG
CATTCCAGCTCCGCTCGCGATAGCAAAATCGCTCATCTCAAGGGCATGCA
ACCATCCAACCGCGCTGAATACGTTGTCACCAAACTGGATGACCTTGTCA
ACTGGGCACGAAATAACTCTTTATGGCCCATGACTTTTGGTCTTGCTTGT
TGTGCTGTGGAAATGATGCAGGCAGGTGCGTCGCGCTATGATCTCGATCG
CTTCGGCTTTCTCTTCCGCCCATCTCCACGGCAGTCTGATTGCATGATTG
TGGCTGGTACCCTCACTAATAAGATGGCCCCTGCCCTAAGGAAGGTGTAT
GATCAGATGCCGGAGCCTCGATGGGTCATCTCAATGGGAAGCTGTGCCAA
TGGAGGCGGATATTACCACTACTCTTATTCCGTTGTTCGAGGTTGTGACC
GCATTGTGCCAGTTGATATCTACGTCCCCGGATGTCCGCCCACGGCTGAA
GCCTTGCTATGTACGTAG
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protein sequence of Gchil6810.t1

>Gchil6810.t1 ID=Gchil6810.t1|Name=Gchil6810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=206bp
MSAQTLQQVVRAAALISRIQPKGAGLSEISSSAALSRHAAAPSLVFSRTV
HSSSARDSKIAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLAC
CAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVY
DQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE
ALLCT*
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mRNA from alignment at tig00004416_pilon:1311542..1312360-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6810.t1 ID=Gchil6810.t1|Name=Gchil6810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00004416_pilon:1311542..1312360- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCCCAAACACTGCAACAGGTCGTCCGCGCTGCCGCGCTCATCTC
TCGTATACAGCCGAAGGTAAGCAGCAACATCCAATCCATGTCAGCCGCAA
CCATCAATTTCCCCGCCTAACATGAAGCACCACCTCTGCCTCTCCAGGGT
GCCGGTCTATCCGAAATTTCCTCCTCCGCTGCACTTTCTCGCCATGCCGC
CGCACCTTCTCTCGTATTCTCTCGCACCGTGCATTCCAGCTCCGCTCGCG
ATAGCAAAATCGCTCATCTCAAGGGCATGCAACCATCCAACCGCGCTGAA
TACGTTGTCACCAAACTGGATGACCTTGTCAACTGGGCACGAAATAACTC
TTTATGGCCCATGACTTTTGGTCTTGCTTGTTGTGCTGTGGAAATGATGC
AGGCAGGTGCGTCGCGCTATGATCTCGATCGCTTCGGCTTTCTCTTCCGC
CCATCTCCACGGCAGTCTGATTGCATGATTGTGGCTGGTACCCTCACTAA
TAAGATGGCCCCTGCCCTAAGGAAGGTGTATGATCAGATGCCGGAGCCTC
GATGGGTCATCTCAATGGGAAGCTGTGCCAATGGAGGCGGATATTACCAC
TACTCTTATTCCGTTGTTCGAGGTTGTGACCGCATTGTGCCAGTTGATAT
CTACGTCCCCGGATGTCCGCCCACGGCTGAAGCCTTGCTGTAAGTTCATA
TTTTACTGGGCCCAATCCGCTTCATATTCAATCGTACCAGAGAGAAATCG
CGGGGTAACTAACTTTGACCTGTGCGTTTCCAACGTTGTTGCATTTCATC
ATCATCCAGATGTACGTAG
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Coding sequence (CDS) from alignment at tig00004416_pilon:1311542..1312360-

>Gchil6810.t1 ID=Gchil6810.t1|Name=Gchil6810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=618bp|location=Sequence derived from alignment at tig00004416_pilon:1311542..1312360- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCCCAAACACTGCAACAGGTCGTCCGCGCTGCCGCGCTCATCTC
TCGTATACAGCCGAAGGGTGCCGGTCTATCCGAAATTTCCTCCTCCGCTG
CACTTTCTCGCCATGCCGCCGCACCTTCTCTCGTATTCTCTCGCACCGTG
CATTCCAGCTCCGCTCGCGATAGCAAAATCGCTCATCTCAAGGGCATGCA
ACCATCCAACCGCGCTGAATACGTTGTCACCAAACTGGATGACCTTGTCA
ACTGGGCACGAAATAACTCTTTATGGCCCATGACTTTTGGTCTTGCTTGT
TGTGCTGTGGAAATGATGCAGGCAGGTGCGTCGCGCTATGATCTCGATCG
CTTCGGCTTTCTCTTCCGCCCATCTCCACGGCAGTCTGATTGCATGATTG
TGGCTGGTACCCTCACTAATAAGATGGCCCCTGCCCTAAGGAAGGTGTAT
GATCAGATGCCGGAGCCTCGATGGGTCATCTCAATGGGAAGCTGTGCCAA
TGGAGGCGGATATTACCACTACTCTTATTCCGTTGTTCGAGGTTGTGACC
GCATTGTGCCAGTTGATATCTACGTCCCCGGATGTCCGCCCACGGCTGAA
GCCTTGCTATGTACGTAG
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