Gchil6735.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6735.t1
Unique NameGchil6735.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:693194..693646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr26293
PFAMsPsbU
Max annot lvl2836|Bacillariophyta
KEGG koko:K02719
KEGG Pathwayko00195,ko01100,map00195,map01100
Evalue4.53e-37
EggNOG OGs2D3K6@1|root,2S50I@2759|Eukaryota,2XCT3@2836|Bacillariophyta
DescriptionPhotosystem II 12 kDa extrinsic protein (PsbU)
COG categoryS
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6735Gchil6735Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 693194..693646 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6735.t1.stop1Gchil6735.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 693194..693196 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6735.t1.CDS1Gchil6735.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 693194..693646 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6735.t1.exon1Gchil6735.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 693194..693646 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6735.t1.start1Gchil6735.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 693644..693646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6735.t1Gchil6735.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 693194..693646 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6735.t1 ID=Gchil6735.t1|Name=Gchil6735.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=151bp
MAFVTGPALPAARPSTVSVRHVCMAADSQPPKLSRRQLITRALAAAALVS
LPSASRAEREYPNVGFLGGSDIIDINNANVRAYQKFRGFYPTLAGLIASN
GPYSSVDDLYELPGLTDAMKASLDEYKEKLVALRPTPEYVIDKINNGLYR
*
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spliced messenger RNA

>Gchil6735.t1 ID=Gchil6735.t1|Name=Gchil6735.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=453bp|location=Sequence derived from alignment at tig00004416_pilon:693194..693646- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTTGTAACCGGACCAGCCCTCCCCGCCGCGCGCCCGTCCACCGT
CTCCGTGCGCCACGTCTGCATGGCCGCCGACTCGCAGCCACCCAAACTCT
CCCGCCGCCAGCTCATCACACGCGCCCTTGCCGCCGCCGCTCTGGTCTCG
CTTCCATCCGCCTCGCGCGCCGAGCGCGAGTACCCCAACGTAGGTTTTCT
AGGCGGAAGTGATATTATCGACATCAACAACGCAAACGTACGCGCCTATC
AGAAGTTCCGCGGCTTTTACCCAACCCTCGCTGGCCTCATCGCGTCGAAC
GGGCCCTACTCCTCTGTCGACGATCTGTATGAACTGCCGGGTCTCACTGA
CGCTATGAAGGCTTCTTTGGATGAGTACAAGGAGAAGCTGGTTGCCTTGA
GGCCTACACCCGAGTACGTTATTGACAAGATCAACAATGGATTATACCGC
TAA
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protein sequence of Gchil6735.t1

>Gchil6735.t1 ID=Gchil6735.t1|Name=Gchil6735.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=151bp
MAFVTGPALPAARPSTVSVRHVCMAADSQPPKLSRRQLITRALAAAALVS
LPSASRAEREYPNVGFLGGSDIIDINNANVRAYQKFRGFYPTLAGLIASN
GPYSSVDDLYELPGLTDAMKASLDEYKEKLVALRPTPEYVIDKINNGLYR
*
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mRNA from alignment at tig00004416_pilon:693194..693646-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6735.t1 ID=Gchil6735.t1|Name=Gchil6735.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=453bp|location=Sequence derived from alignment at tig00004416_pilon:693194..693646- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTTGTAACCGGACCAGCCCTCCCCGCCGCGCGCCCGTCCACCGT
CTCCGTGCGCCACGTCTGCATGGCCGCCGACTCGCAGCCACCCAAACTCT
CCCGCCGCCAGCTCATCACACGCGCCCTTGCCGCCGCCGCTCTGGTCTCG
CTTCCATCCGCCTCGCGCGCCGAGCGCGAGTACCCCAACGTAGGTTTTCT
AGGCGGAAGTGATATTATCGACATCAACAACGCAAACGTACGCGCCTATC
AGAAGTTCCGCGGCTTTTACCCAACCCTCGCTGGCCTCATCGCGTCGAAC
GGGCCCTACTCCTCTGTCGACGATCTGTATGAACTGCCGGGTCTCACTGA
CGCTATGAAGGCTTCTTTGGATGAGTACAAGGAGAAGCTGGTTGCCTTGA
GGCCTACACCCGAGTACGTTATTGACAAGATCAACAATGGATTATACCGC
TAA
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Coding sequence (CDS) from alignment at tig00004416_pilon:693194..693646-

>Gchil6735.t1 ID=Gchil6735.t1|Name=Gchil6735.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=453bp|location=Sequence derived from alignment at tig00004416_pilon:693194..693646- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTTGTAACCGGACCAGCCCTCCCCGCCGCGCGCCCGTCCACCGT
CTCCGTGCGCCACGTCTGCATGGCCGCCGACTCGCAGCCACCCAAACTCT
CCCGCCGCCAGCTCATCACACGCGCCCTTGCCGCCGCCGCTCTGGTCTCG
CTTCCATCCGCCTCGCGCGCCGAGCGCGAGTACCCCAACGTAGGTTTTCT
AGGCGGAAGTGATATTATCGACATCAACAACGCAAACGTACGCGCCTATC
AGAAGTTCCGCGGCTTTTACCCAACCCTCGCTGGCCTCATCGCGTCGAAC
GGGCCCTACTCCTCTGTCGACGATCTGTATGAACTGCCGGGTCTCACTGA
CGCTATGAAGGCTTCTTTGGATGAGTACAAGGAGAAGCTGGTTGCCTTGA
GGCCTACACCCGAGTACGTTATTGACAAGATCAACAATGGATTATACCGC
TAA
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