Gchil6593.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6593.t1
Unique NameGchil6593.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:719525..720814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog68219.JNXI01000002_gene4259
PFAMsMOSC,MOSC_N
Max annot lvl201174|Actinobacteria
KEGG koko:K07140
Evalue8.51e-09
EggNOG OGsCOG3217@1|root,COG3217@2|Bacteria,2GPWY@201174|Actinobacteria
DescriptionMOSC domain protein beta barrel domain protein
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6593Gchil6593Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 719525..720814 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6593.t1.stop1Gchil6593.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 719525..719527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6593.t1.CDS1Gchil6593.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 719525..720814 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6593.t1.exon1Gchil6593.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 719525..720814 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6593.t1.start1Gchil6593.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 720812..720814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6593.t1Gchil6593.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 719525..720814 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6593.t1 ID=Gchil6593.t1|Name=Gchil6593.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=430bp
MTHQSGLLLLRAQDASVAIAFASRFALVCIANFAVGFGAGYLYAQYQNLC
VSEEKDSHAASEDDKASVTQQAPQSEQFSTVASDSAVEEQHDSLEKASRK
LMDSSLSDAEPKSPPATPLRTDDEALLTGRVLINPNAESSAFETASQEVH
GDLDKLNTASGIEEEQVASVAETAGPESTGGEEQKNTSIVGLQIQPIHGC
LPQSVTSLKLSQHGVENHLLYAVSEFTGRYISNEKVPLLSDVSPTILENG
HLSLSAPGQSTILHEPKLWGQMKKITIYGVQYEAVDQGDNVSKFFANYLE
IPGVRLLLVRPPPLSDGGHRLFKTWPTADRPLLITSEESLTPSKENGELL
VGTNLIISSSEPELSKAKIIKIDEYLFEIVNIPREGLDGGIPTQHLLGGG
NTLVPVNLGGNECSVQSGQRITIVEFRAD*
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spliced messenger RNA

>Gchil6593.t1 ID=Gchil6593.t1|Name=Gchil6593.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00004390_pilon:719525..720814- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACACCAATCCGGTTTACTACTCCTCCGTGCGCAAGACGCGTCTGT
TGCCATCGCGTTTGCCTCGCGTTTTGCACTTGTTTGCATCGCGAACTTTG
CCGTTGGTTTTGGCGCCGGTTATCTTTATGCGCAGTACCAAAACCTCTGC
GTATCGGAGGAGAAAGACAGTCATGCCGCTTCTGAAGACGACAAAGCTTC
CGTCACTCAACAGGCCCCGCAGAGTGAACAATTCTCGACAGTTGCTTCTG
ATTCAGCTGTCGAAGAGCAGCATGATTCTTTGGAAAAGGCCTCCAGGAAA
CTTATGGACTCGTCGCTATCTGACGCGGAGCCAAAGTCTCCACCAGCAAC
ACCACTGAGAACCGATGATGAAGCTCTACTAACAGGGCGAGTTTTGATAA
ATCCGAATGCGGAATCGAGCGCATTCGAGACTGCCAGCCAAGAGGTTCAT
GGCGACCTTGACAAGTTGAACACAGCCTCGGGAATTGAGGAAGAGCAGGT
TGCTTCTGTTGCTGAAACCGCCGGACCCGAGTCAACTGGCGGTGAAGAGC
AAAAAAACACAAGCATCGTCGGGCTTCAAATACAACCCATTCATGGCTGT
CTCCCACAGTCCGTGACATCGCTGAAACTTTCCCAGCATGGCGTTGAAAA
CCATCTTTTGTACGCAGTTTCCGAATTTACCGGTCGATACATTTCGAACG
AGAAGGTTCCTTTGCTTTCAGACGTTTCTCCCACTATTCTTGAGAACGGG
CACTTGAGTCTTTCGGCTCCAGGTCAATCGACAATTTTACACGAACCAAA
GTTGTGGGGTCAGATGAAGAAGATTACCATTTACGGCGTTCAGTACGAGG
CTGTCGATCAAGGTGATAACGTGTCAAAGTTCTTTGCCAACTATTTGGAG
ATTCCCGGAGTTCGACTCTTGCTGGTTCGACCACCACCTCTCTCGGATGG
AGGTCATCGTTTGTTTAAGACGTGGCCCACAGCTGATCGTCCTCTGCTTA
TAACAAGCGAGGAAAGTCTGACGCCTTCAAAGGAGAATGGTGAGCTTCTT
GTGGGAACAAACCTAATCATTTCAAGCTCAGAACCAGAACTTTCGAAAGC
TAAAATCATCAAGATTGATGAGTACTTATTTGAAATTGTAAACATTCCAA
GGGAAGGTTTGGATGGTGGGATTCCAACGCAGCATCTGCTTGGAGGTGGA
AATACATTGGTTCCGGTCAATTTAGGAGGAAACGAATGTTCGGTTCAAAG
TGGGCAGCGAATTACCATTGTTGAGTTCCGTGCAGACTAA
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protein sequence of Gchil6593.t1

>Gchil6593.t1 ID=Gchil6593.t1|Name=Gchil6593.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=430bp
MTHQSGLLLLRAQDASVAIAFASRFALVCIANFAVGFGAGYLYAQYQNLC
VSEEKDSHAASEDDKASVTQQAPQSEQFSTVASDSAVEEQHDSLEKASRK
LMDSSLSDAEPKSPPATPLRTDDEALLTGRVLINPNAESSAFETASQEVH
GDLDKLNTASGIEEEQVASVAETAGPESTGGEEQKNTSIVGLQIQPIHGC
LPQSVTSLKLSQHGVENHLLYAVSEFTGRYISNEKVPLLSDVSPTILENG
HLSLSAPGQSTILHEPKLWGQMKKITIYGVQYEAVDQGDNVSKFFANYLE
IPGVRLLLVRPPPLSDGGHRLFKTWPTADRPLLITSEESLTPSKENGELL
VGTNLIISSSEPELSKAKIIKIDEYLFEIVNIPREGLDGGIPTQHLLGGG
NTLVPVNLGGNECSVQSGQRITIVEFRAD*
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mRNA from alignment at tig00004390_pilon:719525..720814-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6593.t1 ID=Gchil6593.t1|Name=Gchil6593.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00004390_pilon:719525..720814- (Gracilaria chilensis NLEC103_M9 male)
ATGACACACCAATCCGGTTTACTACTCCTCCGTGCGCAAGACGCGTCTGT
TGCCATCGCGTTTGCCTCGCGTTTTGCACTTGTTTGCATCGCGAACTTTG
CCGTTGGTTTTGGCGCCGGTTATCTTTATGCGCAGTACCAAAACCTCTGC
GTATCGGAGGAGAAAGACAGTCATGCCGCTTCTGAAGACGACAAAGCTTC
CGTCACTCAACAGGCCCCGCAGAGTGAACAATTCTCGACAGTTGCTTCTG
ATTCAGCTGTCGAAGAGCAGCATGATTCTTTGGAAAAGGCCTCCAGGAAA
CTTATGGACTCGTCGCTATCTGACGCGGAGCCAAAGTCTCCACCAGCAAC
ACCACTGAGAACCGATGATGAAGCTCTACTAACAGGGCGAGTTTTGATAA
ATCCGAATGCGGAATCGAGCGCATTCGAGACTGCCAGCCAAGAGGTTCAT
GGCGACCTTGACAAGTTGAACACAGCCTCGGGAATTGAGGAAGAGCAGGT
TGCTTCTGTTGCTGAAACCGCCGGACCCGAGTCAACTGGCGGTGAAGAGC
AAAAAAACACAAGCATCGTCGGGCTTCAAATACAACCCATTCATGGCTGT
CTCCCACAGTCCGTGACATCGCTGAAACTTTCCCAGCATGGCGTTGAAAA
CCATCTTTTGTACGCAGTTTCCGAATTTACCGGTCGATACATTTCGAACG
AGAAGGTTCCTTTGCTTTCAGACGTTTCTCCCACTATTCTTGAGAACGGG
CACTTGAGTCTTTCGGCTCCAGGTCAATCGACAATTTTACACGAACCAAA
GTTGTGGGGTCAGATGAAGAAGATTACCATTTACGGCGTTCAGTACGAGG
CTGTCGATCAAGGTGATAACGTGTCAAAGTTCTTTGCCAACTATTTGGAG
ATTCCCGGAGTTCGACTCTTGCTGGTTCGACCACCACCTCTCTCGGATGG
AGGTCATCGTTTGTTTAAGACGTGGCCCACAGCTGATCGTCCTCTGCTTA
TAACAAGCGAGGAAAGTCTGACGCCTTCAAAGGAGAATGGTGAGCTTCTT
GTGGGAACAAACCTAATCATTTCAAGCTCAGAACCAGAACTTTCGAAAGC
TAAAATCATCAAGATTGATGAGTACTTATTTGAAATTGTAAACATTCCAA
GGGAAGGTTTGGATGGTGGGATTCCAACGCAGCATCTGCTTGGAGGTGGA
AATACATTGGTTCCGGTCAATTTAGGAGGAAACGAATGTTCGGTTCAAAG
TGGGCAGCGAATTACCATTGTTGAGTTCCGTGCAGACTAA
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Coding sequence (CDS) from alignment at tig00004390_pilon:719525..720814-

>Gchil6593.t1 ID=Gchil6593.t1|Name=Gchil6593.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00004390_pilon:719525..720814- (Gracilaria chilensis NLEC103_M9 male)
ATGACACACCAATCCGGTTTACTACTCCTCCGTGCGCAAGACGCGTCTGT
TGCCATCGCGTTTGCCTCGCGTTTTGCACTTGTTTGCATCGCGAACTTTG
CCGTTGGTTTTGGCGCCGGTTATCTTTATGCGCAGTACCAAAACCTCTGC
GTATCGGAGGAGAAAGACAGTCATGCCGCTTCTGAAGACGACAAAGCTTC
CGTCACTCAACAGGCCCCGCAGAGTGAACAATTCTCGACAGTTGCTTCTG
ATTCAGCTGTCGAAGAGCAGCATGATTCTTTGGAAAAGGCCTCCAGGAAA
CTTATGGACTCGTCGCTATCTGACGCGGAGCCAAAGTCTCCACCAGCAAC
ACCACTGAGAACCGATGATGAAGCTCTACTAACAGGGCGAGTTTTGATAA
ATCCGAATGCGGAATCGAGCGCATTCGAGACTGCCAGCCAAGAGGTTCAT
GGCGACCTTGACAAGTTGAACACAGCCTCGGGAATTGAGGAAGAGCAGGT
TGCTTCTGTTGCTGAAACCGCCGGACCCGAGTCAACTGGCGGTGAAGAGC
AAAAAAACACAAGCATCGTCGGGCTTCAAATACAACCCATTCATGGCTGT
CTCCCACAGTCCGTGACATCGCTGAAACTTTCCCAGCATGGCGTTGAAAA
CCATCTTTTGTACGCAGTTTCCGAATTTACCGGTCGATACATTTCGAACG
AGAAGGTTCCTTTGCTTTCAGACGTTTCTCCCACTATTCTTGAGAACGGG
CACTTGAGTCTTTCGGCTCCAGGTCAATCGACAATTTTACACGAACCAAA
GTTGTGGGGTCAGATGAAGAAGATTACCATTTACGGCGTTCAGTACGAGG
CTGTCGATCAAGGTGATAACGTGTCAAAGTTCTTTGCCAACTATTTGGAG
ATTCCCGGAGTTCGACTCTTGCTGGTTCGACCACCACCTCTCTCGGATGG
AGGTCATCGTTTGTTTAAGACGTGGCCCACAGCTGATCGTCCTCTGCTTA
TAACAAGCGAGGAAAGTCTGACGCCTTCAAAGGAGAATGGTGAGCTTCTT
GTGGGAACAAACCTAATCATTTCAAGCTCAGAACCAGAACTTTCGAAAGC
TAAAATCATCAAGATTGATGAGTACTTATTTGAAATTGTAAACATTCCAA
GGGAAGGTTTGGATGGTGGGATTCCAACGCAGCATCTGCTTGGAGGTGGA
AATACATTGGTTCCGGTCAATTTAGGAGGAAACGAATGTTCGGTTCAAAG
TGGGCAGCGAATTACCATTGTTGAGTTCCGTGCAGACTAA
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