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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005706752.1 |
| PFAMs | ARID,RBB1NT,Tudor-knot |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K07874,ko:K11763 |
| KEGG Pathway | ko05134,map05134 |
| Evalue | 2.87e-16 |
| EggNOG OGs | KOG2744@1|root,KOG2744@2759|Eukaryota |
| Description | DNA binding |
| COG category | K |
| BRITE | ko00000,ko00001,ko03021,ko03036,ko04031,ko04131,ko04147 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil6575.t1 ID=Gchil6575.t1|Name=Gchil6575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=880bp MLEKSDIRRMPAASHALVHEAAFDSGYTVHSQEVEHFDSTGHSLKDLSTG AESKLIPHPTTISSVAECQGVIPLHLLEPMQYSETSQTQSHPHLLQSNHP VHGITQGNHFAVSLPGDPNNILGRYSHSHSQKENNVSLRHPECPTVGEVR DYNQELTQYSHQEGFRINILSLDVVDCPLQKDGRHTIICGRLPDNHPYAT AARRLGRYLISNRYRGVQECTSAIERKNNFFKDWKAFHEELLGITPKLPV IGGGELDIYSLMHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVL KNAYEKLLFYYEEKLVHDKMPEDVNRKLDMKRMAMEEKLKERKAAERLAR MTASKRRSSGALDLLLDVGDCIDLVDENGYLDRDDPRLKRILLAVSDRPR ITLNYLDLIVSNDIDDLLVPELEDTSTDDESFHIVFHDVIQMDEHEQVET GADVVLLALAECLPSCTLRLDANFERPKDLGLGKAICILPFCSPNMKRAL GLLISAVIKASKLPSFLLLADKNSSHGFIDGLFYLLHRYLRHESSEDEEY EACETDVLSAAYCALSVIQMLVDEEQNRPKIISNVGFRYAIGRFLGYEDS SRSFLLVMLDIITKCCTMMVDLLSERDMDLFVSSLVQRLEMATGLDPEAP LEHEVKKGLDVPPDYEISSKVLPILVTLARKMGIKCRNSGRLIELCVRML HCQERIADNTNLALIVHTIAERFPNMIASNRDLVRGVLKLVRDATCVDIA AETLIIINRTLPVRELVLESGLFSGWKQCAADRDAPLTHLVESLSDETEQ AHRNHFVADIRISASGGDERETSFDENIVNQSGTYYADEGATEAKFSSED DEDETDEEGESDDDSSFGSSMHDGPTDVA* back to topspliced messenger RNA >Gchil6575.t1 ID=Gchil6575.t1|Name=Gchil6575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2640bp|location=Sequence derived from alignment at tig00004390_pilon:670998..673714- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTTAGAGAAGTCAGATATCAGAAGAATGCCTGCTGCTTCCCACGCGCT AGTCCACGAAGCTGCGTTTGATAGTGGGTATACCGTCCACTCTCAAGAAG TTGAGCATTTTGATTCAACCGGGCATTCTCTCAAAGATCTTTCAACTGGA GCTGAATCCAAATTAATTCCACATCCAACTACAATATCGAGTGTGGCCGA GTGCCAGGGGGTGATCCCACTGCATTTATTAGAGCCGATGCAATACTCTG AAACATCTCAAACACAAAGTCACCCGCATCTTTTACAGTCAAACCACCCA GTGCATGGCATCACTCAGGGGAACCATTTCGCGGTCTCTCTTCCCGGAGA CCCCAATAACATCCTTGGGAGATATTCTCATTCTCATTCTCAAAAAGAGA ATAATGTTTCTCTCAGACATCCAGAATGCCCTACTGTTGGAGAGGTTCGA GATTATAATCAAGAACTCACACAATACTCTCATCAAGAAGGTTTCCGCAT CAATATACTATCTCTTGATGTAGTGGATTGTCCACTGCAAAAGGATGGGC GTCATACGATCATCTGTGGAAGACTCCCTGACAATCATCCCTATGCAACT GCAGCACGGCGCTTGGGGAGATATTTGATCTCAAACCGGTACAGAGGTGT TCAGGAGTGTACCTCCGCGATTGAGCGCAAAAACAACTTTTTCAAAGATT GGAAGGCCTTTCATGAAGAACTTCTTGGAATCACTCCAAAGCTGCCAGTT ATTGGTGGAGGAGAACTGGATATTTATTCGTTGATGCACGAAGTTTTACT TCTTGGGGGAGTGCTCAACGTCGTTAAAAAAAGGGCTTTTCGTGTGGTTG CACAGCAACTGGAATTGCCAAAGAGTTGCACCAGCGCAGCCTCCGTACTG AAGAACGCCTACGAAAAGCTTCTGTTCTACTATGAAGAAAAACTAGTTCA TGATAAAATGCCAGAAGATGTTAACCGAAAGCTGGATATGAAGCGCATGG CCATGGAGGAAAAGCTCAAAGAACGCAAAGCAGCTGAAAGATTGGCAAGA ATGACGGCATCTAAGAGAAGAAGCTCGGGAGCTTTGGATTTGCTACTGGA TGTTGGTGACTGTATAGACCTGGTAGATGAAAATGGATATTTGGATAGAG ATGACCCGCGTTTGAAACGAATTTTGTTGGCAGTCTCTGATAGACCGAGG ATAACTTTAAACTATCTCGATCTCATCGTAAGTAATGATATTGATGATCT TCTGGTACCGGAATTAGAAGACACCTCAACTGATGATGAGTCATTTCACA TAGTATTCCATGACGTCATTCAAATGGACGAGCATGAGCAAGTGGAGACC GGAGCCGATGTTGTCTTGTTAGCATTGGCGGAATGTTTGCCGTCGTGTAC GCTAAGACTGGATGCCAACTTCGAAAGACCGAAGGACTTGGGGTTAGGAA AAGCAATATGCATCTTGCCCTTCTGCTCTCCAAACATGAAGAGAGCCCTG GGGTTGCTGATTAGTGCAGTAATCAAAGCTTCCAAGCTTCCATCATTTCT CCTTCTGGCAGACAAGAATTCATCCCATGGCTTTATCGACGGCTTGTTCT ATTTGCTTCATCGCTATTTACGACATGAAAGCAGCGAAGATGAGGAATAC GAGGCTTGTGAGACTGACGTTCTAAGTGCTGCGTATTGTGCCTTGAGCGT GATTCAAATGCTAGTAGACGAAGAGCAGAATCGTCCAAAAATAATAAGCA ATGTCGGATTCCGCTATGCTATTGGACGGTTTCTGGGATATGAGGATTCT AGTCGATCATTCTTGCTGGTTATGCTGGACATAATTACAAAATGCTGCAC GATGATGGTGGACTTACTTAGCGAGAGAGATATGGATCTCTTTGTAAGTT CATTGGTACAACGTTTGGAAATGGCCACAGGACTGGATCCCGAAGCGCCT TTGGAACACGAAGTGAAAAAAGGGCTGGATGTTCCGCCTGATTACGAAAT TTCGTCAAAGGTTCTCCCAATTTTGGTCACCTTGGCGAGAAAGATGGGCA TAAAATGCAGAAACAGTGGGCGCTTAATCGAGCTTTGCGTGCGCATGTTG CATTGTCAAGAAAGAATAGCAGATAACACGAATCTTGCTCTGATTGTGCA CACGATTGCTGAACGGTTTCCAAATATGATTGCAAGCAACAGGGATTTGG TGCGAGGTGTGCTAAAATTGGTTCGCGACGCTACATGCGTGGATATCGCG GCAGAGACTTTGATTATTATCAATCGCACTCTGCCTGTCAGAGAGCTCGT TCTAGAAAGCGGATTGTTCAGTGGTTGGAAACAGTGCGCAGCAGATCGAG ACGCGCCCTTGACGCATCTAGTCGAAAGTCTAAGTGATGAAACTGAGCAA GCTCACAGGAACCACTTTGTTGCTGACATCAGAATATCGGCATCAGGTGG CGATGAGCGGGAAACAAGCTTCGATGAAAACATAGTAAACCAGAGTGGAA CGTACTATGCTGATGAGGGTGCGACAGAGGCCAAGTTCTCCAGCGAAGAC GATGAAGATGAGACTGATGAAGAAGGAGAAAGCGACGATGATAGCTCTTT TGGTAGCTCGATGCATGACGGTCCAACAGATGTGGCATAG back to topprotein sequence of Gchil6575.t1 >Gchil6575.t1 ID=Gchil6575.t1|Name=Gchil6575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=880bp
MLEKSDIRRMPAASHALVHEAAFDSGYTVHSQEVEHFDSTGHSLKDLSTG AESKLIPHPTTISSVAECQGVIPLHLLEPMQYSETSQTQSHPHLLQSNHP VHGITQGNHFAVSLPGDPNNILGRYSHSHSQKENNVSLRHPECPTVGEVR DYNQELTQYSHQEGFRINILSLDVVDCPLQKDGRHTIICGRLPDNHPYAT AARRLGRYLISNRYRGVQECTSAIERKNNFFKDWKAFHEELLGITPKLPV IGGGELDIYSLMHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVL KNAYEKLLFYYEEKLVHDKMPEDVNRKLDMKRMAMEEKLKERKAAERLAR MTASKRRSSGALDLLLDVGDCIDLVDENGYLDRDDPRLKRILLAVSDRPR ITLNYLDLIVSNDIDDLLVPELEDTSTDDESFHIVFHDVIQMDEHEQVET GADVVLLALAECLPSCTLRLDANFERPKDLGLGKAICILPFCSPNMKRAL GLLISAVIKASKLPSFLLLADKNSSHGFIDGLFYLLHRYLRHESSEDEEY EACETDVLSAAYCALSVIQMLVDEEQNRPKIISNVGFRYAIGRFLGYEDS SRSFLLVMLDIITKCCTMMVDLLSERDMDLFVSSLVQRLEMATGLDPEAP LEHEVKKGLDVPPDYEISSKVLPILVTLARKMGIKCRNSGRLIELCVRML HCQERIADNTNLALIVHTIAERFPNMIASNRDLVRGVLKLVRDATCVDIA AETLIIINRTLPVRELVLESGLFSGWKQCAADRDAPLTHLVESLSDETEQ AHRNHFVADIRISASGGDERETSFDENIVNQSGTYYADEGATEAKFSSED DEDETDEEGESDDDSSFGSSMHDGPTDVA* back to topmRNA from alignment at tig00004390_pilon:670998..673714- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil6575.t1 ID=Gchil6575.t1|Name=Gchil6575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2717bp|location=Sequence derived from alignment at tig00004390_pilon:670998..673714- (Gracilaria chilensis NLEC103_M9 male) ATGTTAGAGAAGTCAGATATCAGAAGAATGCCTGCTGCTTCCCACGCGCT
AGTCCACGAAGCTGCGTTTGATAGTGGGTATACCGTCCACTCTCAAGAAG
TTGAGCATTTTGATTCAACCGGGCATTCTCTCAAAGATCTTTCAACTGGA
GCTGAATCCAAATTAATTCCACATCCAACTACAATATCGAGTGTGGCCGA
GTGCCAGGGGGTGATCCCACTGCATTTATTAGAGCCGATGCAATACTCTG
AAACATCTCAAACACAAAGTCACCCGCATCTTTTACAGTCAAACCACCCA
GTGCATGGCATCACTCAGGGGAACCATTTCGCGGTCTCTCTTCCCGGAGA
CCCCAATAACATCCTTGGGAGATATTCTCATTCTCATTCTCAAAAAGAGA
ATAATGTTTCTCTCAGACATCCAGAATGCCCTACTGTTGGAGAGGTTCGA
GATTATAATCAAGAACTCACACAATACTCTCATCAAGAAGGTTTCCGCAT
CAATATACTATCTCTTGATGTAGTGGATTGTCCACTGCAAAAGGATGGGC
GTCATACGATCATCTGTGGAAGACTCCCTGACAATCATCCCTATGCAACT
GCAGCACGGCGCTTGGGGAGATATTTGATCTCAAACCGGTACAGAGGTGT
TCAGGAGTGTACCTCCGCGATTGAGCGCAAAAACAACTTTTTCAAAGATT
GGAAGGCCTTTCATGAAGAACTTCTTGGAATCACTCCAAAGCTGCCAGTT
ATTGGTGGAGGAGAACTGGATATTTATTCGTTGATGCACGAAGTTTTACT
TCTTGGGGGAGTGCTCAACGTCGTTAAAAAAAGGGCTTTTCGTGTGGTTG
CACAGCAACTGGAATTGCCAAAGAGTTGCACCAGCGCAGCCTCCGTACTG
AAGAACGCCTACGAAAAGCTTCTGTTCTACTATGAAGAAAAACTAGTTCA
TGATAAAATGCCAGAAGATGTTAACCGAAAGCTGGATATGAAGCGCATGG
CCATGGAGGAAAAGCTCAAAGAACGCAAAGCAGCTGAAAGATTGGCAAGA
ATGACGGCATCTAAGAGAAGAAGCTCGGGAGCTTTGGATTTGCTACTGGA
TGTTGGTGACTGTATAGACCTGGTAGATGAAAATGGATATTTGGATAGAG
ATGACCCGCGTTTGAAACGAATTTTGTTGGCAGTCTCTGATAGACCGAGG
ATAACTTTAAACTATCTCGATCTCATCGTAAGTAATGATATTGATGATCT
TCTGGTACCGGAATTAGAAGACACCTCAACTGATGATGAGTCATTTCACA
TAGTATTCCATGACGTCATTCAAATGGACGAGCATGAGCAAGGTACGTAA
ATGCACACTCTGCTCCTGCGGTGTATGAGAGCTCTGACGTTTTTATTGAA
TGAGATGAGAAATTCGTAGTGGAGACCGGAGCCGATGTTGTCTTGTTAGC
ATTGGCGGAATGTTTGCCGTCGTGTACGCTAAGACTGGATGCCAACTTCG
AAAGACCGAAGGACTTGGGGTTAGGAAAAGCAATATGCATCTTGCCCTTC
TGCTCTCCAAACATGAAGAGAGCCCTGGGGTTGCTGATTAGTGCAGTAAT
CAAAGCTTCCAAGCTTCCATCATTTCTCCTTCTGGCAGACAAGAATTCAT
CCCATGGCTTTATCGACGGCTTGTTCTATTTGCTTCATCGCTATTTACGA
CATGAAAGCAGCGAAGATGAGGAATACGAGGCTTGTGAGACTGACGTTCT
AAGTGCTGCGTATTGTGCCTTGAGCGTGATTCAAATGCTAGTAGACGAAG
AGCAGAATCGTCCAAAAATAATAAGCAATGTCGGATTCCGCTATGCTATT
GGACGGTTTCTGGGATATGAGGATTCTAGTCGATCATTCTTGCTGGTTAT
GCTGGACATAATTACAAAATGCTGCACGATGATGGTGGACTTACTTAGCG
AGAGAGATATGGATCTCTTTGTAAGTTCATTGGTACAACGTTTGGAAATG
GCCACAGGACTGGATCCCGAAGCGCCTTTGGAACACGAAGTGAAAAAAGG
GCTGGATGTTCCGCCTGATTACGAAATTTCGTCAAAGGTTCTCCCAATTT
TGGTCACCTTGGCGAGAAAGATGGGCATAAAATGCAGAAACAGTGGGCGC
TTAATCGAGCTTTGCGTGCGCATGTTGCATTGTCAAGAAAGAATAGCAGA
TAACACGAATCTTGCTCTGATTGTGCACACGATTGCTGAACGGTTTCCAA
ATATGATTGCAAGCAACAGGGATTTGGTGCGAGGTGTGCTAAAATTGGTT
CGCGACGCTACATGCGTGGATATCGCGGCAGAGACTTTGATTATTATCAA
TCGCACTCTGCCTGTCAGAGAGCTCGTTCTAGAAAGCGGATTGTTCAGTG
GTTGGAAACAGTGCGCAGCAGATCGAGACGCGCCCTTGACGCATCTAGTC
GAAAGTCTAAGTGATGAAACTGAGCAAGCTCACAGGAACCACTTTGTTGC
TGACATCAGAATATCGGCATCAGGTGGCGATGAGCGGGAAACAAGCTTCG
ATGAAAACATAGTAAACCAGAGTGGAACGTACTATGCTGATGAGGGTGCG
ACAGAGGCCAAGTTCTCCAGCGAAGACGATGAAGATGAGACTGATGAAGA
AGGAGAAAGCGACGATGATAGCTCTTTTGGTAGCTCGATGCATGACGGTC
CAACAGATGTGGCATAG back to topCoding sequence (CDS) from alignment at tig00004390_pilon:670998..673714- >Gchil6575.t1 ID=Gchil6575.t1|Name=Gchil6575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2640bp|location=Sequence derived from alignment at tig00004390_pilon:670998..673714- (Gracilaria chilensis NLEC103_M9 male) ATGTTAGAGAAGTCAGATATCAGAAGAATGCCTGCTGCTTCCCACGCGCT AGTCCACGAAGCTGCGTTTGATAGTGGGTATACCGTCCACTCTCAAGAAG TTGAGCATTTTGATTCAACCGGGCATTCTCTCAAAGATCTTTCAACTGGA GCTGAATCCAAATTAATTCCACATCCAACTACAATATCGAGTGTGGCCGA GTGCCAGGGGGTGATCCCACTGCATTTATTAGAGCCGATGCAATACTCTG AAACATCTCAAACACAAAGTCACCCGCATCTTTTACAGTCAAACCACCCA GTGCATGGCATCACTCAGGGGAACCATTTCGCGGTCTCTCTTCCCGGAGA CCCCAATAACATCCTTGGGAGATATTCTCATTCTCATTCTCAAAAAGAGA ATAATGTTTCTCTCAGACATCCAGAATGCCCTACTGTTGGAGAGGTTCGA GATTATAATCAAGAACTCACACAATACTCTCATCAAGAAGGTTTCCGCAT CAATATACTATCTCTTGATGTAGTGGATTGTCCACTGCAAAAGGATGGGC GTCATACGATCATCTGTGGAAGACTCCCTGACAATCATCCCTATGCAACT GCAGCACGGCGCTTGGGGAGATATTTGATCTCAAACCGGTACAGAGGTGT TCAGGAGTGTACCTCCGCGATTGAGCGCAAAAACAACTTTTTCAAAGATT GGAAGGCCTTTCATGAAGAACTTCTTGGAATCACTCCAAAGCTGCCAGTT ATTGGTGGAGGAGAACTGGATATTTATTCGTTGATGCACGAAGTTTTACT TCTTGGGGGAGTGCTCAACGTCGTTAAAAAAAGGGCTTTTCGTGTGGTTG CACAGCAACTGGAATTGCCAAAGAGTTGCACCAGCGCAGCCTCCGTACTG AAGAACGCCTACGAAAAGCTTCTGTTCTACTATGAAGAAAAACTAGTTCA TGATAAAATGCCAGAAGATGTTAACCGAAAGCTGGATATGAAGCGCATGG CCATGGAGGAAAAGCTCAAAGAACGCAAAGCAGCTGAAAGATTGGCAAGA ATGACGGCATCTAAGAGAAGAAGCTCGGGAGCTTTGGATTTGCTACTGGA TGTTGGTGACTGTATAGACCTGGTAGATGAAAATGGATATTTGGATAGAG ATGACCCGCGTTTGAAACGAATTTTGTTGGCAGTCTCTGATAGACCGAGG ATAACTTTAAACTATCTCGATCTCATCGTAAGTAATGATATTGATGATCT TCTGGTACCGGAATTAGAAGACACCTCAACTGATGATGAGTCATTTCACA TAGTATTCCATGACGTCATTCAAATGGACGAGCATGAGCAAGTGGAGACC GGAGCCGATGTTGTCTTGTTAGCATTGGCGGAATGTTTGCCGTCGTGTAC GCTAAGACTGGATGCCAACTTCGAAAGACCGAAGGACTTGGGGTTAGGAA AAGCAATATGCATCTTGCCCTTCTGCTCTCCAAACATGAAGAGAGCCCTG GGGTTGCTGATTAGTGCAGTAATCAAAGCTTCCAAGCTTCCATCATTTCT CCTTCTGGCAGACAAGAATTCATCCCATGGCTTTATCGACGGCTTGTTCT ATTTGCTTCATCGCTATTTACGACATGAAAGCAGCGAAGATGAGGAATAC GAGGCTTGTGAGACTGACGTTCTAAGTGCTGCGTATTGTGCCTTGAGCGT GATTCAAATGCTAGTAGACGAAGAGCAGAATCGTCCAAAAATAATAAGCA ATGTCGGATTCCGCTATGCTATTGGACGGTTTCTGGGATATGAGGATTCT AGTCGATCATTCTTGCTGGTTATGCTGGACATAATTACAAAATGCTGCAC GATGATGGTGGACTTACTTAGCGAGAGAGATATGGATCTCTTTGTAAGTT CATTGGTACAACGTTTGGAAATGGCCACAGGACTGGATCCCGAAGCGCCT TTGGAACACGAAGTGAAAAAAGGGCTGGATGTTCCGCCTGATTACGAAAT TTCGTCAAAGGTTCTCCCAATTTTGGTCACCTTGGCGAGAAAGATGGGCA TAAAATGCAGAAACAGTGGGCGCTTAATCGAGCTTTGCGTGCGCATGTTG CATTGTCAAGAAAGAATAGCAGATAACACGAATCTTGCTCTGATTGTGCA CACGATTGCTGAACGGTTTCCAAATATGATTGCAAGCAACAGGGATTTGG TGCGAGGTGTGCTAAAATTGGTTCGCGACGCTACATGCGTGGATATCGCG GCAGAGACTTTGATTATTATCAATCGCACTCTGCCTGTCAGAGAGCTCGT TCTAGAAAGCGGATTGTTCAGTGGTTGGAAACAGTGCGCAGCAGATCGAG ACGCGCCCTTGACGCATCTAGTCGAAAGTCTAAGTGATGAAACTGAGCAA GCTCACAGGAACCACTTTGTTGCTGACATCAGAATATCGGCATCAGGTGG CGATGAGCGGGAAACAAGCTTCGATGAAAACATAGTAAACCAGAGTGGAA CGTACTATGCTGATGAGGGTGCGACAGAGGCCAAGTTCTCCAGCGAAGAC GATGAAGATGAGACTGATGAAGAAGGAGAAAGCGACGATGATAGCTCTTT TGGTAGCTCGATGCATGACGGTCCAACAGATGTGGCATAG back to top
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