Gchil6565.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6565.t1
Unique Name	Gchil6565.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	354

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:641986..643047 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6183.Smp_018170.1
Preferred name	klf17
PFAMs	zf-C2H2
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K09204,ko:K09207,ko:K17845,ko:K17846
KEGG Pathway	ko04068,ko04371,ko04550,ko05418,map04068,map04371,map04550,map05418
Evalue	4.59e-07
EggNOG OGs	KOG1721@1\|root,KOG1721@2759\|Eukaryota,38Y9U@33154\|Opisthokonta,3BMQW@33208\|Metazoa,3D4BT@33213\|Bilateria
Description	Zinc finger, C2H2 type
COG category	S
BRITE	ko00000,ko00001,ko03000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6565	Gchil6565	Gracilaria chilensis NLEC103_M9 male	gene	tig00004390_pilon 641986..643047 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6565.t1.start1	Gchil6565.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004390_pilon 641986..641988 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6565.t1.CDS1	Gchil6565.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004390_pilon 641986..643047 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6565.t1.exon1	Gchil6565.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004390_pilon 641986..643047 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6565.t1.stop1	Gchil6565.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004390_pilon 643045..643047 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6565.t1	Gchil6565.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004390_pilon 641986..643047 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004390_pilon:641986..643047+
coding sequence from alignment at tig00004390_pilon:641986..643047+

mRNA sequence

>Gchil6565.t1 ID=Gchil6565.t1|Name=Gchil6565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=354bp
MVARSSSSSLSPSTSSSSTTTTCLTNSSNKSSASSSSKSPETHVCPYPTC
AKSFSKKYNLKAHLRLHTGEQPFECDRPNCNKKFKWRSSLSSHTVWHSRK
DKSAASSSQPQPPQPPQPPQPPPPPHTTVTAATSAGARACSVVPTGDAPA
CTVACSGSRAANRKRPRAASARRAVSALRTASSSVDLSKLPNSTKRSKPP
AKKKKLANGEGRIQRVQHGMPHVVLEEQTVLAVREHEQCYLPPPCSPLTD
AASFFDCSSPTESAVESQPLLQLDDLSEHVFSLDVRHSDAAPLQMNIGLE
DVVSIMDDTDHTGLFSACGGGSCGAFAGLETRFGPLDLDNLPGFGMNTKG
EGF*

spliced messenger RNA

>Gchil6565.t1 ID=Gchil6565.t1|Name=Gchil6565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00004390_pilon:641986..643047+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atggttgcgcgctcctcctcctcctcgctgtcgccctccacatcgtcgtc
gtccaccaccaccacctgcctcacaaactcctccaataagtcctccgcct
cctcttcctccAAATCACCCGAAACGCACGTATGCCCCTACCCCACCTGC
GCCAAATCCTTCTCCAAAAAGTATAACCTCAAGGCCCACCTCCGACTGCA
CACCGGCGAGCAGCCGTTCGAGTGCGATCGTCCTAACTGCAACAAAAAGT
TCAAGTGGCGTTCCTCCCTTTCCTCCCACACCGTGTGGCACTCCCGCAAG
GACAAGAGCGCCGCCTCATCCTCCCAgccgcagccgccgcagccgccgca
gccgccgcagccgccACCACCGCCGCACACCACGGTAACAGCCGCCACCT
CAGCTGGCGCGCGCGCCTGCTCCGTCGTGCCCACCGGCGACGCGCCAGCG
TGCACGGTGGCGTGCTCCGGCTCAAGAGCTGCAAACCGCAAGCGCCCGCG
CGCAGCGTCTGCACGGCGCGCCGTGTCGGCACTGCGCACCGCGTCGTCCA
GCGTGGATCTCAGCAAGCTGCCCAACAGCACCAAACGCTCCAAACCACCC
GCAAAGAAGAAGAAGCTTGCAAACGGCGAGGGGCGCATACAGCGCGTGCA
GCATGGTATGCCTCATGTGGTGCTGGAGGAACAGACAGTGCTTGCGGTGC
GCGAGCACGAACAGTGTTATTTGCCGCCGCCGTGCTCGCCGTTGACGGAT
GCTGCTTCCTTCTTTGACTGCTCGTCGCCTACGGAGTCGGCTGTGGAGTC
GCAGCCGCTGCTGCAGCTGGATGACTTGTCGGAGCATGTTTTCTCGTTGG
ACGTGAGGCATTCGGACGCGGCGCCGTTGCAGATGAACATTGGTCTTGAG
GATGTAGTCAGCATCATGGACGACACAGATCATACTGGGTTGTTTTCGGC
GTGCGGCGGCGGTAGCTGCGGTGCGTTTGCTGGCCTCGAGACTCGTTTCG
GGCCGTTGGACCTGGACAACTTGCCGGGCTTTGGCATGAATACAAAGGGT
GAGGGATTCTAA

protein sequence of Gchil6565.t1

>Gchil6565.t1 ID=Gchil6565.t1|Name=Gchil6565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=354bp
MVARSSSSSLSPSTSSSSTTTTCLTNSSNKSSASSSSKSPETHVCPYPTC
AKSFSKKYNLKAHLRLHTGEQPFECDRPNCNKKFKWRSSLSSHTVWHSRK
DKSAASSSQPQPPQPPQPPQPPPPPHTTVTAATSAGARACSVVPTGDAPA
CTVACSGSRAANRKRPRAASARRAVSALRTASSSVDLSKLPNSTKRSKPP
AKKKKLANGEGRIQRVQHGMPHVVLEEQTVLAVREHEQCYLPPPCSPLTD
AASFFDCSSPTESAVESQPLLQLDDLSEHVFSLDVRHSDAAPLQMNIGLE
DVVSIMDDTDHTGLFSACGGGSCGAFAGLETRFGPLDLDNLPGFGMNTKG
EGF*

mRNA from alignment at tig00004390_pilon:641986..643047+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6565.t1 ID=Gchil6565.t1|Name=Gchil6565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00004390_pilon:641986..643047+ (Gracilaria chilensis NLEC103_M9 male)
atggttgcgcgctcctcctcctcctcgctgtcgccctccacatcgtcgtc
gtccaccaccaccacctgcctcacaaactcctccaataagtcctccgcct
cctcttcctccAAATCACCCGAAACGCACGTATGCCCCTACCCCACCTGC
GCCAAATCCTTCTCCAAAAAGTATAACCTCAAGGCCCACCTCCGACTGCA
CACCGGCGAGCAGCCGTTCGAGTGCGATCGTCCTAACTGCAACAAAAAGT
TCAAGTGGCGTTCCTCCCTTTCCTCCCACACCGTGTGGCACTCCCGCAAG
GACAAGAGCGCCGCCTCATCCTCCCAgccgcagccgccgcagccgccgca
gccgccgcagccgccACCACCGCCGCACACCACGGTAACAGCCGCCACCT
CAGCTGGCGCGCGCGCCTGCTCCGTCGTGCCCACCGGCGACGCGCCAGCG
TGCACGGTGGCGTGCTCCGGCTCAAGAGCTGCAAACCGCAAGCGCCCGCG
CGCAGCGTCTGCACGGCGCGCCGTGTCGGCACTGCGCACCGCGTCGTCCA
GCGTGGATCTCAGCAAGCTGCCCAACAGCACCAAACGCTCCAAACCACCC
GCAAAGAAGAAGAAGCTTGCAAACGGCGAGGGGCGCATACAGCGCGTGCA
GCATGGTATGCCTCATGTGGTGCTGGAGGAACAGACAGTGCTTGCGGTGC
GCGAGCACGAACAGTGTTATTTGCCGCCGCCGTGCTCGCCGTTGACGGAT
GCTGCTTCCTTCTTTGACTGCTCGTCGCCTACGGAGTCGGCTGTGGAGTC
GCAGCCGCTGCTGCAGCTGGATGACTTGTCGGAGCATGTTTTCTCGTTGG
ACGTGAGGCATTCGGACGCGGCGCCGTTGCAGATGAACATTGGTCTTGAG
GATGTAGTCAGCATCATGGACGACACAGATCATACTGGGTTGTTTTCGGC
GTGCGGCGGCGGTAGCTGCGGTGCGTTTGCTGGCCTCGAGACTCGTTTCG
GGCCGTTGGACCTGGACAACTTGCCGGGCTTTGGCATGAATACAAAGGGT
GAGGGATTCTAA

Coding sequence (CDS) from alignment at tig00004390_pilon:641986..643047+

>Gchil6565.t1 ID=Gchil6565.t1|Name=Gchil6565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1062bp|location=Sequence derived from alignment at tig00004390_pilon:641986..643047+ (Gracilaria chilensis NLEC103_M9 male)
atggttgcgcgctcctcctcctcctcgctgtcgccctccacatcgtcgtc
gtccaccaccaccacctgcctcacaaactcctccaataagtcctccgcct
cctcttcctccAAATCACCCGAAACGCACGTATGCCCCTACCCCACCTGC
GCCAAATCCTTCTCCAAAAAGTATAACCTCAAGGCCCACCTCCGACTGCA
CACCGGCGAGCAGCCGTTCGAGTGCGATCGTCCTAACTGCAACAAAAAGT
TCAAGTGGCGTTCCTCCCTTTCCTCCCACACCGTGTGGCACTCCCGCAAG
GACAAGAGCGCCGCCTCATCCTCCCAgccgcagccgccgcagccgccgca
gccgccgcagccgccACCACCGCCGCACACCACGGTAACAGCCGCCACCT
CAGCTGGCGCGCGCGCCTGCTCCGTCGTGCCCACCGGCGACGCGCCAGCG
TGCACGGTGGCGTGCTCCGGCTCAAGAGCTGCAAACCGCAAGCGCCCGCG
CGCAGCGTCTGCACGGCGCGCCGTGTCGGCACTGCGCACCGCGTCGTCCA
GCGTGGATCTCAGCAAGCTGCCCAACAGCACCAAACGCTCCAAACCACCC
GCAAAGAAGAAGAAGCTTGCAAACGGCGAGGGGCGCATACAGCGCGTGCA
GCATGGTATGCCTCATGTGGTGCTGGAGGAACAGACAGTGCTTGCGGTGC
GCGAGCACGAACAGTGTTATTTGCCGCCGCCGTGCTCGCCGTTGACGGAT
GCTGCTTCCTTCTTTGACTGCTCGTCGCCTACGGAGTCGGCTGTGGAGTC
GCAGCCGCTGCTGCAGCTGGATGACTTGTCGGAGCATGTTTTCTCGTTGG
ACGTGAGGCATTCGGACGCGGCGCCGTTGCAGATGAACATTGGTCTTGAG
GATGTAGTCAGCATCATGGACGACACAGATCATACTGGGTTGTTTTCGGC
GTGCGGCGGCGGTAGCTGCGGTGCGTTTGCTGGCCTCGAGACTCGTTTCG
GGCCGTTGGACCTGGACAACTTGCCGGGCTTTGGCATGAATACAAAGGGT
GAGGGATTCTAA