Gchil6507.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6507.t1
Unique Name	Gchil6507.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	477

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:263030..264460 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMS076CT
Max annot lvl	2759\|Eukaryota
Evalue	1.09e-08
EggNOG OGs	28PFB@1\|root,2QW3A@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6507	Gchil6507	Gracilaria chilensis NLEC103_M9 male	gene	tig00004390_pilon 263030..264460 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6507.t1.start1	Gchil6507.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004390_pilon 263030..263032 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6507.t1.CDS1	Gchil6507.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004390_pilon 263030..264460 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6507.t1.exon1	Gchil6507.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004390_pilon 263030..264460 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6507.t1.stop1	Gchil6507.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004390_pilon 264458..264460 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6507.t1	Gchil6507.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004390_pilon 263030..264460 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004390_pilon:263030..264460+
coding sequence from alignment at tig00004390_pilon:263030..264460+

mRNA sequence

>Gchil6507.t1 ID=Gchil6507.t1|Name=Gchil6507.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp
MSSSDAPVVGISPENEQPIVKKLGNEADVVIKNPTDGPGTLPFSLSLPMI
STVAELKKELNSRYPGSPPIRAQRLIYAGKLLRDGQKFCEFLSPLQQPGT
PHTIHLVVSSPQQARQSSQNAPSPNPVSSPASTSADGGAAGPQAPRLPQF
AYNGHFLGGQVPLPLQEALYAQHLQIVESLLARTFQNGTGAQSDPRMLAQ
MHAADIAAAAAATNTPEGGAQPYAMPPPLAPGNGVFPGMMPMHPDVNVQN
MPHMNMAAAQHTQAHQRPLPQNQQQNGQPHHHQPQQPRAFNGFQLDVQIG
RHGVPNRIRNALNAQNQPHVRQFVFQIEINWALMAKLIFLVYLLGYEGNS
SRLFSLIIVAVGIYLWQTGHLGWLRRIVYTALPSPGRLIENLFPPRTQQP
DTQQEDASQQSPPARQNPYGYPALIFSFVYSFLYGFVCSLLPAWNPQPLP
RIEQIVQNPERPQEEPNMGANHDHVD*

spliced messenger RNA

>Gchil6507.t1 ID=Gchil6507.t1|Name=Gchil6507.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00004390_pilon:263030..264460+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCTTCGGATGCTCCAGTTGTCGGCATTTCTCCGGAAAATGAACA
ACCCATCGTGAAAAAGTTGGGCAATGAAGCCGACGTTGTCATTAAGAATC
CAACTGACGGACCGGGAACACTGCCGTTTTCCCTCAGTTTGCCCATGATT
AGCACTGTCGCAGAACTCAAGAAAGAGTTAAATTCGAGGTATCCGGGCTC
GCCCCCTATTCGAGCTCAGCGCCTGATATACGCTGGTAAGCTTCTGCGAG
ATGGGCAGAAGTTTTGTGAATTCCTTTCTCCTCTTCAACAACCTGGGACT
CCACATACAATTCATCTCGTCGTTTCATCTCCACAACAAGCTCGGCAGTC
CTCCCAAAATGCACCTTCGCCAAATCCGGTCAGTTCGCCTGCATCCACTA
GCGCCGATGGCGGAGCTGCTGGCCCACAAGCTCCCCGGCTTCCACAATTC
GCCTATAACGGACACTTTCTTGGAGGCCAGGTACCTCTTCCTCTTCAAGA
AGCTCTATATGCTCAGCATTTACAGATTGTTGAATCCCTTCTTGCGAGAA
CATTCCAGAATGGCACCGGCGCGCAATCCGACCCTCGCATGTTGGCTCAA
ATGCACGCCGCAGACATTGCAGCGGCAGCAGCTGCGACCAACACTCCAGA
GGGGGGAGCGCAACCATACGCTATGCCACCCCCACTCGCACCTGGTAATG
GTGTATTTCCGGGGATGATGCCTATGCACCCTGATGTGAATGTGCAAAAT
ATGCCTCATATGAACATGGCTGCCGCACAGCATACCCAAGCACATCAACG
TCCTTTACCGCAGAATcaacaacaaaatggacaacctcaccatcatcaac
cacaacaacCCAGGGCTTTTAATGGGTTTCAATTGGATGTGCAGATAGGC
AGACATGGGGTACCAAATAGAATCCGCAATGCACTCAACGCTCAGAACCA
GCCGCATGTGAGACAATTTGTTTTCCAGATTGAGATTAACTGGGCTCTTA
TGGCAAAACTGATCTTTCTTGTCTATTTACTCGGCTATGAAGGAAACTCC
AGTCGTTTATTCTCTCTGATCATTGTAGCTGTGGGAATTTATCTTTGGCA
GACAGGTCATCTTGGGTGGCTGCGTCGAATTGTTTACACTGCTCTGCCGA
GCCCAGGACGACTTATCGAGAATTTGTTTCCGCCACGAACTCAGCAGCCT
GATACCCAACAAGAAGATGCTTCTCAACAATCTCCACCAGCACGTCAGAA
TCCCTATGGCTACCCAGCTCTAATATTCTCTTTTGTGTACTCCTTTCTGT
ACGGTTTTGTTTGCTCTTTGTTACCCGCTTGGAACCCGCAGCCACTTCCA
CGCATTGAGCAAATAGTACAGAATCCAGAGCGTCCGCAAGAAGAACCGAA
CATGGGAGCAAATCATGACCATGTTGATTAG

protein sequence of Gchil6507.t1

>Gchil6507.t1 ID=Gchil6507.t1|Name=Gchil6507.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=477bp
MSSSDAPVVGISPENEQPIVKKLGNEADVVIKNPTDGPGTLPFSLSLPMI
STVAELKKELNSRYPGSPPIRAQRLIYAGKLLRDGQKFCEFLSPLQQPGT
PHTIHLVVSSPQQARQSSQNAPSPNPVSSPASTSADGGAAGPQAPRLPQF
AYNGHFLGGQVPLPLQEALYAQHLQIVESLLARTFQNGTGAQSDPRMLAQ
MHAADIAAAAAATNTPEGGAQPYAMPPPLAPGNGVFPGMMPMHPDVNVQN
MPHMNMAAAQHTQAHQRPLPQNQQQNGQPHHHQPQQPRAFNGFQLDVQIG
RHGVPNRIRNALNAQNQPHVRQFVFQIEINWALMAKLIFLVYLLGYEGNS
SRLFSLIIVAVGIYLWQTGHLGWLRRIVYTALPSPGRLIENLFPPRTQQP
DTQQEDASQQSPPARQNPYGYPALIFSFVYSFLYGFVCSLLPAWNPQPLP
RIEQIVQNPERPQEEPNMGANHDHVD*

mRNA from alignment at tig00004390_pilon:263030..264460+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6507.t1 ID=Gchil6507.t1|Name=Gchil6507.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00004390_pilon:263030..264460+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCTCTTCGGATGCTCCAGTTGTCGGCATTTCTCCGGAAAATGAACA
ACCCATCGTGAAAAAGTTGGGCAATGAAGCCGACGTTGTCATTAAGAATC
CAACTGACGGACCGGGAACACTGCCGTTTTCCCTCAGTTTGCCCATGATT
AGCACTGTCGCAGAACTCAAGAAAGAGTTAAATTCGAGGTATCCGGGCTC
GCCCCCTATTCGAGCTCAGCGCCTGATATACGCTGGTAAGCTTCTGCGAG
ATGGGCAGAAGTTTTGTGAATTCCTTTCTCCTCTTCAACAACCTGGGACT
CCACATACAATTCATCTCGTCGTTTCATCTCCACAACAAGCTCGGCAGTC
CTCCCAAAATGCACCTTCGCCAAATCCGGTCAGTTCGCCTGCATCCACTA
GCGCCGATGGCGGAGCTGCTGGCCCACAAGCTCCCCGGCTTCCACAATTC
GCCTATAACGGACACTTTCTTGGAGGCCAGGTACCTCTTCCTCTTCAAGA
AGCTCTATATGCTCAGCATTTACAGATTGTTGAATCCCTTCTTGCGAGAA
CATTCCAGAATGGCACCGGCGCGCAATCCGACCCTCGCATGTTGGCTCAA
ATGCACGCCGCAGACATTGCAGCGGCAGCAGCTGCGACCAACACTCCAGA
GGGGGGAGCGCAACCATACGCTATGCCACCCCCACTCGCACCTGGTAATG
GTGTATTTCCGGGGATGATGCCTATGCACCCTGATGTGAATGTGCAAAAT
ATGCCTCATATGAACATGGCTGCCGCACAGCATACCCAAGCACATCAACG
TCCTTTACCGCAGAATcaacaacaaaatggacaacctcaccatcatcaac
cacaacaacCCAGGGCTTTTAATGGGTTTCAATTGGATGTGCAGATAGGC
AGACATGGGGTACCAAATAGAATCCGCAATGCACTCAACGCTCAGAACCA
GCCGCATGTGAGACAATTTGTTTTCCAGATTGAGATTAACTGGGCTCTTA
TGGCAAAACTGATCTTTCTTGTCTATTTACTCGGCTATGAAGGAAACTCC
AGTCGTTTATTCTCTCTGATCATTGTAGCTGTGGGAATTTATCTTTGGCA
GACAGGTCATCTTGGGTGGCTGCGTCGAATTGTTTACACTGCTCTGCCGA
GCCCAGGACGACTTATCGAGAATTTGTTTCCGCCACGAACTCAGCAGCCT
GATACCCAACAAGAAGATGCTTCTCAACAATCTCCACCAGCACGTCAGAA
TCCCTATGGCTACCCAGCTCTAATATTCTCTTTTGTGTACTCCTTTCTGT
ACGGTTTTGTTTGCTCTTTGTTACCCGCTTGGAACCCGCAGCCACTTCCA
CGCATTGAGCAAATAGTACAGAATCCAGAGCGTCCGCAAGAAGAACCGAA
CATGGGAGCAAATCATGACCATGTTGATTAG

Coding sequence (CDS) from alignment at tig00004390_pilon:263030..264460+

>Gchil6507.t1 ID=Gchil6507.t1|Name=Gchil6507.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1431bp|location=Sequence derived from alignment at tig00004390_pilon:263030..264460+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCTCTTCGGATGCTCCAGTTGTCGGCATTTCTCCGGAAAATGAACA
ACCCATCGTGAAAAAGTTGGGCAATGAAGCCGACGTTGTCATTAAGAATC
CAACTGACGGACCGGGAACACTGCCGTTTTCCCTCAGTTTGCCCATGATT
AGCACTGTCGCAGAACTCAAGAAAGAGTTAAATTCGAGGTATCCGGGCTC
GCCCCCTATTCGAGCTCAGCGCCTGATATACGCTGGTAAGCTTCTGCGAG
ATGGGCAGAAGTTTTGTGAATTCCTTTCTCCTCTTCAACAACCTGGGACT
CCACATACAATTCATCTCGTCGTTTCATCTCCACAACAAGCTCGGCAGTC
CTCCCAAAATGCACCTTCGCCAAATCCGGTCAGTTCGCCTGCATCCACTA
GCGCCGATGGCGGAGCTGCTGGCCCACAAGCTCCCCGGCTTCCACAATTC
GCCTATAACGGACACTTTCTTGGAGGCCAGGTACCTCTTCCTCTTCAAGA
AGCTCTATATGCTCAGCATTTACAGATTGTTGAATCCCTTCTTGCGAGAA
CATTCCAGAATGGCACCGGCGCGCAATCCGACCCTCGCATGTTGGCTCAA
ATGCACGCCGCAGACATTGCAGCGGCAGCAGCTGCGACCAACACTCCAGA
GGGGGGAGCGCAACCATACGCTATGCCACCCCCACTCGCACCTGGTAATG
GTGTATTTCCGGGGATGATGCCTATGCACCCTGATGTGAATGTGCAAAAT
ATGCCTCATATGAACATGGCTGCCGCACAGCATACCCAAGCACATCAACG
TCCTTTACCGCAGAATcaacaacaaaatggacaacctcaccatcatcaac
cacaacaacCCAGGGCTTTTAATGGGTTTCAATTGGATGTGCAGATAGGC
AGACATGGGGTACCAAATAGAATCCGCAATGCACTCAACGCTCAGAACCA
GCCGCATGTGAGACAATTTGTTTTCCAGATTGAGATTAACTGGGCTCTTA
TGGCAAAACTGATCTTTCTTGTCTATTTACTCGGCTATGAAGGAAACTCC
AGTCGTTTATTCTCTCTGATCATTGTAGCTGTGGGAATTTATCTTTGGCA
GACAGGTCATCTTGGGTGGCTGCGTCGAATTGTTTACACTGCTCTGCCGA
GCCCAGGACGACTTATCGAGAATTTGTTTCCGCCACGAACTCAGCAGCCT
GATACCCAACAAGAAGATGCTTCTCAACAATCTCCACCAGCACGTCAGAA
TCCCTATGGCTACCCAGCTCTAATATTCTCTTTTGTGTACTCCTTTCTGT
ACGGTTTTGTTTGCTCTTTGTTACCCGCTTGGAACCCGCAGCCACTTCCA
CGCATTGAGCAAATAGTACAGAATCCAGAGCGTCCGCAAGAAGAACCGAA
CATGGGAGCAAATCATGACCATGTTGATTAG