Gchil6329.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6329.t1
Unique NameGchil6329.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length597
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:128898..130688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6329Gchil6329Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 128898..130688 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6329.t1.start1Gchil6329.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 128898..128900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6329.t1.CDS1Gchil6329.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 128898..130688 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6329.t1.exon1Gchil6329.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 128898..130688 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6329.t1.stop1Gchil6329.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 130686..130688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6329.t1Gchil6329.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 128898..130688 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6329.t1 ID=Gchil6329.t1|Name=Gchil6329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=597bp
MQAPPLFEFLPGARRGSADSEQSFETAASSRRSFRTHPHPDPVLMARLKA
LNFSSAPKRTPTNHPNLNSPVYPLSPCSPSLPRRFSSCHASTTSTAEKPT
APAPSKASMHHLPPLSPLSSMYDPNSTSASGSEEDASSSTSSDSAPASLV
HTRSMCDHRLRPSLLHRQAINAPAPASPVHNPHPQAPFRKALSQRHPASA
DLPAALRHRFSLDHASIAAAPPVTPLRNPYDSFSSNFDIPRGKVQHLPSK
PRPSTPSRLPRSKVFIRQNSTRSSVVDAAAVRHVPAAPGHHPVEPQLVPR
HVPLTPSQHFAMACEQQQRQLQLQHSEHNNSLLPVGQFSAQITNVAEDQM
YFSDEDEFDSQLLDTAKSPLAHNSPSDALSTKVRRAVSALRSISFQSNQV
EDFDTAWGQTLSVSQEKQNPSLASVASAKWRRARNKPVNRATRKQFECYS
ENDAGSERSSSSNVSQVRDRSMNAPNNIRGFAAMRMRANFGGPHKRSLWA
GSRRDRQQPHAVAAQLLVSGGGQGFLAASTELAEQRQALATVAPADAMDG
RNSMQKGPVDKYVEFIHASAQRETKGRFGPRNFPSRVLRLFRRKWN*
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spliced messenger RNA

>Gchil6329.t1 ID=Gchil6329.t1|Name=Gchil6329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000196_pilon:128898..130688+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCCCCGCCGCTCTTCGAGTTCCTCCCCGGTGCCCGCCGGGGGAG
CGCTGACTCCGAGCAGTCCTTCGAGACCGCCGCTTCCTCGCGCCGCTCCT
TCCGCACTCACCCGCACCCCGATCCCGTTCTAATGGCCCGTCTCAAAGCC
CTCAACTTCAGTTCCGCCCCAAAGCGCACCCCCACCAACCACCCCAACCT
CAATTCGCCCGTCTATCCGCTCTCGCCCTGTTCACCCTCCCTGCCTCGTC
GCTTCAGCTCGTGCCATGCTTCTACCACCTCCACTGCCGAAAAGCCCACC
GCCCCCGCTCCATCGAAAGCCTCCATGCACCACCTCCCGCCGCTCAGCCC
GCTTTCATCCATGTACGACCCCAATTCCACTTCTGCCTCGGGCTCTGAGG
AAGATGCCTCGTCCTCCACCTCTTCCGACTCGGCCCCGGCCTCGCTCGTA
CACACCCGCTCCATGTGCGACCATCGCTTGCGACCGTCTTTGCTTCATCG
CCAAGCCATCAATGCACCCGCCCCAGCCTCGCCAGTCCACAACCCCCACC
CCCAAGCTCCGTTTCGCAAGGCCCTGTCTCAGCGACACCCTGCTTCAGCT
GATCTGCCTGCTGCGCTGCGCCACCGCTTCTCGCTGGATCACGCCTCCAT
TGCCGCTGCGCCCCCCGTCACTCCGCTTCGAAACCCCTACGACAGCTTCT
CATCCAACTTTGACATACCGCGAGGCAAAGTGCAGCATCTGCCGTCCAAG
CCCCGCCCCTCCACCCCGTCCCGCCTTCCTCGCTCCAAGGTGTTCATCCG
CCAGAATTCCACGCGCTCCTCCGTCGTGGATGCCGCCGCTGTCAGGCATG
TGCCCGCTGCGCCGGGGCACCACCCCGTCGAGCCGCAATTAGTGCCGCGC
CATGTGCCGCTCACGCCGTCGCAGCACTTCGCAATGGCGTGCGAGCAGCA
GCAACGCCAGCTGCAGCTGCAGCACTCCGAGCACAACAACTCGCTGCTGC
CGGTGGGCCAGTTCTCCGCGCAGATCACCAACGTGGCCGAGGATCAAATG
TACTTTTCCGATGAGGACGAGTTCGACTCTCAGCTGTTGGACACCGCCAA
GTCGCCTCTGGCGCACAACTCACCGAGCGACGCACTGTCTACAAAGGTGC
GCCGCGCCGTCAGCGCGCTGCGCAGCATCTCGTTCCAGTCCAATCAGGTA
GAAGACTTCGACACCGCGTGGGGCCAGACGCTCTCCGTCTCGCAGGAGAA
GCAAAATCCCTCGCTCGCCAGCGTGGCGTCTGCCAAGTGGCGTCGCGCGC
GCAACAAGCCCGTCAACCGCGCCACAAGGAAGCAATTTGAATGCTACAGT
GAAAACGACGCGGGGAGTGAGCGTTCCAGCAGTTCCAACGTTTCGCAGGT
CAGGGATCGATCCATGAATGCACCCAACAACATCCGCGGCTTTGCCGCCA
TGAGAATGCGCGCCAACTTCGGCGGGCCGCACAAACGCTCCCTGTGGGCC
GGATCGCGAAGGGACAGACAACAGCCGCACGCAGTGGCCGCGCAGCTGCT
CGTGTCCGGCGGCGGGCAGGGGTTTCTGGCGGCGTCCACGGAGTTGGCTG
AACAGAGGCAAGCGCTGGCTACTGTGGCGCCGGCTGACGCTATGGACGGC
AGGAACTCAATGCAGAAGGGCCCGGTGGACAAGTATGTGGAGTTCATTCA
CGCGTCGGCGCAGCGCGAGACGAAGGGCAGATTTGGTCCGCGAAACTTCC
CGAGTCGTGTGCTCAGGCTGTTCAGAAGAAAATGGAACTAG
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protein sequence of Gchil6329.t1

>Gchil6329.t1 ID=Gchil6329.t1|Name=Gchil6329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=597bp
MQAPPLFEFLPGARRGSADSEQSFETAASSRRSFRTHPHPDPVLMARLKA
LNFSSAPKRTPTNHPNLNSPVYPLSPCSPSLPRRFSSCHASTTSTAEKPT
APAPSKASMHHLPPLSPLSSMYDPNSTSASGSEEDASSSTSSDSAPASLV
HTRSMCDHRLRPSLLHRQAINAPAPASPVHNPHPQAPFRKALSQRHPASA
DLPAALRHRFSLDHASIAAAPPVTPLRNPYDSFSSNFDIPRGKVQHLPSK
PRPSTPSRLPRSKVFIRQNSTRSSVVDAAAVRHVPAAPGHHPVEPQLVPR
HVPLTPSQHFAMACEQQQRQLQLQHSEHNNSLLPVGQFSAQITNVAEDQM
YFSDEDEFDSQLLDTAKSPLAHNSPSDALSTKVRRAVSALRSISFQSNQV
EDFDTAWGQTLSVSQEKQNPSLASVASAKWRRARNKPVNRATRKQFECYS
ENDAGSERSSSSNVSQVRDRSMNAPNNIRGFAAMRMRANFGGPHKRSLWA
GSRRDRQQPHAVAAQLLVSGGGQGFLAASTELAEQRQALATVAPADAMDG
RNSMQKGPVDKYVEFIHASAQRETKGRFGPRNFPSRVLRLFRRKWN*
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mRNA from alignment at tig00000196_pilon:128898..130688+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6329.t1 ID=Gchil6329.t1|Name=Gchil6329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000196_pilon:128898..130688+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGCCCCGCCGCTCTTCGAGTTCCTCCCCGGTGCCCGCCGGGGGAG
CGCTGACTCCGAGCAGTCCTTCGAGACCGCCGCTTCCTCGCGCCGCTCCT
TCCGCACTCACCCGCACCCCGATCCCGTTCTAATGGCCCGTCTCAAAGCC
CTCAACTTCAGTTCCGCCCCAAAGCGCACCCCCACCAACCACCCCAACCT
CAATTCGCCCGTCTATCCGCTCTCGCCCTGTTCACCCTCCCTGCCTCGTC
GCTTCAGCTCGTGCCATGCTTCTACCACCTCCACTGCCGAAAAGCCCACC
GCCCCCGCTCCATCGAAAGCCTCCATGCACCACCTCCCGCCGCTCAGCCC
GCTTTCATCCATGTACGACCCCAATTCCACTTCTGCCTCGGGCTCTGAGG
AAGATGCCTCGTCCTCCACCTCTTCCGACTCGGCCCCGGCCTCGCTCGTA
CACACCCGCTCCATGTGCGACCATCGCTTGCGACCGTCTTTGCTTCATCG
CCAAGCCATCAATGCACCCGCCCCAGCCTCGCCAGTCCACAACCCCCACC
CCCAAGCTCCGTTTCGCAAGGCCCTGTCTCAGCGACACCCTGCTTCAGCT
GATCTGCCTGCTGCGCTGCGCCACCGCTTCTCGCTGGATCACGCCTCCAT
TGCCGCTGCGCCCCCCGTCACTCCGCTTCGAAACCCCTACGACAGCTTCT
CATCCAACTTTGACATACCGCGAGGCAAAGTGCAGCATCTGCCGTCCAAG
CCCCGCCCCTCCACCCCGTCCCGCCTTCCTCGCTCCAAGGTGTTCATCCG
CCAGAATTCCACGCGCTCCTCCGTCGTGGATGCCGCCGCTGTCAGGCATG
TGCCCGCTGCGCCGGGGCACCACCCCGTCGAGCCGCAATTAGTGCCGCGC
CATGTGCCGCTCACGCCGTCGCAGCACTTCGCAATGGCGTGCGAGCAGCA
GCAACGCCAGCTGCAGCTGCAGCACTCCGAGCACAACAACTCGCTGCTGC
CGGTGGGCCAGTTCTCCGCGCAGATCACCAACGTGGCCGAGGATCAAATG
TACTTTTCCGATGAGGACGAGTTCGACTCTCAGCTGTTGGACACCGCCAA
GTCGCCTCTGGCGCACAACTCACCGAGCGACGCACTGTCTACAAAGGTGC
GCCGCGCCGTCAGCGCGCTGCGCAGCATCTCGTTCCAGTCCAATCAGGTA
GAAGACTTCGACACCGCGTGGGGCCAGACGCTCTCCGTCTCGCAGGAGAA
GCAAAATCCCTCGCTCGCCAGCGTGGCGTCTGCCAAGTGGCGTCGCGCGC
GCAACAAGCCCGTCAACCGCGCCACAAGGAAGCAATTTGAATGCTACAGT
GAAAACGACGCGGGGAGTGAGCGTTCCAGCAGTTCCAACGTTTCGCAGGT
CAGGGATCGATCCATGAATGCACCCAACAACATCCGCGGCTTTGCCGCCA
TGAGAATGCGCGCCAACTTCGGCGGGCCGCACAAACGCTCCCTGTGGGCC
GGATCGCGAAGGGACAGACAACAGCCGCACGCAGTGGCCGCGCAGCTGCT
CGTGTCCGGCGGCGGGCAGGGGTTTCTGGCGGCGTCCACGGAGTTGGCTG
AACAGAGGCAAGCGCTGGCTACTGTGGCGCCGGCTGACGCTATGGACGGC
AGGAACTCAATGCAGAAGGGCCCGGTGGACAAGTATGTGGAGTTCATTCA
CGCGTCGGCGCAGCGCGAGACGAAGGGCAGATTTGGTCCGCGAAACTTCC
CGAGTCGTGTGCTCAGGCTGTTCAGAAGAAAATGGAACTAG
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Coding sequence (CDS) from alignment at tig00000196_pilon:128898..130688+

>Gchil6329.t1 ID=Gchil6329.t1|Name=Gchil6329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1791bp|location=Sequence derived from alignment at tig00000196_pilon:128898..130688+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGCCCCGCCGCTCTTCGAGTTCCTCCCCGGTGCCCGCCGGGGGAG
CGCTGACTCCGAGCAGTCCTTCGAGACCGCCGCTTCCTCGCGCCGCTCCT
TCCGCACTCACCCGCACCCCGATCCCGTTCTAATGGCCCGTCTCAAAGCC
CTCAACTTCAGTTCCGCCCCAAAGCGCACCCCCACCAACCACCCCAACCT
CAATTCGCCCGTCTATCCGCTCTCGCCCTGTTCACCCTCCCTGCCTCGTC
GCTTCAGCTCGTGCCATGCTTCTACCACCTCCACTGCCGAAAAGCCCACC
GCCCCCGCTCCATCGAAAGCCTCCATGCACCACCTCCCGCCGCTCAGCCC
GCTTTCATCCATGTACGACCCCAATTCCACTTCTGCCTCGGGCTCTGAGG
AAGATGCCTCGTCCTCCACCTCTTCCGACTCGGCCCCGGCCTCGCTCGTA
CACACCCGCTCCATGTGCGACCATCGCTTGCGACCGTCTTTGCTTCATCG
CCAAGCCATCAATGCACCCGCCCCAGCCTCGCCAGTCCACAACCCCCACC
CCCAAGCTCCGTTTCGCAAGGCCCTGTCTCAGCGACACCCTGCTTCAGCT
GATCTGCCTGCTGCGCTGCGCCACCGCTTCTCGCTGGATCACGCCTCCAT
TGCCGCTGCGCCCCCCGTCACTCCGCTTCGAAACCCCTACGACAGCTTCT
CATCCAACTTTGACATACCGCGAGGCAAAGTGCAGCATCTGCCGTCCAAG
CCCCGCCCCTCCACCCCGTCCCGCCTTCCTCGCTCCAAGGTGTTCATCCG
CCAGAATTCCACGCGCTCCTCCGTCGTGGATGCCGCCGCTGTCAGGCATG
TGCCCGCTGCGCCGGGGCACCACCCCGTCGAGCCGCAATTAGTGCCGCGC
CATGTGCCGCTCACGCCGTCGCAGCACTTCGCAATGGCGTGCGAGCAGCA
GCAACGCCAGCTGCAGCTGCAGCACTCCGAGCACAACAACTCGCTGCTGC
CGGTGGGCCAGTTCTCCGCGCAGATCACCAACGTGGCCGAGGATCAAATG
TACTTTTCCGATGAGGACGAGTTCGACTCTCAGCTGTTGGACACCGCCAA
GTCGCCTCTGGCGCACAACTCACCGAGCGACGCACTGTCTACAAAGGTGC
GCCGCGCCGTCAGCGCGCTGCGCAGCATCTCGTTCCAGTCCAATCAGGTA
GAAGACTTCGACACCGCGTGGGGCCAGACGCTCTCCGTCTCGCAGGAGAA
GCAAAATCCCTCGCTCGCCAGCGTGGCGTCTGCCAAGTGGCGTCGCGCGC
GCAACAAGCCCGTCAACCGCGCCACAAGGAAGCAATTTGAATGCTACAGT
GAAAACGACGCGGGGAGTGAGCGTTCCAGCAGTTCCAACGTTTCGCAGGT
CAGGGATCGATCCATGAATGCACCCAACAACATCCGCGGCTTTGCCGCCA
TGAGAATGCGCGCCAACTTCGGCGGGCCGCACAAACGCTCCCTGTGGGCC
GGATCGCGAAGGGACAGACAACAGCCGCACGCAGTGGCCGCGCAGCTGCT
CGTGTCCGGCGGCGGGCAGGGGTTTCTGGCGGCGTCCACGGAGTTGGCTG
AACAGAGGCAAGCGCTGGCTACTGTGGCGCCGGCTGACGCTATGGACGGC
AGGAACTCAATGCAGAAGGGCCCGGTGGACAAGTATGTGGAGTTCATTCA
CGCGTCGGCGCAGCGCGAGACGAAGGGCAGATTTGGTCCGCGAAACTTCC
CGAGTCGTGTGCTCAGGCTGTTCAGAAGAAAATGGAACTAG
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