Gchil6321.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6321.t1
Unique NameGchil6321.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:106571..107368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102107.XP_008246475.1
PFAMsCyclin
Max annot lvl35493|Streptophyta
Evalue8.31e-15
EggNOG OGsKOG1674@1|root,KOG1674@2759|Eukaryota,37T29@33090|Viridiplantae,3G85D@35493|Streptophyta,4JGJ3@91835|fabids
Descriptioncyclin-P3-1-like
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6321Gchil6321Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 106571..107368 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6321.t1.stop1Gchil6321.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 106571..106573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6321.t1.CDS1Gchil6321.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 106571..107368 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6321.t1.exon1Gchil6321.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 106571..107368 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6321.t1.start1Gchil6321.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 107366..107368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6321.t1Gchil6321.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 106571..107368 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6321.t1 ID=Gchil6321.t1|Name=Gchil6321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=266bp
MPPLSSTHAQLLPASRRRQRRKRQYFTMALEQLTPEQIMLPSTASRLLLL
RPQFEPPSCSAADNYNSLFIVRALSDVLERTCERNASCTLHPNPHIDART
TSMFYSCTVAPFSLSCYVFQLVTRLQLSRSVYIVALVFLDRVRLVDQRLC
LIHLNVHRVLATALCVADKYLEDECHRNSTFCTIAGIPSLAELNSMEHEF
LRRLQWNCWVSAETFEEYDTAVFSANADERVVDAQAAVALESAAVMAART
LSMMTSATATTTSHV*
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spliced messenger RNA

>Gchil6321.t1 ID=Gchil6321.t1|Name=Gchil6321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000196_pilon:106571..107368- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCACTCTCCTCCACCCACGCCCAGCTACTGCCCGCCTCACGCCG
CCGCCAACGACGGAAGCGCCAGTACTTCACAATGGCGTTGGAGCAGCTCA
CCCCCGAGCAAATCATGCTGCCGTCCACCGCCTCGCGTCTGCTTCTGTTG
CGCCCGCAGTTCGAGCCCCCGTCGTGCTCGGCCGCCGACAATTACAACTC
CTTGTTCATTGTGCGCGCCCTTTCCGACGTGCTGGAGCGCACGTGTGAGC
GCAACGCCTCTTGCACGCTGCATCCCAACCCGCACATTGACGCACGCACC
ACCAGCATGTTTTATAGCTGCACCGTTGCCCCCTTTTCGCTCTCGTGCTA
TGTGTTCCAGCTTGTCACCCGCCTCCAGCTCAGCCGCAGTGTCTATATCG
TCGCCCTTGTGTTTTTGGACCGCGTGCGCCTCGTCGATCAGCGACTGTGT
CTCATTCATCTTAACGTGCACCGCGTCCTGGCTACCGCTCTGTGTGTGGC
CGACAAGTACCTCGAAGATGAATGTCATCGCAACTCTACTTTCTGCACAA
TTGCGGGAATCCCTTCTCTCGCCGAACTCAATTCCATGGAACACGAGTTC
CTCAGAAGACTGCAGTGGAACTGCTGGGTGTCCGCCGAGACCTTTGAAGA
ATATGATACCGCCGTGTTTAGTGCCAATGCCGATGAGCGTGTTGTAGACG
CTCAGGCCGCTGTAGCGCTCGAATCTGCCGCTGTTATGGCTGCAAGAACG
TTGTCTATGATGACTAGTGCTACCGCGACTACTACCTCTCATGTGTAA
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protein sequence of Gchil6321.t1

>Gchil6321.t1 ID=Gchil6321.t1|Name=Gchil6321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=266bp
MPPLSSTHAQLLPASRRRQRRKRQYFTMALEQLTPEQIMLPSTASRLLLL
RPQFEPPSCSAADNYNSLFIVRALSDVLERTCERNASCTLHPNPHIDART
TSMFYSCTVAPFSLSCYVFQLVTRLQLSRSVYIVALVFLDRVRLVDQRLC
LIHLNVHRVLATALCVADKYLEDECHRNSTFCTIAGIPSLAELNSMEHEF
LRRLQWNCWVSAETFEEYDTAVFSANADERVVDAQAAVALESAAVMAART
LSMMTSATATTTSHV*
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mRNA from alignment at tig00000196_pilon:106571..107368-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6321.t1 ID=Gchil6321.t1|Name=Gchil6321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000196_pilon:106571..107368- (Gracilaria chilensis NLEC103_M9 male)
ATGCCACCACTCTCCTCCACCCACGCCCAGCTACTGCCCGCCTCACGCCG
CCGCCAACGACGGAAGCGCCAGTACTTCACAATGGCGTTGGAGCAGCTCA
CCCCCGAGCAAATCATGCTGCCGTCCACCGCCTCGCGTCTGCTTCTGTTG
CGCCCGCAGTTCGAGCCCCCGTCGTGCTCGGCCGCCGACAATTACAACTC
CTTGTTCATTGTGCGCGCCCTTTCCGACGTGCTGGAGCGCACGTGTGAGC
GCAACGCCTCTTGCACGCTGCATCCCAACCCGCACATTGACGCACGCACC
ACCAGCATGTTTTATAGCTGCACCGTTGCCCCCTTTTCGCTCTCGTGCTA
TGTGTTCCAGCTTGTCACCCGCCTCCAGCTCAGCCGCAGTGTCTATATCG
TCGCCCTTGTGTTTTTGGACCGCGTGCGCCTCGTCGATCAGCGACTGTGT
CTCATTCATCTTAACGTGCACCGCGTCCTGGCTACCGCTCTGTGTGTGGC
CGACAAGTACCTCGAAGATGAATGTCATCGCAACTCTACTTTCTGCACAA
TTGCGGGAATCCCTTCTCTCGCCGAACTCAATTCCATGGAACACGAGTTC
CTCAGAAGACTGCAGTGGAACTGCTGGGTGTCCGCCGAGACCTTTGAAGA
ATATGATACCGCCGTGTTTAGTGCCAATGCCGATGAGCGTGTTGTAGACG
CTCAGGCCGCTGTAGCGCTCGAATCTGCCGCTGTTATGGCTGCAAGAACG
TTGTCTATGATGACTAGTGCTACCGCGACTACTACCTCTCATGTGTAA
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Coding sequence (CDS) from alignment at tig00000196_pilon:106571..107368-

>Gchil6321.t1 ID=Gchil6321.t1|Name=Gchil6321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00000196_pilon:106571..107368- (Gracilaria chilensis NLEC103_M9 male)
ATGCCACCACTCTCCTCCACCCACGCCCAGCTACTGCCCGCCTCACGCCG
CCGCCAACGACGGAAGCGCCAGTACTTCACAATGGCGTTGGAGCAGCTCA
CCCCCGAGCAAATCATGCTGCCGTCCACCGCCTCGCGTCTGCTTCTGTTG
CGCCCGCAGTTCGAGCCCCCGTCGTGCTCGGCCGCCGACAATTACAACTC
CTTGTTCATTGTGCGCGCCCTTTCCGACGTGCTGGAGCGCACGTGTGAGC
GCAACGCCTCTTGCACGCTGCATCCCAACCCGCACATTGACGCACGCACC
ACCAGCATGTTTTATAGCTGCACCGTTGCCCCCTTTTCGCTCTCGTGCTA
TGTGTTCCAGCTTGTCACCCGCCTCCAGCTCAGCCGCAGTGTCTATATCG
TCGCCCTTGTGTTTTTGGACCGCGTGCGCCTCGTCGATCAGCGACTGTGT
CTCATTCATCTTAACGTGCACCGCGTCCTGGCTACCGCTCTGTGTGTGGC
CGACAAGTACCTCGAAGATGAATGTCATCGCAACTCTACTTTCTGCACAA
TTGCGGGAATCCCTTCTCTCGCCGAACTCAATTCCATGGAACACGAGTTC
CTCAGAAGACTGCAGTGGAACTGCTGGGTGTCCGCCGAGACCTTTGAAGA
ATATGATACCGCCGTGTTTAGTGCCAATGCCGATGAGCGTGTTGTAGACG
CTCAGGCCGCTGTAGCGCTCGAATCTGCCGCTGTTATGGCTGCAAGAACG
TTGTCTATGATGACTAGTGCTACCGCGACTACTACCTCTCATGTGTAA
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