Gchil632.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil632.t1
Unique NameGchil632.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:697442..698341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7918.ENSLOCP00000007671
Max annot lvl33208|Metazoa
Evalue0.000365
EggNOG OGs2E5MK@1|root,2SCER@2759|Eukaryota,3ABGF@33154|Opisthokonta,3BVMF@33208|Metazoa,3DCG3@33213|Bilateria,48H2B@7711|Chordata,49GWV@7742|Vertebrata,4A7YP@7898|Actinopterygii
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil632Gchil632Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 697442..698341 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil632.t1.stop1Gchil632.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 697442..697444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil632.t1.CDS1Gchil632.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 697442..698341 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil632.t1.exon1Gchil632.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 697442..698341 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil632.t1.start1Gchil632.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 698339..698341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil632.t1Gchil632.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 697442..698341 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil632.t1 ID=Gchil632.t1|Name=Gchil632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=300bp
MMIGTSLLLTPSILLLYQTTVELDPVSIHLARVVGLLLLSSSFVSHRAFS
SRDRLDKYVVILSRAMTALLFLSISIYARIHYPEWSDELLYTSCMGSFFW
LLPHLFYAVSALPLGRTDSIRVSISLVIDFFLTVAAGFLWFGFPQAMLRM
LIRLNLNSVSVTISRFLGALLIGNALSSILAAGLCSVRTKQYLFSVKIIT
AIGLIVLVVFGHAWGESFITSHILIGSAATVLWGLNSALGYMMIAVIYAG
CYEKKRRPLHSFLSSHSVSAGDTSNAALTFSKKTGKFPRRTSFDSIIKQ*
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spliced messenger RNA

>Gchil632.t1 ID=Gchil632.t1|Name=Gchil632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00004380_pilon:697442..698341- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGATAGGGACATCGCTGCTTCTTACGCCAAGTATTTTGCTCTTGTA
TCAGACAACAGTTGAACTCGACCCTGTTTCAATTCACCTGGCCCGAGTTG
TCGGACTTTTGCTCCTTTCGTCGTCATTTGTGTCGCACCGTGCATTCTCT
AGCAGAGATAGACTTGACAAGTATGTCGTCATTCTTTCCCGAGCAATGAC
TGCACTTCTATTCCTGTCGATTTCTATTTACGCGAGAATCCATTATCCTG
AATGGAGCGATGAATTACTTTACACTTCGTGCATGGGTTCATTTTTTTGG
CTTCTTCCACATTTATTCTACGCAGTTTCTGCGCTTCCTTTGGGAAGAAC
AGACTCGATCCGAGTTTCTATTTCTCTCGTGATTGACTTTTTCCTGACAG
TCGCTGCGGGGTTCCTCTGGTTTGGTTTTCCACAGGCTATGCTACGCATG
CTGATCAGATTGAATCTTAACTCTGTATCGGTAACCATCTCACGTTTTCT
CGGGGCATTGCTGATTGGAAACGCTCTCAGTTCAATTCTGGCCGCTGGTC
TATGCTCTGTAAGAACTAAGCAATATCTTTTCTCCGTTAAGATCATAACT
GCAATAGGTCTGATAGTTCTCGTTGTCTTTGGACACGCGTGGGGAGAAAG
CTTCATCACGAGTCATATATTAATAGGTTCTGCAGCAACCGTATTGTGGG
GACTGAACTCAGCGCTGGGCTACATGATGATAGCCGTTATCTACGCAGGG
TGTTATGAAAAGAAGCGAAGACCTCTCCATTCCTTTCTTTCTTCCCATTC
TGTGTCTGCTGGCGATACATCAAATGCAGCGCTAACGTTCTCGAAGAAAA
CAGGCAAGTTTCCCAGGCGAACATCTTTTGACTCCATCATCAAGCAATGA
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protein sequence of Gchil632.t1

>Gchil632.t1 ID=Gchil632.t1|Name=Gchil632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=300bp
MMIGTSLLLTPSILLLYQTTVELDPVSIHLARVVGLLLLSSSFVSHRAFS
SRDRLDKYVVILSRAMTALLFLSISIYARIHYPEWSDELLYTSCMGSFFW
LLPHLFYAVSALPLGRTDSIRVSISLVIDFFLTVAAGFLWFGFPQAMLRM
LIRLNLNSVSVTISRFLGALLIGNALSSILAAGLCSVRTKQYLFSVKIIT
AIGLIVLVVFGHAWGESFITSHILIGSAATVLWGLNSALGYMMIAVIYAG
CYEKKRRPLHSFLSSHSVSAGDTSNAALTFSKKTGKFPRRTSFDSIIKQ*
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mRNA from alignment at tig00004380_pilon:697442..698341-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil632.t1 ID=Gchil632.t1|Name=Gchil632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00004380_pilon:697442..698341- (Gracilaria chilensis NLEC103_M9 male)
ATGATGATAGGGACATCGCTGCTTCTTACGCCAAGTATTTTGCTCTTGTA
TCAGACAACAGTTGAACTCGACCCTGTTTCAATTCACCTGGCCCGAGTTG
TCGGACTTTTGCTCCTTTCGTCGTCATTTGTGTCGCACCGTGCATTCTCT
AGCAGAGATAGACTTGACAAGTATGTCGTCATTCTTTCCCGAGCAATGAC
TGCACTTCTATTCCTGTCGATTTCTATTTACGCGAGAATCCATTATCCTG
AATGGAGCGATGAATTACTTTACACTTCGTGCATGGGTTCATTTTTTTGG
CTTCTTCCACATTTATTCTACGCAGTTTCTGCGCTTCCTTTGGGAAGAAC
AGACTCGATCCGAGTTTCTATTTCTCTCGTGATTGACTTTTTCCTGACAG
TCGCTGCGGGGTTCCTCTGGTTTGGTTTTCCACAGGCTATGCTACGCATG
CTGATCAGATTGAATCTTAACTCTGTATCGGTAACCATCTCACGTTTTCT
CGGGGCATTGCTGATTGGAAACGCTCTCAGTTCAATTCTGGCCGCTGGTC
TATGCTCTGTAAGAACTAAGCAATATCTTTTCTCCGTTAAGATCATAACT
GCAATAGGTCTGATAGTTCTCGTTGTCTTTGGACACGCGTGGGGAGAAAG
CTTCATCACGAGTCATATATTAATAGGTTCTGCAGCAACCGTATTGTGGG
GACTGAACTCAGCGCTGGGCTACATGATGATAGCCGTTATCTACGCAGGG
TGTTATGAAAAGAAGCGAAGACCTCTCCATTCCTTTCTTTCTTCCCATTC
TGTGTCTGCTGGCGATACATCAAATGCAGCGCTAACGTTCTCGAAGAAAA
CAGGCAAGTTTCCCAGGCGAACATCTTTTGACTCCATCATCAAGCAATGA
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Coding sequence (CDS) from alignment at tig00004380_pilon:697442..698341-

>Gchil632.t1 ID=Gchil632.t1|Name=Gchil632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00004380_pilon:697442..698341- (Gracilaria chilensis NLEC103_M9 male)
ATGATGATAGGGACATCGCTGCTTCTTACGCCAAGTATTTTGCTCTTGTA
TCAGACAACAGTTGAACTCGACCCTGTTTCAATTCACCTGGCCCGAGTTG
TCGGACTTTTGCTCCTTTCGTCGTCATTTGTGTCGCACCGTGCATTCTCT
AGCAGAGATAGACTTGACAAGTATGTCGTCATTCTTTCCCGAGCAATGAC
TGCACTTCTATTCCTGTCGATTTCTATTTACGCGAGAATCCATTATCCTG
AATGGAGCGATGAATTACTTTACACTTCGTGCATGGGTTCATTTTTTTGG
CTTCTTCCACATTTATTCTACGCAGTTTCTGCGCTTCCTTTGGGAAGAAC
AGACTCGATCCGAGTTTCTATTTCTCTCGTGATTGACTTTTTCCTGACAG
TCGCTGCGGGGTTCCTCTGGTTTGGTTTTCCACAGGCTATGCTACGCATG
CTGATCAGATTGAATCTTAACTCTGTATCGGTAACCATCTCACGTTTTCT
CGGGGCATTGCTGATTGGAAACGCTCTCAGTTCAATTCTGGCCGCTGGTC
TATGCTCTGTAAGAACTAAGCAATATCTTTTCTCCGTTAAGATCATAACT
GCAATAGGTCTGATAGTTCTCGTTGTCTTTGGACACGCGTGGGGAGAAAG
CTTCATCACGAGTCATATATTAATAGGTTCTGCAGCAACCGTATTGTGGG
GACTGAACTCAGCGCTGGGCTACATGATGATAGCCGTTATCTACGCAGGG
TGTTATGAAAAGAAGCGAAGACCTCTCCATTCCTTTCTTTCTTCCCATTC
TGTGTCTGCTGGCGATACATCAAATGCAGCGCTAACGTTCTCGAAGAAAA
CAGGCAAGTTTCCCAGGCGAACATCTTTTGACTCCATCATCAAGCAATGA
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