Gchil624.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil624.t1
Unique Name	Gchil624.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	341

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004380_pilon	contig	tig00004380_pilon:676046..677068 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	296587.XP_002505168.1
PFAMs	DUF2232
Max annot lvl	3041\|Chlorophyta
Evalue	9.17e-12
EggNOG OGs	COG4241@1\|root,2QQ38@2759\|Eukaryota,37KIJ@33090\|Viridiplantae,34I6F@3041\|Chlorophyta
Description	Predicted membrane protein (DUF2232)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil624	Gchil624	Gracilaria chilensis NLEC103_M9 male	gene	tig00004380_pilon 676046..677068 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil624.t1.start1	Gchil624.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004380_pilon 676046..676048 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil624.t1.CDS1	Gchil624.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004380_pilon 676046..677068 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil624.t1.exon1	Gchil624.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004380_pilon 676046..677068 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil624.t1.stop1	Gchil624.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004380_pilon 677066..677068 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil624.t1	Gchil624.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004380_pilon 676046..677068 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004380_pilon:676046..677068+
coding sequence from alignment at tig00004380_pilon:676046..677068+

mRNA sequence

>Gchil624.t1 ID=Gchil624.t1|Name=Gchil624.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=341bp
MTHLLTKGKSTSKDLSINRAFRIGASSSCFVVGATSVQIYRDPPRGDSRF
RYTPACSFQSGPPVFSRIRRWFNRKQSRPVQDQRKRKATDADWEKLIIEF
EERSGGTKVVPPDSPILNPKQYETLPYLECAYMTALTTVLWYLGRVFRLD
AVLLLFYPLPTIYIASKYGLKFADWTIMSVLFFVFTIVGPLFAITYFLNT
GLLTIVYARALWWRFGWFAALLFGAAAKAVGLCLQLLFISPILRYNAWKA
VVEQVTILLQNMAKLLGAVGIKMMAPTASAVQIALIIVIAFHSLYHVFFT
LLMSSIVLRRIEADVELKRSPVKMPLVDALIRNAKNMRRR*

spliced messenger RNA

>Gchil624.t1 ID=Gchil624.t1|Name=Gchil624.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00004380_pilon:676046..677068+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACATCTTTTGACTAAAGGGAAGTCTACTTCGAAAGATTTAAGCAT
CAACAGGGCTTTCCGGATAGGAGCATCAAGTTCATGCTTTGTCGTGGGCG
CAACATCGGTTCAAATATACAGAGATCCCCCAAGAGGCGACAGCCGTTTC
AGGTATACACCTGCATGCAGTTTCCAATCTGGGCCTCCTGTATTTTCGCG
TATCCGTCGATGGTTCAACCGAAAACAATCACGTCCTGTTCAAGATCAAA
GAAAACGAAAAGCAACCGATGCGGACTGGGAAAAGCTCATTATAGAATTC
GAAGAGCGAAGTGGAGGTACGAAAGTCGTCCCCCCGGATAGCCCCATACT
TAACCCAAAGCAGTATGAAACATTACCGTACTTAGAATGTGCGTATATGA
CGGCATTGACGACGGTTCTTTGGTACTTGGGTCGCGTGTTTCGCCTGGAT
GCTGTCCTATTGCTGTTTTATCCATTGCCAACCATCTACATCGCCTCTAA
ATATGGCTTGAAATTTGCCGACTGGACGATAATGTCAGTATTGTTTTTCG
TATTTACAATTGTTGGTCCACTCTTCGCCATCACTTACTTCTTGAACACA
GGACTACTGACAATCGTTTACGCGAGAGCTTTGTGGTGGAGGTTCGGATG
GTTTGCAGCTTTGCTATTTGGGGCGGCGGCAAAGGCTGTTGGACTTTGCT
TACAGCTATTGTTCATCTCCCCTATTCTGCGATATAATGCATGGAAAGCA
GTTGTTGAACAAGTGACAATCCTCTTACAGAATATGGCCAAGTTGCTCGG
AGCTGTGGGGATCAAGATGATGGCCCCCACGGCCTCAGCGGTACAGATTG
CACTAATCATCGTAATTGCATTTCACTCCTTATATCATGTCTTTTTCACC
TTGCTCATGTCAAGCATTGTTTTGCGTCGCATCGAAGCAGACGTTGAACT
GAAAAGAAGCCCGGTTAAGATGCCGCTGGTTGACGCTCTTATTCGAAATG
CGAAAAATATGAGACGTCGATGA

protein sequence of Gchil624.t1

>Gchil624.t1 ID=Gchil624.t1|Name=Gchil624.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=341bp
MTHLLTKGKSTSKDLSINRAFRIGASSSCFVVGATSVQIYRDPPRGDSRF
RYTPACSFQSGPPVFSRIRRWFNRKQSRPVQDQRKRKATDADWEKLIIEF
EERSGGTKVVPPDSPILNPKQYETLPYLECAYMTALTTVLWYLGRVFRLD
AVLLLFYPLPTIYIASKYGLKFADWTIMSVLFFVFTIVGPLFAITYFLNT
GLLTIVYARALWWRFGWFAALLFGAAAKAVGLCLQLLFISPILRYNAWKA
VVEQVTILLQNMAKLLGAVGIKMMAPTASAVQIALIIVIAFHSLYHVFFT
LLMSSIVLRRIEADVELKRSPVKMPLVDALIRNAKNMRRR*

mRNA from alignment at tig00004380_pilon:676046..677068+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil624.t1 ID=Gchil624.t1|Name=Gchil624.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00004380_pilon:676046..677068+ (Gracilaria chilensis NLEC103_M9 male)
ATGACACATCTTTTGACTAAAGGGAAGTCTACTTCGAAAGATTTAAGCAT
CAACAGGGCTTTCCGGATAGGAGCATCAAGTTCATGCTTTGTCGTGGGCG
CAACATCGGTTCAAATATACAGAGATCCCCCAAGAGGCGACAGCCGTTTC
AGGTATACACCTGCATGCAGTTTCCAATCTGGGCCTCCTGTATTTTCGCG
TATCCGTCGATGGTTCAACCGAAAACAATCACGTCCTGTTCAAGATCAAA
GAAAACGAAAAGCAACCGATGCGGACTGGGAAAAGCTCATTATAGAATTC
GAAGAGCGAAGTGGAGGTACGAAAGTCGTCCCCCCGGATAGCCCCATACT
TAACCCAAAGCAGTATGAAACATTACCGTACTTAGAATGTGCGTATATGA
CGGCATTGACGACGGTTCTTTGGTACTTGGGTCGCGTGTTTCGCCTGGAT
GCTGTCCTATTGCTGTTTTATCCATTGCCAACCATCTACATCGCCTCTAA
ATATGGCTTGAAATTTGCCGACTGGACGATAATGTCAGTATTGTTTTTCG
TATTTACAATTGTTGGTCCACTCTTCGCCATCACTTACTTCTTGAACACA
GGACTACTGACAATCGTTTACGCGAGAGCTTTGTGGTGGAGGTTCGGATG
GTTTGCAGCTTTGCTATTTGGGGCGGCGGCAAAGGCTGTTGGACTTTGCT
TACAGCTATTGTTCATCTCCCCTATTCTGCGATATAATGCATGGAAAGCA
GTTGTTGAACAAGTGACAATCCTCTTACAGAATATGGCCAAGTTGCTCGG
AGCTGTGGGGATCAAGATGATGGCCCCCACGGCCTCAGCGGTACAGATTG
CACTAATCATCGTAATTGCATTTCACTCCTTATATCATGTCTTTTTCACC
TTGCTCATGTCAAGCATTGTTTTGCGTCGCATCGAAGCAGACGTTGAACT
GAAAAGAAGCCCGGTTAAGATGCCGCTGGTTGACGCTCTTATTCGAAATG
CGAAAAATATGAGACGTCGATGA

Coding sequence (CDS) from alignment at tig00004380_pilon:676046..677068+

>Gchil624.t1 ID=Gchil624.t1|Name=Gchil624.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1023bp|location=Sequence derived from alignment at tig00004380_pilon:676046..677068+ (Gracilaria chilensis NLEC103_M9 male)
ATGACACATCTTTTGACTAAAGGGAAGTCTACTTCGAAAGATTTAAGCAT
CAACAGGGCTTTCCGGATAGGAGCATCAAGTTCATGCTTTGTCGTGGGCG
CAACATCGGTTCAAATATACAGAGATCCCCCAAGAGGCGACAGCCGTTTC
AGGTATACACCTGCATGCAGTTTCCAATCTGGGCCTCCTGTATTTTCGCG
TATCCGTCGATGGTTCAACCGAAAACAATCACGTCCTGTTCAAGATCAAA
GAAAACGAAAAGCAACCGATGCGGACTGGGAAAAGCTCATTATAGAATTC
GAAGAGCGAAGTGGAGGTACGAAAGTCGTCCCCCCGGATAGCCCCATACT
TAACCCAAAGCAGTATGAAACATTACCGTACTTAGAATGTGCGTATATGA
CGGCATTGACGACGGTTCTTTGGTACTTGGGTCGCGTGTTTCGCCTGGAT
GCTGTCCTATTGCTGTTTTATCCATTGCCAACCATCTACATCGCCTCTAA
ATATGGCTTGAAATTTGCCGACTGGACGATAATGTCAGTATTGTTTTTCG
TATTTACAATTGTTGGTCCACTCTTCGCCATCACTTACTTCTTGAACACA
GGACTACTGACAATCGTTTACGCGAGAGCTTTGTGGTGGAGGTTCGGATG
GTTTGCAGCTTTGCTATTTGGGGCGGCGGCAAAGGCTGTTGGACTTTGCT
TACAGCTATTGTTCATCTCCCCTATTCTGCGATATAATGCATGGAAAGCA
GTTGTTGAACAAGTGACAATCCTCTTACAGAATATGGCCAAGTTGCTCGG
AGCTGTGGGGATCAAGATGATGGCCCCCACGGCCTCAGCGGTACAGATTG
CACTAATCATCGTAATTGCATTTCACTCCTTATATCATGTCTTTTTCACC
TTGCTCATGTCAAGCATTGTTTTGCGTCGCATCGAAGCAGACGTTGAACT
GAAAAGAAGCCCGGTTAAGATGCCGCTGGTTGACGCTCTTATTCGAAATG
CGAAAAATATGAGACGTCGATGA