Gchil596.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil596.t1
Unique Name	Gchil596.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	329

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004380_pilon	contig	tig00004380_pilon:450253..451239 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1463885.KL578406_gene2413
PFAMs	PBP
Max annot lvl	201174\|Actinobacteria
KEGG ko	ko:K06910
Evalue	3.01e-07
EggNOG OGs	COG1881@1\|root,COG1881@2\|Bacteria,2IIR9@201174\|Actinobacteria
Description	Phosphatidylethanolamine-binding protein
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil596	Gchil596	Gracilaria chilensis NLEC103_M9 male	gene	tig00004380_pilon 450253..451239 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil596.t1.start1	Gchil596.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004380_pilon 450253..450255 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil596.t1.CDS1	Gchil596.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004380_pilon 450253..451239 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil596.t1.exon1	Gchil596.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004380_pilon 450253..451239 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil596.t1.stop1	Gchil596.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004380_pilon 451237..451239 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil596.t1	Gchil596.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004380_pilon 450253..451239 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004380_pilon:450253..451239+
coding sequence from alignment at tig00004380_pilon:450253..451239+

mRNA sequence

>Gchil596.t1 ID=Gchil596.t1|Name=Gchil596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=329bp
MGKDRDEAPPPHPPACSPLLFPPERIPLAPAHIDHNASTPSAYESPTPPS
SPSIDFPYGAVARAMSPSLDTDAPRERRTLRVSDPLQTVHLITDSSQSDH
SHQPYLDRSQVELAQFRQRITDTTILAFAVFVVTGIVFVIMTTGFTAMVA
NQNSARLQIYSAWPDGGVIPPEYGCLAPDGVPISIPLHWQDVPPEATNLV
ILFSHPGAFHIAEVDPVHWFVMGIPIGPGHSDHIPPNASINPSLLPHGAI
QRPNAYSHQGYYWPPCTNATGDFTILAYAVEAPAVIEDLHDAREIMMRFD
GVPFARLSGTYTHAPLHQNGHVPYSWHA*

spliced messenger RNA

>Gchil596.t1 ID=Gchil596.t1|Name=Gchil596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00004380_pilon:450253..451239+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAAAGACCGCGACGAGGCCCCACCGCCACATCCGCCCGCGTGCTC
ACCGTTGCTCTTTCCGCCGGAGCGCATCCCGCTGGCGCCCGCGCACATCG
ACCACAATGCCTCCACGCCCTCCGCCTACGAGTCTCCCACCCCGCCCTCC
TCCCCGTCAATCGACTTCCCCTACGGCGCCGTCGCACGCGCCATGTCACC
CAGTCTTGACACTGATGCGCCCCGCGAGCGAAGAACCTTGAGGGTGTCCG
ATCCGTTACAGACCGTCCATTTGATCACCGACTCGTCGCAAAGCGATCAT
TCTCACCAGCCCTATCTTGACCGCTCTCAAGTCGAACTTGCCCAGTTTCG
CCAACGTATTACCGATACCACCATTCTTGCTTTTGCTGTTTTTGTCGTCA
CGGGTATAGTGTTTGTTATCATGACTACGGGTTTCACTGCTATGGTTGCC
AACCAGAACTCAGCTCGACTGCAGATTTACTCCGCGTGGCCGGATGGCGG
TGTCATTCCGCCCGAGTATGGCTGCCTTGCTCCAGATGGTGTCCCCATTT
CAATCCCTCTGCACTGGCAAGATGTCCCCCCAGAAGCTACCAATCTCGTT
ATTCTCTTTTCTCATCCTGGCGCCTTTCACATCGCTGAAGTCGACCCGGT
ACATTGGTTCGTCATGGGCATCCCAATCGGACCAGGCCACAGCGATCACA
TTCCGCCCAATGCATCTATCAATCCATCATTGCTACCGCATGGCGCCATT
CAACGTCCGAATGCATACTCGCATCAAGGCTACTATTGGCCGCCGTGCAC
GAATGCAACCGGCGATTTTACTATACTTGCGTACGCTGTTGAAGCACCTG
CTGTCATTGAGGATCTGCACGATGCTAGGGAAATTATGATGCGCTTTGAT
GGCGTGCCGTTCGCTAGGCTTAGCGGCACATATACTCATGCTCCTCTACA
CCAGAATGGTCATGTCCCGTACTCGTGGCATGCCTGA

protein sequence of Gchil596.t1

>Gchil596.t1 ID=Gchil596.t1|Name=Gchil596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=329bp
MGKDRDEAPPPHPPACSPLLFPPERIPLAPAHIDHNASTPSAYESPTPPS
SPSIDFPYGAVARAMSPSLDTDAPRERRTLRVSDPLQTVHLITDSSQSDH
SHQPYLDRSQVELAQFRQRITDTTILAFAVFVVTGIVFVIMTTGFTAMVA
NQNSARLQIYSAWPDGGVIPPEYGCLAPDGVPISIPLHWQDVPPEATNLV
ILFSHPGAFHIAEVDPVHWFVMGIPIGPGHSDHIPPNASINPSLLPHGAI
QRPNAYSHQGYYWPPCTNATGDFTILAYAVEAPAVIEDLHDAREIMMRFD
GVPFARLSGTYTHAPLHQNGHVPYSWHA*

mRNA from alignment at tig00004380_pilon:450253..451239+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil596.t1 ID=Gchil596.t1|Name=Gchil596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00004380_pilon:450253..451239+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCAAAGACCGCGACGAGGCCCCACCGCCACATCCGCCCGCGTGCTC
ACCGTTGCTCTTTCCGCCGGAGCGCATCCCGCTGGCGCCCGCGCACATCG
ACCACAATGCCTCCACGCCCTCCGCCTACGAGTCTCCCACCCCGCCCTCC
TCCCCGTCAATCGACTTCCCCTACGGCGCCGTCGCACGCGCCATGTCACC
CAGTCTTGACACTGATGCGCCCCGCGAGCGAAGAACCTTGAGGGTGTCCG
ATCCGTTACAGACCGTCCATTTGATCACCGACTCGTCGCAAAGCGATCAT
TCTCACCAGCCCTATCTTGACCGCTCTCAAGTCGAACTTGCCCAGTTTCG
CCAACGTATTACCGATACCACCATTCTTGCTTTTGCTGTTTTTGTCGTCA
CGGGTATAGTGTTTGTTATCATGACTACGGGTTTCACTGCTATGGTTGCC
AACCAGAACTCAGCTCGACTGCAGATTTACTCCGCGTGGCCGGATGGCGG
TGTCATTCCGCCCGAGTATGGCTGCCTTGCTCCAGATGGTGTCCCCATTT
CAATCCCTCTGCACTGGCAAGATGTCCCCCCAGAAGCTACCAATCTCGTT
ATTCTCTTTTCTCATCCTGGCGCCTTTCACATCGCTGAAGTCGACCCGGT
ACATTGGTTCGTCATGGGCATCCCAATCGGACCAGGCCACAGCGATCACA
TTCCGCCCAATGCATCTATCAATCCATCATTGCTACCGCATGGCGCCATT
CAACGTCCGAATGCATACTCGCATCAAGGCTACTATTGGCCGCCGTGCAC
GAATGCAACCGGCGATTTTACTATACTTGCGTACGCTGTTGAAGCACCTG
CTGTCATTGAGGATCTGCACGATGCTAGGGAAATTATGATGCGCTTTGAT
GGCGTGCCGTTCGCTAGGCTTAGCGGCACATATACTCATGCTCCTCTACA
CCAGAATGGTCATGTCCCGTACTCGTGGCATGCCTGA

Coding sequence (CDS) from alignment at tig00004380_pilon:450253..451239+

>Gchil596.t1 ID=Gchil596.t1|Name=Gchil596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=987bp|location=Sequence derived from alignment at tig00004380_pilon:450253..451239+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCAAAGACCGCGACGAGGCCCCACCGCCACATCCGCCCGCGTGCTC
ACCGTTGCTCTTTCCGCCGGAGCGCATCCCGCTGGCGCCCGCGCACATCG
ACCACAATGCCTCCACGCCCTCCGCCTACGAGTCTCCCACCCCGCCCTCC
TCCCCGTCAATCGACTTCCCCTACGGCGCCGTCGCACGCGCCATGTCACC
CAGTCTTGACACTGATGCGCCCCGCGAGCGAAGAACCTTGAGGGTGTCCG
ATCCGTTACAGACCGTCCATTTGATCACCGACTCGTCGCAAAGCGATCAT
TCTCACCAGCCCTATCTTGACCGCTCTCAAGTCGAACTTGCCCAGTTTCG
CCAACGTATTACCGATACCACCATTCTTGCTTTTGCTGTTTTTGTCGTCA
CGGGTATAGTGTTTGTTATCATGACTACGGGTTTCACTGCTATGGTTGCC
AACCAGAACTCAGCTCGACTGCAGATTTACTCCGCGTGGCCGGATGGCGG
TGTCATTCCGCCCGAGTATGGCTGCCTTGCTCCAGATGGTGTCCCCATTT
CAATCCCTCTGCACTGGCAAGATGTCCCCCCAGAAGCTACCAATCTCGTT
ATTCTCTTTTCTCATCCTGGCGCCTTTCACATCGCTGAAGTCGACCCGGT
ACATTGGTTCGTCATGGGCATCCCAATCGGACCAGGCCACAGCGATCACA
TTCCGCCCAATGCATCTATCAATCCATCATTGCTACCGCATGGCGCCATT
CAACGTCCGAATGCATACTCGCATCAAGGCTACTATTGGCCGCCGTGCAC
GAATGCAACCGGCGATTTTACTATACTTGCGTACGCTGTTGAAGCACCTG
CTGTCATTGAGGATCTGCACGATGCTAGGGAAATTATGATGCGCTTTGAT
GGCGTGCCGTTCGCTAGGCTTAGCGGCACATATACTCATGCTCCTCTACA
CCAGAATGGTCATGTCCCGTACTCGTGGCATGCCTGA