Gchil5908.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5908.t1
Unique Name	Gchil5908.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	660

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025225_pilon	contig	tig00025225_pilon:130355..132334 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45351.EDO41269
Preferred name	POLA2
PFAMs	DNA_pol_E_B,Pol_alpha_B_N
Max annot lvl	33208\|Metazoa
KEGG rclass	RC02795
KEGG ko	ko:K02321
KEGG Reaction	R00375,R00376,R00377,R00378
KEGG Pathway	ko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG Module	M00261
GOs	GO:0000060,GO:0000082,GO:0000228,GO:0000278,GO:0000428,GO:0000723,GO:0003674,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005657,GO:0005658,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006606,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0017038,GO:0018130,GO:0019438,GO:0019725,GO:0022402,GO:0030880,GO:0030894,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033036,GO:0033260,GO:0033365,GO:0034061,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042592,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045184,GO:0046483,GO:0046907,GO:0046982,GO:0046983,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051276,GO:0051641,GO:0051649,GO:0055029,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071897,GO:0072594,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903047,GO:1990234
Evalue	5.03e-41
EggNOG OGs	COG5214@1\|root,KOG1625@2759\|Eukaryota,38GQH@33154\|Opisthokonta,3B9MD@33208\|Metazoa
Description	May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha primase complex to the cellular replication machinery
COG category	L
BRITE	ko00000,ko00001,ko00002,ko03032

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5908	Gchil5908	Gracilaria chilensis NLEC103_M9 male	gene	tig00025225_pilon 130355..132334 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5908.t1.stop1	Gchil5908.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025225_pilon 130355..130357 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5908.t1.CDS1	Gchil5908.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025225_pilon 130355..132334 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5908.t1.exon1	Gchil5908.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025225_pilon 130355..132334 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5908.t1.start1	Gchil5908.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025225_pilon 132332..132334 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5908.t1	Gchil5908.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025225_pilon 130355..132334 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025225_pilon:130355..132334-
coding sequence from alignment at tig00025225_pilon:130355..132334-

mRNA sequence

>Gchil5908.t1 ID=Gchil5908.t1|Name=Gchil5908.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=660bp
METQPQPKSFKLGGAALPRSLSAIAHSICEQNAITADQLDCKWEAWALAN
SHSTGLPSEEEFRAFAAHLRQKALKASVFKSTPPPRKSSLLHSPGPTPTR
VNNIDEFFNYLSDEAKKEVRVKAEPEPLIVRNLNQTLDDDATNAKRSRLF
KAEPIPAQVKPHDVNHLPGDDKQDEQYANRTGSGRVEASLDNSEATPHNP
LSRDLLGPIHVQPFTPHQPHTRYMHNPVLQRMNDVRSHTQTIVEQILSRL
KLLRDDEMPRLSTICRQGGSPATILIAGRIRTELEEIDASCNATINLESV
ILEGEDGHFIKLNLHRLVNNKHPFFINPGMVVVVEGVNTNGKLFDVHAIY
DNAMQTSEQRHVFQEKREVKMEEEDEVEQHSQPYANLIVAAGPFTRQSNL
KYEPLSDLLQIIQRNKPHVVILTGPFVEESHQHISPQTPMPYDEVFVSRI
IVPLQATIATMAASDELVPQFVLIPALEDVHHDFVCPQPAFRWPFAQVEH
NIHLCPNPCVLEVSAKDGQYVSFVGATSLPTLQDISADSLCRNKPDRLGS
IVSHMLRQRSFYPSFPPSNAVPLDTGFLDRLEIMDVDTGDTVDMIIVPSK
LKAFAKSVDGGAIAVNPGLASRESDGGTYAEIALPLHNSRQRRSIQANED
TIEVSVIRL*

spliced messenger RNA

>Gchil5908.t1 ID=Gchil5908.t1|Name=Gchil5908.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at tig00025225_pilon:130355..132334- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACTCAACCCCAACCCAAGTCCTTCAAGCTCGGCGGCGCCGCACT
TCCACGCTCGCTCTCCGCCATTGCCCACTCCATATGCGAGCAGAACGCCA
TCACCGCCGACCAGCTCGACTGCAAGTGGGAGGCATGGGCCCTCGCCAAC
TCCCACTCCACCGGCCTGCCGTCCGAGGAGGAGTTTCGAGCATTTGCCGC
CCATCTACGCCAGAAGGCCCTGAAAGCTTCCGTCTTCAAGTCCACCCCGC
CCCCTCGCAAAAGCTCCCTGCTGCACTCGCCTGGACCCACCCCAACGCGA
GTCAACAACATCGACGAGTTTTTCAACTACTTGAGTGACGAGGCCAAGAA
AGAAGTCCGAGTGAAGGCCGAACCGGAGCCACTCATTGTCCGTAATTTGA
ACCAAACGCTTGACGATGATGCCACAAACGCGAAGCGCAGCCGCTTGTTC
AAGGCCGAGCCCATTCCTGCACAAGTCAAACCTCACGACGTCAACCATCT
CCCAGGAGACGACAAACAAGACGAGCAATACGCTAATCGCACCGGTTCCG
GTCGCGTCGAAGCCTCGCTCGACAACTCAGAGGCAACCCCCCACAACCCA
TTGTCCCGCGATCTCCTCGGTCCCATTCATGTGCAGCCGTTCACCCCACA
CCAACCCCACACCAGGTACATGCACAACCCCGTGTTACAACGCATGAATG
ACGTACGCAGCCACACACAAACAATCGTCGAACAAATTCTTTCGCGTTTG
AAACTTTTGCGGGACGATGAAATGCCTCGTTTGTCCACTATCTGTCGACA
GGGAGGAAGTCCCGCCACCATCCTGATTGCAGGCCGTATTCGAACTGAAT
TGGAGGAGATCGATGCCTCGTGCAACGCGACAATAAACCTGGAGTCTGTC
ATTCTCGAGGGCGAAGACGGACATTTTATTAAGCTCAATCTTCACAGGCT
AGTGAACAATAAGCATCCATTCTTCATAAATCCCGGCATGGTTGTCGTCG
TGGAGGGCGTGAATACAAATGGGAAGCTGTTTGACGTCCATGCCATTTAC
GATAACGCAATGCAGACTTCTGAGCAACGTCATGTCTTCCAAGAGAAACG
TGAGGTAAAGATGGAAGAGGAAGATGAGGTTGAACAACACTCTCAACCAT
ACGCTAATCTTATTGTGGCGGCAGGCCCTTTTACACGTCAATCGAACCTC
AAGTACGAACCGCTCTCAGATCTACTTCAAATAATTCAACGGAACAAACC
GCATGTTGTCATTCTCACTGGCCCATTCGTTGAGGAATCACATCAACACA
TCTCTCCCCAGACCCCCATGCCGTATGATGAAGTGTTCGTTAGCCGAATT
ATCGTTCCGTTGCAAGCGACTATAGCAACTATGGCGGCGAGTGACGAACT
GGTTCCACAGTTCGTTCTCATTCCCGCCTTGGAAGACGTTCACCATGACT
TTGTATGTCCCCAACCAGCGTTTCGCTGGCCTTTTGCCCAAGTAGAACAC
AATATTCACCTGTGTCCAAACCCATGTGTGTTGGAGGTGAGCGCAAAGGA
CGGGCAGTACGTTTCATTCGTTGGCGCAACGTCTCTGCCGACTTTGCAAG
ATATATCCGCCGATAGTTTGTGCAGGAACAAACCAGACCGACTGGGTTCT
ATCGTATCCCATATGCTGAGACAACGTTCTTTCTATCCAAGTTTCCCTCC
AAGTAACGCTGTGCCACTCGATACGGGGTTTCTTGATCGACTGGAAATCA
TGGATGTAGATACAGGTGACACCGTTGATATGATCATTGTACCGTCGAAA
CTGAAAGCATTTGCGAAGAGTGTTGATGGGGGTGCTATAGCCGTGAATCC
TGGTCTCGCAAGCCGAGAATCAGATGGGGGCACATATGCAGAAATAGCCC
TTCCGCTGCACAATTCGCGACAGCGAAGGTCTATCCAAGCGAATGAGGAT
ACGATCGAGGTTAGCGTTATCCGCCTGTAG

protein sequence of Gchil5908.t1

>Gchil5908.t1 ID=Gchil5908.t1|Name=Gchil5908.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=660bp
METQPQPKSFKLGGAALPRSLSAIAHSICEQNAITADQLDCKWEAWALAN
SHSTGLPSEEEFRAFAAHLRQKALKASVFKSTPPPRKSSLLHSPGPTPTR
VNNIDEFFNYLSDEAKKEVRVKAEPEPLIVRNLNQTLDDDATNAKRSRLF
KAEPIPAQVKPHDVNHLPGDDKQDEQYANRTGSGRVEASLDNSEATPHNP
LSRDLLGPIHVQPFTPHQPHTRYMHNPVLQRMNDVRSHTQTIVEQILSRL
KLLRDDEMPRLSTICRQGGSPATILIAGRIRTELEEIDASCNATINLESV
ILEGEDGHFIKLNLHRLVNNKHPFFINPGMVVVVEGVNTNGKLFDVHAIY
DNAMQTSEQRHVFQEKREVKMEEEDEVEQHSQPYANLIVAAGPFTRQSNL
KYEPLSDLLQIIQRNKPHVVILTGPFVEESHQHISPQTPMPYDEVFVSRI
IVPLQATIATMAASDELVPQFVLIPALEDVHHDFVCPQPAFRWPFAQVEH
NIHLCPNPCVLEVSAKDGQYVSFVGATSLPTLQDISADSLCRNKPDRLGS
IVSHMLRQRSFYPSFPPSNAVPLDTGFLDRLEIMDVDTGDTVDMIIVPSK
LKAFAKSVDGGAIAVNPGLASRESDGGTYAEIALPLHNSRQRRSIQANED
TIEVSVIRL*

mRNA from alignment at tig00025225_pilon:130355..132334-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5908.t1 ID=Gchil5908.t1|Name=Gchil5908.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at tig00025225_pilon:130355..132334- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGACTCAACCCCAACCCAAGTCCTTCAAGCTCGGCGGCGCCGCACT
TCCACGCTCGCTCTCCGCCATTGCCCACTCCATATGCGAGCAGAACGCCA
TCACCGCCGACCAGCTCGACTGCAAGTGGGAGGCATGGGCCCTCGCCAAC
TCCCACTCCACCGGCCTGCCGTCCGAGGAGGAGTTTCGAGCATTTGCCGC
CCATCTACGCCAGAAGGCCCTGAAAGCTTCCGTCTTCAAGTCCACCCCGC
CCCCTCGCAAAAGCTCCCTGCTGCACTCGCCTGGACCCACCCCAACGCGA
GTCAACAACATCGACGAGTTTTTCAACTACTTGAGTGACGAGGCCAAGAA
AGAAGTCCGAGTGAAGGCCGAACCGGAGCCACTCATTGTCCGTAATTTGA
ACCAAACGCTTGACGATGATGCCACAAACGCGAAGCGCAGCCGCTTGTTC
AAGGCCGAGCCCATTCCTGCACAAGTCAAACCTCACGACGTCAACCATCT
CCCAGGAGACGACAAACAAGACGAGCAATACGCTAATCGCACCGGTTCCG
GTCGCGTCGAAGCCTCGCTCGACAACTCAGAGGCAACCCCCCACAACCCA
TTGTCCCGCGATCTCCTCGGTCCCATTCATGTGCAGCCGTTCACCCCACA
CCAACCCCACACCAGGTACATGCACAACCCCGTGTTACAACGCATGAATG
ACGTACGCAGCCACACACAAACAATCGTCGAACAAATTCTTTCGCGTTTG
AAACTTTTGCGGGACGATGAAATGCCTCGTTTGTCCACTATCTGTCGACA
GGGAGGAAGTCCCGCCACCATCCTGATTGCAGGCCGTATTCGAACTGAAT
TGGAGGAGATCGATGCCTCGTGCAACGCGACAATAAACCTGGAGTCTGTC
ATTCTCGAGGGCGAAGACGGACATTTTATTAAGCTCAATCTTCACAGGCT
AGTGAACAATAAGCATCCATTCTTCATAAATCCCGGCATGGTTGTCGTCG
TGGAGGGCGTGAATACAAATGGGAAGCTGTTTGACGTCCATGCCATTTAC
GATAACGCAATGCAGACTTCTGAGCAACGTCATGTCTTCCAAGAGAAACG
TGAGGTAAAGATGGAAGAGGAAGATGAGGTTGAACAACACTCTCAACCAT
ACGCTAATCTTATTGTGGCGGCAGGCCCTTTTACACGTCAATCGAACCTC
AAGTACGAACCGCTCTCAGATCTACTTCAAATAATTCAACGGAACAAACC
GCATGTTGTCATTCTCACTGGCCCATTCGTTGAGGAATCACATCAACACA
TCTCTCCCCAGACCCCCATGCCGTATGATGAAGTGTTCGTTAGCCGAATT
ATCGTTCCGTTGCAAGCGACTATAGCAACTATGGCGGCGAGTGACGAACT
GGTTCCACAGTTCGTTCTCATTCCCGCCTTGGAAGACGTTCACCATGACT
TTGTATGTCCCCAACCAGCGTTTCGCTGGCCTTTTGCCCAAGTAGAACAC
AATATTCACCTGTGTCCAAACCCATGTGTGTTGGAGGTGAGCGCAAAGGA
CGGGCAGTACGTTTCATTCGTTGGCGCAACGTCTCTGCCGACTTTGCAAG
ATATATCCGCCGATAGTTTGTGCAGGAACAAACCAGACCGACTGGGTTCT
ATCGTATCCCATATGCTGAGACAACGTTCTTTCTATCCAAGTTTCCCTCC
AAGTAACGCTGTGCCACTCGATACGGGGTTTCTTGATCGACTGGAAATCA
TGGATGTAGATACAGGTGACACCGTTGATATGATCATTGTACCGTCGAAA
CTGAAAGCATTTGCGAAGAGTGTTGATGGGGGTGCTATAGCCGTGAATCC
TGGTCTCGCAAGCCGAGAATCAGATGGGGGCACATATGCAGAAATAGCCC
TTCCGCTGCACAATTCGCGACAGCGAAGGTCTATCCAAGCGAATGAGGAT
ACGATCGAGGTTAGCGTTATCCGCCTGTAG

Coding sequence (CDS) from alignment at tig00025225_pilon:130355..132334-

>Gchil5908.t1 ID=Gchil5908.t1|Name=Gchil5908.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1980bp|location=Sequence derived from alignment at tig00025225_pilon:130355..132334- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGACTCAACCCCAACCCAAGTCCTTCAAGCTCGGCGGCGCCGCACT
TCCACGCTCGCTCTCCGCCATTGCCCACTCCATATGCGAGCAGAACGCCA
TCACCGCCGACCAGCTCGACTGCAAGTGGGAGGCATGGGCCCTCGCCAAC
TCCCACTCCACCGGCCTGCCGTCCGAGGAGGAGTTTCGAGCATTTGCCGC
CCATCTACGCCAGAAGGCCCTGAAAGCTTCCGTCTTCAAGTCCACCCCGC
CCCCTCGCAAAAGCTCCCTGCTGCACTCGCCTGGACCCACCCCAACGCGA
GTCAACAACATCGACGAGTTTTTCAACTACTTGAGTGACGAGGCCAAGAA
AGAAGTCCGAGTGAAGGCCGAACCGGAGCCACTCATTGTCCGTAATTTGA
ACCAAACGCTTGACGATGATGCCACAAACGCGAAGCGCAGCCGCTTGTTC
AAGGCCGAGCCCATTCCTGCACAAGTCAAACCTCACGACGTCAACCATCT
CCCAGGAGACGACAAACAAGACGAGCAATACGCTAATCGCACCGGTTCCG
GTCGCGTCGAAGCCTCGCTCGACAACTCAGAGGCAACCCCCCACAACCCA
TTGTCCCGCGATCTCCTCGGTCCCATTCATGTGCAGCCGTTCACCCCACA
CCAACCCCACACCAGGTACATGCACAACCCCGTGTTACAACGCATGAATG
ACGTACGCAGCCACACACAAACAATCGTCGAACAAATTCTTTCGCGTTTG
AAACTTTTGCGGGACGATGAAATGCCTCGTTTGTCCACTATCTGTCGACA
GGGAGGAAGTCCCGCCACCATCCTGATTGCAGGCCGTATTCGAACTGAAT
TGGAGGAGATCGATGCCTCGTGCAACGCGACAATAAACCTGGAGTCTGTC
ATTCTCGAGGGCGAAGACGGACATTTTATTAAGCTCAATCTTCACAGGCT
AGTGAACAATAAGCATCCATTCTTCATAAATCCCGGCATGGTTGTCGTCG
TGGAGGGCGTGAATACAAATGGGAAGCTGTTTGACGTCCATGCCATTTAC
GATAACGCAATGCAGACTTCTGAGCAACGTCATGTCTTCCAAGAGAAACG
TGAGGTAAAGATGGAAGAGGAAGATGAGGTTGAACAACACTCTCAACCAT
ACGCTAATCTTATTGTGGCGGCAGGCCCTTTTACACGTCAATCGAACCTC
AAGTACGAACCGCTCTCAGATCTACTTCAAATAATTCAACGGAACAAACC
GCATGTTGTCATTCTCACTGGCCCATTCGTTGAGGAATCACATCAACACA
TCTCTCCCCAGACCCCCATGCCGTATGATGAAGTGTTCGTTAGCCGAATT
ATCGTTCCGTTGCAAGCGACTATAGCAACTATGGCGGCGAGTGACGAACT
GGTTCCACAGTTCGTTCTCATTCCCGCCTTGGAAGACGTTCACCATGACT
TTGTATGTCCCCAACCAGCGTTTCGCTGGCCTTTTGCCCAAGTAGAACAC
AATATTCACCTGTGTCCAAACCCATGTGTGTTGGAGGTGAGCGCAAAGGA
CGGGCAGTACGTTTCATTCGTTGGCGCAACGTCTCTGCCGACTTTGCAAG
ATATATCCGCCGATAGTTTGTGCAGGAACAAACCAGACCGACTGGGTTCT
ATCGTATCCCATATGCTGAGACAACGTTCTTTCTATCCAAGTTTCCCTCC
AAGTAACGCTGTGCCACTCGATACGGGGTTTCTTGATCGACTGGAAATCA
TGGATGTAGATACAGGTGACACCGTTGATATGATCATTGTACCGTCGAAA
CTGAAAGCATTTGCGAAGAGTGTTGATGGGGGTGCTATAGCCGTGAATCC
TGGTCTCGCAAGCCGAGAATCAGATGGGGGCACATATGCAGAAATAGCCC
TTCCGCTGCACAATTCGCGACAGCGAAGGTCTATCCAAGCGAATGAGGAT
ACGATCGAGGTTAGCGTTATCCGCCTGTAG