Gchil581.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil581.t1
Unique NameGchil581.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:383736..385217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil581Gchil581Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 383736..385217 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil581.t1.start1Gchil581.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 383736..383738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil581.t1.CDS1Gchil581.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 383736..385217 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil581.t1.exon1Gchil581.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 383736..385217 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil581.t1.stop1Gchil581.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 385215..385217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil581.t1Gchil581.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 383736..385217 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil581.t1 ID=Gchil581.t1|Name=Gchil581.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=494bp
MSAAPRFSAPSTESLPATFFDDARCADTGADRRTHEQRCLLARCLLLASQ
HRWVAEWLFSDPHTRFHRNLHVALSAFDHAHPLSIMHSFQGQNSTRNLAS
EMLLIPMANMNAITVGYITLRGGSNWHGHVGRYAFHSQSAEVLMVVNNYT
PDATAVMAVIPQPDTVKQFLITCPVLEYSFNNLPNQAFTVHVAERDQTSK
NSPQQIAHQLQAFPASIDRLLELCSTNDSMLPSSSYHSDLLSLLDLDPPS
QLPWIIDSASSLSDNIGIPANPGTADTSSGAFNLTAISDSIRHIENTLHG
TFLGTSEIHYPLALAFESPVKQTIVSIAAADSLEATLLRRYAVKVYFDAT
TPVISDEKYLALPSFPYSVTAEPSPSQPQNSTGNDKQYFRRIAPSPMTVA
SDNPTVAKADADLARERTLEARRRRNRLSAARSNDKRKEKWKRKVQTLQE
LRERMKNLLSKQQQLVEENGMLRKLVGYDVAGGRGCSQAQNAM*
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spliced messenger RNA

>Gchil581.t1 ID=Gchil581.t1|Name=Gchil581.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00004380_pilon:383736..385217+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCTGCGCCCCGCTTTTCTGCCCCGTCCACCGAGTCTCTGCCGGC
TACCTTCTTTGACGACGCCAGATGTGCCGACACCGGCGCCGACCGCCGCA
CCCACGAGCAGCGCTGCTTGCTAGCTCGCTGTTTGCTCCTGGCGTCGCAG
CATCGTTGGGTGGCCGAGTGGCTGTTCTCAGACCCCCATACCAGGTTTCA
TCGCAATCTCCATGTCGCCCTCTCCGCCTTTGATCACGCCCACCCGCTGT
CTATCATGCACTCGTTCCAAGGACAGAACTCTACTCGAAATCTCGCTTCT
GAGATGCTTCTCATACCCATGGCCAACATGAACGCCATCACTGTCGGATA
CATCACTCTCAGGGGGGGGTCCAATTGGCATGGGCACGTCGGTCGATATG
CCTTTCATTCACAGTCTGCTGAAGTCCTCATGGTGGTCAACAACTACACT
CCAGACGCCACCGCCGTCATGGCCGTTATACCCCAGCCTGATACCGTCAA
ACAGTTCCTAATCACTTGCCCGGTCTTAGAATACTCTTTCAACAACCTTC
CTAATCAGGCGTTCACCGTTCACGTCGCCGAACGGGATCAAACATCCAAA
AATTCACCGCAACAAATAGCTCACCAGCTACAAGCTTTTCCTGCTTCAAT
TGACCGTCTCCTCGAACTCTGCTCAACGAACGATTCAATGCTCCCGTCTT
CAAGTTATCACTCTGATTTGCTTTCGCTTCTTGACTTAGACCCGCCCTCG
CAACTACCTTGGATCATCGATAGCGCATCTTCCCTGTCCGACAACATCGG
CATACCAGCCAATCCTGGGACAGCAGATACCTCTTCCGGCGCCTTCAATC
TCACTGCCATATCAGATTCAATTCGTCACATCGAGAATACTCTACATGGA
ACATTTCTTGGCACTTCAGAAATCCACTACCCGCTGGCCCTCGCTTTTGA
GTCCCCTGTCAAACAAACCATTGTTAGTATTGCCGCGGCCGACTCTCTAG
AGGCTACTCTCTTGCGAAGGTACGCAGTCAAAGTTTATTTCGACGCCACA
ACTCCCGTCATCAGCGACGAGAAGTATTTGGCGCTTCCTTCATTTCCTTA
CTCTGTTACTGCAGAGCCGTCGCCATCGCAACCGCAAAATTCTACGGGCA
ATGACAAACAGTATTTTCGGCGGATTGCACCTAGTCCCATGACTGTAGCA
AGCGATAATCCAACAGTCGCAAAAGCGGACGCCGATTTAGCGCGGGAGAG
AACACTGGAGGCGCGTCGAAGACGTAATCGTCTCTCCGCAGCACGAAGCA
ACGATAAGCGGAAAGAAAAATGGAAACGGAAAGTTCAAACGCTTCAAGAG
CTTCGAGAGCGTATGAAGAATCTTCTATCAAAGCAACAGCAGTTGGTGGA
AGAGAACGGCATGTTGCGCAAACTGGTTGGATATGACGTTGCAGGGGGAA
GGGGGTGTTCCCAGGCTCAAAACGCAATGTAA
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protein sequence of Gchil581.t1

>Gchil581.t1 ID=Gchil581.t1|Name=Gchil581.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=494bp
MSAAPRFSAPSTESLPATFFDDARCADTGADRRTHEQRCLLARCLLLASQ
HRWVAEWLFSDPHTRFHRNLHVALSAFDHAHPLSIMHSFQGQNSTRNLAS
EMLLIPMANMNAITVGYITLRGGSNWHGHVGRYAFHSQSAEVLMVVNNYT
PDATAVMAVIPQPDTVKQFLITCPVLEYSFNNLPNQAFTVHVAERDQTSK
NSPQQIAHQLQAFPASIDRLLELCSTNDSMLPSSSYHSDLLSLLDLDPPS
QLPWIIDSASSLSDNIGIPANPGTADTSSGAFNLTAISDSIRHIENTLHG
TFLGTSEIHYPLALAFESPVKQTIVSIAAADSLEATLLRRYAVKVYFDAT
TPVISDEKYLALPSFPYSVTAEPSPSQPQNSTGNDKQYFRRIAPSPMTVA
SDNPTVAKADADLARERTLEARRRRNRLSAARSNDKRKEKWKRKVQTLQE
LRERMKNLLSKQQQLVEENGMLRKLVGYDVAGGRGCSQAQNAM*
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mRNA from alignment at tig00004380_pilon:383736..385217+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil581.t1 ID=Gchil581.t1|Name=Gchil581.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00004380_pilon:383736..385217+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGCTGCGCCCCGCTTTTCTGCCCCGTCCACCGAGTCTCTGCCGGC
TACCTTCTTTGACGACGCCAGATGTGCCGACACCGGCGCCGACCGCCGCA
CCCACGAGCAGCGCTGCTTGCTAGCTCGCTGTTTGCTCCTGGCGTCGCAG
CATCGTTGGGTGGCCGAGTGGCTGTTCTCAGACCCCCATACCAGGTTTCA
TCGCAATCTCCATGTCGCCCTCTCCGCCTTTGATCACGCCCACCCGCTGT
CTATCATGCACTCGTTCCAAGGACAGAACTCTACTCGAAATCTCGCTTCT
GAGATGCTTCTCATACCCATGGCCAACATGAACGCCATCACTGTCGGATA
CATCACTCTCAGGGGGGGGTCCAATTGGCATGGGCACGTCGGTCGATATG
CCTTTCATTCACAGTCTGCTGAAGTCCTCATGGTGGTCAACAACTACACT
CCAGACGCCACCGCCGTCATGGCCGTTATACCCCAGCCTGATACCGTCAA
ACAGTTCCTAATCACTTGCCCGGTCTTAGAATACTCTTTCAACAACCTTC
CTAATCAGGCGTTCACCGTTCACGTCGCCGAACGGGATCAAACATCCAAA
AATTCACCGCAACAAATAGCTCACCAGCTACAAGCTTTTCCTGCTTCAAT
TGACCGTCTCCTCGAACTCTGCTCAACGAACGATTCAATGCTCCCGTCTT
CAAGTTATCACTCTGATTTGCTTTCGCTTCTTGACTTAGACCCGCCCTCG
CAACTACCTTGGATCATCGATAGCGCATCTTCCCTGTCCGACAACATCGG
CATACCAGCCAATCCTGGGACAGCAGATACCTCTTCCGGCGCCTTCAATC
TCACTGCCATATCAGATTCAATTCGTCACATCGAGAATACTCTACATGGA
ACATTTCTTGGCACTTCAGAAATCCACTACCCGCTGGCCCTCGCTTTTGA
GTCCCCTGTCAAACAAACCATTGTTAGTATTGCCGCGGCCGACTCTCTAG
AGGCTACTCTCTTGCGAAGGTACGCAGTCAAAGTTTATTTCGACGCCACA
ACTCCCGTCATCAGCGACGAGAAGTATTTGGCGCTTCCTTCATTTCCTTA
CTCTGTTACTGCAGAGCCGTCGCCATCGCAACCGCAAAATTCTACGGGCA
ATGACAAACAGTATTTTCGGCGGATTGCACCTAGTCCCATGACTGTAGCA
AGCGATAATCCAACAGTCGCAAAAGCGGACGCCGATTTAGCGCGGGAGAG
AACACTGGAGGCGCGTCGAAGACGTAATCGTCTCTCCGCAGCACGAAGCA
ACGATAAGCGGAAAGAAAAATGGAAACGGAAAGTTCAAACGCTTCAAGAG
CTTCGAGAGCGTATGAAGAATCTTCTATCAAAGCAACAGCAGTTGGTGGA
AGAGAACGGCATGTTGCGCAAACTGGTTGGATATGACGTTGCAGGGGGAA
GGGGGTGTTCCCAGGCTCAAAACGCAATGTAA
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Coding sequence (CDS) from alignment at tig00004380_pilon:383736..385217+

>Gchil581.t1 ID=Gchil581.t1|Name=Gchil581.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00004380_pilon:383736..385217+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGCTGCGCCCCGCTTTTCTGCCCCGTCCACCGAGTCTCTGCCGGC
TACCTTCTTTGACGACGCCAGATGTGCCGACACCGGCGCCGACCGCCGCA
CCCACGAGCAGCGCTGCTTGCTAGCTCGCTGTTTGCTCCTGGCGTCGCAG
CATCGTTGGGTGGCCGAGTGGCTGTTCTCAGACCCCCATACCAGGTTTCA
TCGCAATCTCCATGTCGCCCTCTCCGCCTTTGATCACGCCCACCCGCTGT
CTATCATGCACTCGTTCCAAGGACAGAACTCTACTCGAAATCTCGCTTCT
GAGATGCTTCTCATACCCATGGCCAACATGAACGCCATCACTGTCGGATA
CATCACTCTCAGGGGGGGGTCCAATTGGCATGGGCACGTCGGTCGATATG
CCTTTCATTCACAGTCTGCTGAAGTCCTCATGGTGGTCAACAACTACACT
CCAGACGCCACCGCCGTCATGGCCGTTATACCCCAGCCTGATACCGTCAA
ACAGTTCCTAATCACTTGCCCGGTCTTAGAATACTCTTTCAACAACCTTC
CTAATCAGGCGTTCACCGTTCACGTCGCCGAACGGGATCAAACATCCAAA
AATTCACCGCAACAAATAGCTCACCAGCTACAAGCTTTTCCTGCTTCAAT
TGACCGTCTCCTCGAACTCTGCTCAACGAACGATTCAATGCTCCCGTCTT
CAAGTTATCACTCTGATTTGCTTTCGCTTCTTGACTTAGACCCGCCCTCG
CAACTACCTTGGATCATCGATAGCGCATCTTCCCTGTCCGACAACATCGG
CATACCAGCCAATCCTGGGACAGCAGATACCTCTTCCGGCGCCTTCAATC
TCACTGCCATATCAGATTCAATTCGTCACATCGAGAATACTCTACATGGA
ACATTTCTTGGCACTTCAGAAATCCACTACCCGCTGGCCCTCGCTTTTGA
GTCCCCTGTCAAACAAACCATTGTTAGTATTGCCGCGGCCGACTCTCTAG
AGGCTACTCTCTTGCGAAGGTACGCAGTCAAAGTTTATTTCGACGCCACA
ACTCCCGTCATCAGCGACGAGAAGTATTTGGCGCTTCCTTCATTTCCTTA
CTCTGTTACTGCAGAGCCGTCGCCATCGCAACCGCAAAATTCTACGGGCA
ATGACAAACAGTATTTTCGGCGGATTGCACCTAGTCCCATGACTGTAGCA
AGCGATAATCCAACAGTCGCAAAAGCGGACGCCGATTTAGCGCGGGAGAG
AACACTGGAGGCGCGTCGAAGACGTAATCGTCTCTCCGCAGCACGAAGCA
ACGATAAGCGGAAAGAAAAATGGAAACGGAAAGTTCAAACGCTTCAAGAG
CTTCGAGAGCGTATGAAGAATCTTCTATCAAAGCAACAGCAGTTGGTGGA
AGAGAACGGCATGTTGCGCAAACTGGTTGGATATGACGTTGCAGGGGGAA
GGGGGTGTTCCCAGGCTCAAAACGCAATGTAA
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