Gchil5727.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5727.t1
Unique NameGchil5727.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1127216..1128901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5727Gchil5727Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 1127216..1128901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5727.t1Gchil5727.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 1127216..1128901 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5727.t1.stop1Gchil5727.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 1127216..1127218 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5727.t1.CDS1Gchil5727.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1127216..1127914 -
Gchil5727.t1.CDS2Gchil5727.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1128653..1128901 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5727.t1.exon1Gchil5727.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1127216..1127914 -
Gchil5727.t1.exon2Gchil5727.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1128653..1128901 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5727.t1.intron1Gchil5727.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000015_pilon 1127915..1128652 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5727.t1.start1Gchil5727.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 1128899..1128901 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5727.t1 ID=Gchil5727.t1|Name=Gchil5727.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=316bp
MAAVALSNLPWWTSDADVEALVARAHAAARRAVVDVRFAVDAACGKSLGR
VVVALSAPELAEPLRAALAEQAPPSAAPSTPVAPDPDRSRSRRGKGRETL
IINKYGERVLVYRPDHDTDDSRRRPAARRPPRDSSDEFETAAKLNIPEEV
KERLRERMHNERHTQHNRSPERSLSPRRASPERDRQRDRDRTRDRNRDRR
RERTRDRSPFNSSSRRRSRSHSPDWSDDHRSSKRRRHAHYDSVQWERASD
SPKHDEPPVKSRAEEGDPPPRRPRRRGGRSRRRARANANQQASAADKADG
PSDRRNSRRQRSTRR*
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spliced messenger RNA

>Gchil5727.t1 ID=Gchil5727.t1|Name=Gchil5727.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000015_pilon:1127216..1128901- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGTGGCGCTGAGCAATCTGCCCTGGTGGACGTCCGATGCCGA
CGTGGAGGCGCTGGTGGCGCGCGCGCACGCCGCCGCGCGTCGCGCCGTCG
TCGACGTGCGCTTTGCCGTCGACGCTGCGTGCGGAAAGAGCCTGGGACGC
GTCGTCGTTGCGCTGTCCGCGCCCGAGTTGGCCGAGCCGTTGCGCGCCGC
GCTGGCGGAACAGGCGCCGCCGTCGGCCGCACCGTCTACGCCCGTCGCCC
CCGATCCCGACCGCTCGCGTTCGCGCCGCGGAAAGGGTCGCGAAACGCTC
ATCATCAACAAGTACGGCGAGCGCGTCCTCGTTTACCGCCCGGACCACGA
TACCGATGACTCGCGCCGTCGCCCCGCCGCGCGAAGACCCCCCCGCGACT
CCTCCGACGAATTTGAGACCGCTGCAAAGCTCAACATTCCCGAGGAGGTC
AAGGAGCGTCTGCGCGAACGTATGCACAATGAGAGGCACACGCAACACAA
TCGATCGCCCGAGCGCTCGCTCTCACCTCGTCGCGCCTCGCCGGAGCGCG
ACCGACAGCGCGATAGAGACCGTACCCGAGATCGCAATCGCGATCGCCGG
AGAGAGCGCACGCGCGACCGTTCTCCGTTCAATTCTTCGTCGCGGCGCCG
CTCCAGATCTCACTCACCGGACTGGTCTGATGACCATCGCAGCTCCAAAC
GCCGCCGACATGCCCACTACGACTCCGTGCAGTGGGAACGCGCCTCCGAC
TCCCCAAAGCATGATGAGCCCCCGGTCAAGAGTCGTGCCGAAGAGGGCGA
CCCTCCGCCACGGAGACCGCGCAGAAGAGGTGGTCGCTCCAGGAGGCGCG
CGCGTGCCAACGCCAACCAACAAGCCTCGGCCGCCGATAAAGCTGACGGG
CCGTCGGACAGGCGCAACTCGAGGAGACAACGGTCTACAAGACGATGA
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protein sequence of Gchil5727.t1

>Gchil5727.t1 ID=Gchil5727.t1|Name=Gchil5727.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=316bp
MAAVALSNLPWWTSDADVEALVARAHAAARRAVVDVRFAVDAACGKSLGR
VVVALSAPELAEPLRAALAEQAPPSAAPSTPVAPDPDRSRSRRGKGRETL
IINKYGERVLVYRPDHDTDDSRRRPAARRPPRDSSDEFETAAKLNIPEEV
KERLRERMHNERHTQHNRSPERSLSPRRASPERDRQRDRDRTRDRNRDRR
RERTRDRSPFNSSSRRRSRSHSPDWSDDHRSSKRRRHAHYDSVQWERASD
SPKHDEPPVKSRAEEGDPPPRRPRRRGGRSRRRARANANQQASAADKADG
PSDRRNSRRQRSTRR*
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mRNA from alignment at tig00000015_pilon:1127216..1128901-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5727.t1 ID=Gchil5727.t1|Name=Gchil5727.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00000015_pilon:1127216..1128901- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCGTGGCGCTGAGCAATCTGCCCTGGTGGACGTCCGATGCCGA
CGTGGAGGCGCTGGTGGCGCGCGCGCACGCCGCCGCGCGTCGCGCCGTCG
TCGACGTGCGCTTTGCCGTCGACGCTGCGTGCGGAAAGAGCCTGGGACGC
GTCGTCGTTGCGCTGTCCGCGCCCGAGTTGGCCGAGCCGTTGCGCGCCGC
GCTGGCGGAACAGGCGCCGCCGTCGGCCGCACCGTCTACGCCCGTCGCCG
TTGTTGTGCTGCGTCCGCCCGACGTTGACGCCTTTTTGTACCCGTCGCCG
CTGCGCAACGCGCCGTCGCCGCCGCCGCCCTTCGCGCCGCCCCATATGCC
TCCCTTTCCGCCGCGCTCCATGTTCCCGCCCGCCATGGCGCCCCCCATGC
ACCCCCCGCCACCGCCACGCTTCATGCCGCCCCCCTTCATGTGGATGTCG
CCCAACCCCGCCCACCAGCCGCGCCACCACAACCACCGTCACCAGCACAA
GCAAAAGCAAGACAAGCACCACCATCACCACCACCAACAACAACAAAACC
AGCTACAACAACAACAACAACAACAGCTACAACAACAACAGCTACAACAA
CAACAACAACAACTACAACTACAACAACAACAACAACAACAAAAACAACA
ACAACAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCGCCCCAA
AGCCCGCCCCAGACCGCTCCAATCACCAGCAACATCCCCCCGCCGCGCAC
GACACCCATCAGCCACCCTCCCCGCGCCCTTCCCCACGTCCGTCCTCTCG
CACCCGTCGCTCCAAGTCCCCCACCCACTCCCCGCCCCCCAGTGACCATT
CACCGCACCGATCCTCGCCCCATCGCGCCTCCTCTCCCCCCCCCCGCTCA
CCGCGTCGCTCACCGCGTCGCTCACCGCGTCGCACACCACCTCGATCCGT
CTCCCCGTCCCGCTCGCGTCGCCGCCACTCCCCGCAGCCCGATCCCGACC
GCTCGCGTTCGCGCCGCGGAAAGGGTCGCGAAACGCTCATCATCAACAAG
TACGGCGAGCGCGTCCTCGTTTACCGCCCGGACCACGATACCGATGACTC
GCGCCGTCGCCCCGCCGCGCGAAGACCCCCCCGCGACTCCTCCGACGAAT
TTGAGACCGCTGCAAAGCTCAACATTCCCGAGGAGGTCAAGGAGCGTCTG
CGCGAACGTATGCACAATGAGAGGCACACGCAACACAATCGATCGCCCGA
GCGCTCGCTCTCACCTCGTCGCGCCTCGCCGGAGCGCGACCGACAGCGCG
ATAGAGACCGTACCCGAGATCGCAATCGCGATCGCCGGAGAGAGCGCACG
CGCGACCGTTCTCCGTTCAATTCTTCGTCGCGGCGCCGCTCCAGATCTCA
CTCACCGGACTGGTCTGATGACCATCGCAGCTCCAAACGCCGCCGACATG
CCCACTACGACTCCGTGCAGTGGGAACGCGCCTCCGACTCCCCAAAGCAT
GATGAGCCCCCGGTCAAGAGTCGTGCCGAAGAGGGCGACCCTCCGCCACG
GAGACCGCGCAGAAGAGGTGGTCGCTCCAGGAGGCGCGCGCGTGCCAACG
CCAACCAACAAGCCTCGGCCGCCGATAAAGCTGACGGGCCGTCGGACAGG
CGCAACTCGAGGAGACAACGGTCTACAAGACGATGA
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Coding sequence (CDS) from alignment at tig00000015_pilon:1127216..1128901-

>Gchil5727.t1 ID=Gchil5727.t1|Name=Gchil5727.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00000015_pilon:1127216..1128901- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCGTGGCGCTGAGCAATCTGCCCTGGTGGACGTCCGATGCCGA
CGTGGAGGCGCTGGTGGCGCGCGCGCACGCCGCCGCGCGTCGCGCCGTCG
TCGACGTGCGCTTTGCCGTCGACGCTGCGTGCGGAAAGAGCCTGGGACGC
GTCGTCGTTGCGCTGTCCGCGCCCGAGTTGGCCGAGCCGTTGCGCGCCGC
GCTGGCGGAACAGGCGCCGCCGTCGGCCGCACCGTCTACGCCCGTCGCCC
CCGATCCCGACCGCTCGCGTTCGCGCCGCGGAAAGGGTCGCGAAACGCTC
ATCATCAACAAGTACGGCGAGCGCGTCCTCGTTTACCGCCCGGACCACGA
TACCGATGACTCGCGCCGTCGCCCCGCCGCGCGAAGACCCCCCCGCGACT
CCTCCGACGAATTTGAGACCGCTGCAAAGCTCAACATTCCCGAGGAGGTC
AAGGAGCGTCTGCGCGAACGTATGCACAATGAGAGGCACACGCAACACAA
TCGATCGCCCGAGCGCTCGCTCTCACCTCGTCGCGCCTCGCCGGAGCGCG
ACCGACAGCGCGATAGAGACCGTACCCGAGATCGCAATCGCGATCGCCGG
AGAGAGCGCACGCGCGACCGTTCTCCGTTCAATTCTTCGTCGCGGCGCCG
CTCCAGATCTCACTCACCGGACTGGTCTGATGACCATCGCAGCTCCAAAC
GCCGCCGACATGCCCACTACGACTCCGTGCAGTGGGAACGCGCCTCCGAC
TCCCCAAAGCATGATGAGCCCCCGGTCAAGAGTCGTGCCGAAGAGGGCGA
CCCTCCGCCACGGAGACCGCGCAGAAGAGGTGGTCGCTCCAGGAGGCGCG
CGCGTGCCAACGCCAACCAACAAGCCTCGGCCGCCGATAAAGCTGACGGG
CCGTCGGACAGGCGCAACTCGAGGAGACAACGGTCTACAAGACGATGA
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