Gchil5726.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5726.t1
Unique NameGchil5726.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1126141..1126869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4006.Lus10028057
PFAMseIF3_subunit
Max annot lvl35493|Streptophyta
KEGG koko:K03245
KEGG Pathwayko03013,map03013
Evalue1.68e-12
EggNOG OGsKOG4813@1|root,KOG4813@2759|Eukaryota,37T5P@33090|Viridiplantae,3GFQB@35493|Streptophyta,4JJKE@91835|fabids
Descriptioncomponent of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
COG categoryJ
BRITEko00000,ko00001,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5726Gchil5726Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 1126141..1126869 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5726.t1.start1Gchil5726.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 1126141..1126143 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5726.t1.CDS1Gchil5726.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1126141..1126869 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5726.t1.exon1Gchil5726.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1126141..1126869 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5726.t1.stop1Gchil5726.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 1126867..1126869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5726.t1Gchil5726.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 1126141..1126869 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5726.t1 ID=Gchil5726.t1|Name=Gchil5726.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=243bp
MSNWDDDEWDVDPSPAAPTIPSASAYYGGDALGNWDDEDQSEDEEPQLKK
PSAPMKPSKARAKALKEKEEQERQREIEKVLARQKELDEMDAVQRKIREQ
QIVEEADFENAKELFMVGDASEGMEPPADPTIENFKPVTDADFSKFAQMI
GERCSVLNDNPKRTGRYMDFVKEMLRVVVKGLGPDDTKDLSTFVGVISNE
KRDEFKKSRGFKKKTNKKSHVRVDKMNDMRNDVYDDFADDFM*
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spliced messenger RNA

>Gchil5726.t1 ID=Gchil5726.t1|Name=Gchil5726.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000015_pilon:1126141..1126869+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAACTGGGATGATGACGAGTGGGACGTGGATCCATCCCCTGCAGC
ACCTACAATACCATCTGCATCGGCCTACTATGGTGGAGACGCTCTTGGCA
ACTGGGACGACGAGGACCAGTCGGAGGACGAAGAACCACAACTGAAGAAG
CCTTCCGCCCCCATGAAACCCTCCAAAGCCCGCGCAAAGGCACTGAAAGA
GAAAGAAGAGCAGGAACGACAACGCGAGATAGAAAAGGTTTTGGCACGTC
AAAAAGAGTTAGATGAAATGGATGCAGTGCAACGAAAAATTCGCGAGCAG
CAGATCGTAGAAGAAGCGGACTTTGAAAACGCCAAAGAACTCTTCATGGT
TGGAGACGCCTCAGAGGGAATGGAACCACCCGCAGACCCTACAATAGAGA
ACTTTAAACCAGTAACAGATGCCGACTTTTCCAAGTTTGCGCAAATGATT
GGCGAGCGGTGCTCAGTGCTGAACGACAATCCTAAAAGAACGGGGCGATA
TATGGACTTTGTTAAGGAGATGTTGCGAGTTGTGGTTAAAGGTCTCGGGC
CAGACGACACCAAAGACCTCTCAACCTTTGTTGGCGTGATAAGTAACGAA
AAGAGAGACGAATTCAAGAAATCCAGAGGCTTCAAGAAGAAGACAAACAA
AAAATCTCACGTGCGAGTAGACAAGATGAATGACATGCGGAACGACGTAT
ACGATGATTTTGCTGATGACTTTATGTAA
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protein sequence of Gchil5726.t1

>Gchil5726.t1 ID=Gchil5726.t1|Name=Gchil5726.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=243bp
MSNWDDDEWDVDPSPAAPTIPSASAYYGGDALGNWDDEDQSEDEEPQLKK
PSAPMKPSKARAKALKEKEEQERQREIEKVLARQKELDEMDAVQRKIREQ
QIVEEADFENAKELFMVGDASEGMEPPADPTIENFKPVTDADFSKFAQMI
GERCSVLNDNPKRTGRYMDFVKEMLRVVVKGLGPDDTKDLSTFVGVISNE
KRDEFKKSRGFKKKTNKKSHVRVDKMNDMRNDVYDDFADDFM*
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mRNA from alignment at tig00000015_pilon:1126141..1126869+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5726.t1 ID=Gchil5726.t1|Name=Gchil5726.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000015_pilon:1126141..1126869+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTAACTGGGATGATGACGAGTGGGACGTGGATCCATCCCCTGCAGC
ACCTACAATACCATCTGCATCGGCCTACTATGGTGGAGACGCTCTTGGCA
ACTGGGACGACGAGGACCAGTCGGAGGACGAAGAACCACAACTGAAGAAG
CCTTCCGCCCCCATGAAACCCTCCAAAGCCCGCGCAAAGGCACTGAAAGA
GAAAGAAGAGCAGGAACGACAACGCGAGATAGAAAAGGTTTTGGCACGTC
AAAAAGAGTTAGATGAAATGGATGCAGTGCAACGAAAAATTCGCGAGCAG
CAGATCGTAGAAGAAGCGGACTTTGAAAACGCCAAAGAACTCTTCATGGT
TGGAGACGCCTCAGAGGGAATGGAACCACCCGCAGACCCTACAATAGAGA
ACTTTAAACCAGTAACAGATGCCGACTTTTCCAAGTTTGCGCAAATGATT
GGCGAGCGGTGCTCAGTGCTGAACGACAATCCTAAAAGAACGGGGCGATA
TATGGACTTTGTTAAGGAGATGTTGCGAGTTGTGGTTAAAGGTCTCGGGC
CAGACGACACCAAAGACCTCTCAACCTTTGTTGGCGTGATAAGTAACGAA
AAGAGAGACGAATTCAAGAAATCCAGAGGCTTCAAGAAGAAGACAAACAA
AAAATCTCACGTGCGAGTAGACAAGATGAATGACATGCGGAACGACGTAT
ACGATGATTTTGCTGATGACTTTATGTAA
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Coding sequence (CDS) from alignment at tig00000015_pilon:1126141..1126869+

>Gchil5726.t1 ID=Gchil5726.t1|Name=Gchil5726.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=729bp|location=Sequence derived from alignment at tig00000015_pilon:1126141..1126869+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTAACTGGGATGATGACGAGTGGGACGTGGATCCATCCCCTGCAGC
ACCTACAATACCATCTGCATCGGCCTACTATGGTGGAGACGCTCTTGGCA
ACTGGGACGACGAGGACCAGTCGGAGGACGAAGAACCACAACTGAAGAAG
CCTTCCGCCCCCATGAAACCCTCCAAAGCCCGCGCAAAGGCACTGAAAGA
GAAAGAAGAGCAGGAACGACAACGCGAGATAGAAAAGGTTTTGGCACGTC
AAAAAGAGTTAGATGAAATGGATGCAGTGCAACGAAAAATTCGCGAGCAG
CAGATCGTAGAAGAAGCGGACTTTGAAAACGCCAAAGAACTCTTCATGGT
TGGAGACGCCTCAGAGGGAATGGAACCACCCGCAGACCCTACAATAGAGA
ACTTTAAACCAGTAACAGATGCCGACTTTTCCAAGTTTGCGCAAATGATT
GGCGAGCGGTGCTCAGTGCTGAACGACAATCCTAAAAGAACGGGGCGATA
TATGGACTTTGTTAAGGAGATGTTGCGAGTTGTGGTTAAAGGTCTCGGGC
CAGACGACACCAAAGACCTCTCAACCTTTGTTGGCGTGATAAGTAACGAA
AAGAGAGACGAATTCAAGAAATCCAGAGGCTTCAAGAAGAAGACAAACAA
AAAATCTCACGTGCGAGTAGACAAGATGAATGACATGCGGAACGACGTAT
ACGATGATTTTGCTGATGACTTTATGTAA
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