Gchil5679.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5679.t1
Unique Name	Gchil5679.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	236

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000015_pilon	contig	tig00000015_pilon:742163..742870 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1197706.AKKK01000043_gene1731
Preferred name	amy
PFAMs	Alpha-amylase,Alpha-amylase_C,CBM_20
Max annot lvl	201174\|Actinobacteria
KEGG ko	ko:K01176
KEGG Reaction	R02108,R02112,R11262
KEGG Pathway	ko00500,ko01100,ko04973,map00500,map01100,map04973
Evalue	0.000212
EggNOG OGs	COG0366@1\|root,COG0366@2\|Bacteria,2GKK1@201174\|Actinobacteria,1WB4G@1268\|Micrococcaceae
EC	3.2.1.1
Description	Aamy_C
COG category	G
CAZy	GH13
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5679	Gchil5679	Gracilaria chilensis NLEC103_M9 male	gene	tig00000015_pilon 742163..742870 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5679.t1.start1	Gchil5679.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000015_pilon 742163..742165 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5679.t1.CDS1	Gchil5679.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000015_pilon 742163..742870 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5679.t1.exon1	Gchil5679.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000015_pilon 742163..742870 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5679.t1.stop1	Gchil5679.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000015_pilon 742868..742870 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5679.t1	Gchil5679.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000015_pilon 742163..742870 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000015_pilon:742163..742870+
coding sequence from alignment at tig00000015_pilon:742163..742870+

mRNA sequence

>Gchil5679.t1 ID=Gchil5679.t1|Name=Gchil5679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=236bp
MRHCYLLEKLADGTFSTPSPDNRLRDASHIRHGFRVFRLPFRRIQFVLTN
GTNRNWEDNNGNNYVIDVPGRYVVEHGIRRVADADASECFQTVCRPNDRY
IQLSFRADLWQKCYCSCQIDNHQWTKPPGKQMTLVPNQQQARYYELVIEA
SRMACAFNDGGENWDSRLNNNYLIGCPGKYQVSDGTVRYISPSDNDLQLM
PMPEKPICAHPAQPGQSTSISSDACTVAKTRTEMV*

spliced messenger RNA

>Gchil5679.t1 ID=Gchil5679.t1|Name=Gchil5679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000015_pilon:742163..742870+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCACTGCTACCTCCTCGAGAAACTGGCCGACGGAACCTTCTCCAC
CCCATCACCCGACAATCGCCTTCGAGACGCCTCGCACATCCGCCATGGAT
TTCGCGTCTTTCGACTCCCCTTTCGACGCATACAGTTTGTGCTCACAAAC
GGCACCAATCGCAACTGGGAGGATAACAACGGCAACAACTACGTCATCGA
TGTTCCCGGTCGCTACGTCGTCGAGCACGGAATTCGTCGCGTTGCAGACG
CCGACGCCTCTGAATGCTTTCAAACTGTCTGTCGCCCAAATGATCGTTAC
ATCCAGCTTTCTTTTCGAGCCGATTTGTGGCAAAAGTGCTACTGCTCCTG
CCAGATTGACAACCACCAGTGGACCAAACCGCCAGGCAAACAGATGACCT
TGGTGCCAAACCAACAGCAAGCCCGTTATTACGAACTCGTTATAGAGGCT
TCTCGTATGGCGTGTGCCTTCAACGACGGTGGCGAGAACTGGGACTCCAG
ACTCAATAACAATTATCTTATTGGCTGTCCTGGCAAGTATCAAGTTTCGG
ATGGCACGGTCCGCTACATCTCACCCTCGGATAACGATCTGCAGCTGATG
CCCATGCCCGAAAAGCCCATCTGTGCCCACCCCGCCCAACCGGGCCAATC
CACCTCCATCTCTTCCGATGCATGTACAGTAGCTAAAACGAGAACTGAGA
TGGTGTAA

protein sequence of Gchil5679.t1

>Gchil5679.t1 ID=Gchil5679.t1|Name=Gchil5679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=236bp
MRHCYLLEKLADGTFSTPSPDNRLRDASHIRHGFRVFRLPFRRIQFVLTN
GTNRNWEDNNGNNYVIDVPGRYVVEHGIRRVADADASECFQTVCRPNDRY
IQLSFRADLWQKCYCSCQIDNHQWTKPPGKQMTLVPNQQQARYYELVIEA
SRMACAFNDGGENWDSRLNNNYLIGCPGKYQVSDGTVRYISPSDNDLQLM
PMPEKPICAHPAQPGQSTSISSDACTVAKTRTEMV*

mRNA from alignment at tig00000015_pilon:742163..742870+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5679.t1 ID=Gchil5679.t1|Name=Gchil5679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000015_pilon:742163..742870+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCACTGCTACCTCCTCGAGAAACTGGCCGACGGAACCTTCTCCAC
CCCATCACCCGACAATCGCCTTCGAGACGCCTCGCACATCCGCCATGGAT
TTCGCGTCTTTCGACTCCCCTTTCGACGCATACAGTTTGTGCTCACAAAC
GGCACCAATCGCAACTGGGAGGATAACAACGGCAACAACTACGTCATCGA
TGTTCCCGGTCGCTACGTCGTCGAGCACGGAATTCGTCGCGTTGCAGACG
CCGACGCCTCTGAATGCTTTCAAACTGTCTGTCGCCCAAATGATCGTTAC
ATCCAGCTTTCTTTTCGAGCCGATTTGTGGCAAAAGTGCTACTGCTCCTG
CCAGATTGACAACCACCAGTGGACCAAACCGCCAGGCAAACAGATGACCT
TGGTGCCAAACCAACAGCAAGCCCGTTATTACGAACTCGTTATAGAGGCT
TCTCGTATGGCGTGTGCCTTCAACGACGGTGGCGAGAACTGGGACTCCAG
ACTCAATAACAATTATCTTATTGGCTGTCCTGGCAAGTATCAAGTTTCGG
ATGGCACGGTCCGCTACATCTCACCCTCGGATAACGATCTGCAGCTGATG
CCCATGCCCGAAAAGCCCATCTGTGCCCACCCCGCCCAACCGGGCCAATC
CACCTCCATCTCTTCCGATGCATGTACAGTAGCTAAAACGAGAACTGAGA
TGGTGTAA

Coding sequence (CDS) from alignment at tig00000015_pilon:742163..742870+

>Gchil5679.t1 ID=Gchil5679.t1|Name=Gchil5679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=708bp|location=Sequence derived from alignment at tig00000015_pilon:742163..742870+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCACTGCTACCTCCTCGAGAAACTGGCCGACGGAACCTTCTCCAC
CCCATCACCCGACAATCGCCTTCGAGACGCCTCGCACATCCGCCATGGAT
TTCGCGTCTTTCGACTCCCCTTTCGACGCATACAGTTTGTGCTCACAAAC
GGCACCAATCGCAACTGGGAGGATAACAACGGCAACAACTACGTCATCGA
TGTTCCCGGTCGCTACGTCGTCGAGCACGGAATTCGTCGCGTTGCAGACG
CCGACGCCTCTGAATGCTTTCAAACTGTCTGTCGCCCAAATGATCGTTAC
ATCCAGCTTTCTTTTCGAGCCGATTTGTGGCAAAAGTGCTACTGCTCCTG
CCAGATTGACAACCACCAGTGGACCAAACCGCCAGGCAAACAGATGACCT
TGGTGCCAAACCAACAGCAAGCCCGTTATTACGAACTCGTTATAGAGGCT
TCTCGTATGGCGTGTGCCTTCAACGACGGTGGCGAGAACTGGGACTCCAG
ACTCAATAACAATTATCTTATTGGCTGTCCTGGCAAGTATCAAGTTTCGG
ATGGCACGGTCCGCTACATCTCACCCTCGGATAACGATCTGCAGCTGATG
CCCATGCCCGAAAAGCCCATCTGTGCCCACCCCGCCCAACCGGGCCAATC
CACCTCCATCTCTTCCGATGCATGTACAGTAGCTAAAACGAGAACTGAGA
TGGTGTAA