Gchil5621.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5621.t1
Unique NameGchil5621.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length90
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:74279..74629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002501864.1
PFAMsPet100
Max annot lvl33090|Viridiplantae
KEGG koko:K18187
Evalue2.24e-09
EggNOG OGs2CYCQ@1|root,2S3KV@2759|Eukaryota,37W49@33090|Viridiplantae
DescriptionPet100
COG categoryS
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5621Gchil5621Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 74279..74629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5621.t1Gchil5621.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 74279..74629 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5621.t1.start1Gchil5621.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 74279..74281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5621.t1.CDS1Gchil5621.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 74279..74410 +
Gchil5621.t1.CDS2Gchil5621.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 74492..74629 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5621.t1.exon1Gchil5621.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 74279..74410 +
Gchil5621.t1.exon2Gchil5621.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 74492..74629 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5621.t1.intron1Gchil5621.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000015_pilon 74411..74491 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5621.t1.stop1Gchil5621.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 74627..74629 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5621.t1 ID=Gchil5621.t1|Name=Gchil5621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=90bp
MASGHARRQWLEAFKFSVYVVTPIAATVYLGTGAYPYLEKIIRNTSYIVY
PPEGDTPPTSTNEIKLAREKRISKLQEYRADSQMGENRE*
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spliced messenger RNA

>Gchil5621.t1 ID=Gchil5621.t1|Name=Gchil5621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=270bp|location=Sequence derived from alignment at tig00000015_pilon:74279..74629+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTAGCGGACATGCTAGAAGGCAGTGGCTGGAGGCTTTCAAGTTCAG
CGTCTACGTCGTAACGCCCATTGCGGCAACGGTGTACCTGGGAACTGGAG
CGTACCCGTACTTGGAGAAGATCATACGTAACACTTCATATATTGTTTAC
CCACCAGAAGGTGATACACCTCCAACATCAACCAATGAGATTAAGCTTGC
TAGAGAAAAAAGAATATCGAAACTTCAGGAATACCGGGCCGATTCGCAAA
TGGGTGAGAACAGAGAATAA
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protein sequence of Gchil5621.t1

>Gchil5621.t1 ID=Gchil5621.t1|Name=Gchil5621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=90bp
MASGHARRQWLEAFKFSVYVVTPIAATVYLGTGAYPYLEKIIRNTSYIVY
PPEGDTPPTSTNEIKLAREKRISKLQEYRADSQMGENRE*
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mRNA from alignment at tig00000015_pilon:74279..74629+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5621.t1 ID=Gchil5621.t1|Name=Gchil5621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=351bp|location=Sequence derived from alignment at tig00000015_pilon:74279..74629+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTAGCGGACATGCTAGAAGGCAGTGGCTGGAGGCTTTCAAGTTCAG
CGTCTACGTCGTAACGCCCATTGCGGCAACGGTGTACCTGGGAACTGGAG
CGTACCCGTACTTGGAGAAGATCATACGTAACGTAAGTGTAGATTTCGAA
AGTTTCACATCATCAGTAAACAGCAGCTCTGACTGAATAGTTTTAATTGC
CGTGGCCTGTTAGACTTCATATATTGTTTACCCACCAGAAGGTGATACAC
CTCCAACATCAACCAATGAGATTAAGCTTGCTAGAGAAAAAAGAATATCG
AAACTTCAGGAATACCGGGCCGATTCGCAAATGGGTGAGAACAGAGAATA
A
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Coding sequence (CDS) from alignment at tig00000015_pilon:74279..74629+

>Gchil5621.t1 ID=Gchil5621.t1|Name=Gchil5621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=270bp|location=Sequence derived from alignment at tig00000015_pilon:74279..74629+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTAGCGGACATGCTAGAAGGCAGTGGCTGGAGGCTTTCAAGTTCAG
CGTCTACGTCGTAACGCCCATTGCGGCAACGGTGTACCTGGGAACTGGAG
CGTACCCGTACTTGGAGAAGATCATACGTAACACTTCATATATTGTTTAC
CCACCAGAAGGTGATACACCTCCAACATCAACCAATGAGATTAAGCTTGC
TAGAGAAAAAAGAATATCGAAACTTCAGGAATACCGGGCCGATTCGCAAA
TGGGTGAGAACAGAGAATAA
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