Gchil5557.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5557.t1
Unique Name	Gchil5557.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	298

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004418_pilon	contig	tig00004418_pilon:2404149..2405042 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_10449T0
Max annot lvl	2759\|Eukaryota
Evalue	6.68e-21
EggNOG OGs	2E99P@1\|root,2SFNP@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5557	Gchil5557	Gracilaria chilensis NLEC103_M9 male	gene	tig00004418_pilon 2404149..2405042 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5557.t1.start1	Gchil5557.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004418_pilon 2404149..2404151 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5557.t1.CDS1	Gchil5557.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004418_pilon 2404149..2405042 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5557.t1.exon1	Gchil5557.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004418_pilon 2404149..2405042 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5557.t1.stop1	Gchil5557.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004418_pilon 2405040..2405042 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5557.t1	Gchil5557.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004418_pilon 2404149..2405042 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004418_pilon:2404149..2405042+
coding sequence from alignment at tig00004418_pilon:2404149..2405042+

mRNA sequence

>Gchil5557.t1 ID=Gchil5557.t1|Name=Gchil5557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=298bp
MQFQRPASPLHILRIDVLLVIAFSALLLIFTIFNSRTTVRHLSASHTSDK
SDNPATLPAVALRDPFQNFSSDARSLLEKQSRVDYSVIWMSELEVNLVLR
YMRKVNTYLEWGSGGSTYNFPQFAKRAHSIEHDQKWCLRMTKEISLRPEL
SHLKYHCVPIPRGTKGWGIKSAFKEGSYEAFKPYIDQIENLGEPSFDMVL
IDGRARVDAAIKALSFLKRKSVVVMHDAERIWTYRIYANVTKYYDIIDSV
GGHGRQGLAIMKRKRNYSSLQGNHSAVQEILDNKYPSMKEIVASAAT*

spliced messenger RNA

>Gchil5557.t1 ID=Gchil5557.t1|Name=Gchil5557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00004418_pilon:2404149..2405042+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATTTCAACGTCCAGCCTCACCGTTGCACATTCTGCGCATCGATGT
CTTGTTGGTAATCGCATTCTCAGCCTTACTTCTCATCTTTACCATCTTCA
ATTCAAGAACCACCGTGCGTCATCTTTCAGCGTCACACACCTCTGACAAG
TCGGACAACCCCGCCACACTGCCAGCCGTTGCTCTCCGCGACCCTTTTCA
AAACTTTTCCAGTGATGCGCGATCATTACTTGAAAAGCAGTCGCGCGTTG
ACTATTCCGTCATTTGGATGAGCGAACTTGAAGTCAACCTTGTGCTCAGA
TACATGCGCAAAGTCAATACATATCTGGAATGGGGGAGCGGTGGAAGTAC
ATACAACTTTCCTCAGTTTGCAAAACGAGCCCATTCTATCGAACACGACC
AGAAATGGTGCTTACGGATGACAAAGGAAATCAGTTTGCGCCCTGAACTC
AGCCATCTCAAATACCACTGTGTACCCATTCCGCGCGGTACAAAAGGATG
GGGCATAAAAAGTGCTTTCAAAGAAGGATCTTATGAGGCCTTTAAGCCCT
ACATTGACCAAATAGAAAACCTTGGGGAGCCATCATTCGACATGGTTTTG
ATTGACGGGCGAGCCAGAGTTGATGCTGCTATCAAGGCTTTATCATTCCT
CAAACGGAAAAGTGTGGTCGTTATGCATGATGCAGAACGAATTTGGACGT
ACCGAATCTACGCGAATGTCACAAAATACTACGACATCATTGATTCTGTG
GGCGGCCATGGACGACAGGGACTTGCAATAATGAAAAGAAAACGAAACTA
CTCCTCTCTGCAGGGTAACCATTCAGCTGTGCAGGAAATACTGGATAACA
AGTATCCATCGATGAAAGAAATTGTTGCGAGTGCTGCCACTTGA

protein sequence of Gchil5557.t1

>Gchil5557.t1 ID=Gchil5557.t1|Name=Gchil5557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=298bp
MQFQRPASPLHILRIDVLLVIAFSALLLIFTIFNSRTTVRHLSASHTSDK
SDNPATLPAVALRDPFQNFSSDARSLLEKQSRVDYSVIWMSELEVNLVLR
YMRKVNTYLEWGSGGSTYNFPQFAKRAHSIEHDQKWCLRMTKEISLRPEL
SHLKYHCVPIPRGTKGWGIKSAFKEGSYEAFKPYIDQIENLGEPSFDMVL
IDGRARVDAAIKALSFLKRKSVVVMHDAERIWTYRIYANVTKYYDIIDSV
GGHGRQGLAIMKRKRNYSSLQGNHSAVQEILDNKYPSMKEIVASAAT*

mRNA from alignment at tig00004418_pilon:2404149..2405042+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5557.t1 ID=Gchil5557.t1|Name=Gchil5557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00004418_pilon:2404149..2405042+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAATTTCAACGTCCAGCCTCACCGTTGCACATTCTGCGCATCGATGT
CTTGTTGGTAATCGCATTCTCAGCCTTACTTCTCATCTTTACCATCTTCA
ATTCAAGAACCACCGTGCGTCATCTTTCAGCGTCACACACCTCTGACAAG
TCGGACAACCCCGCCACACTGCCAGCCGTTGCTCTCCGCGACCCTTTTCA
AAACTTTTCCAGTGATGCGCGATCATTACTTGAAAAGCAGTCGCGCGTTG
ACTATTCCGTCATTTGGATGAGCGAACTTGAAGTCAACCTTGTGCTCAGA
TACATGCGCAAAGTCAATACATATCTGGAATGGGGGAGCGGTGGAAGTAC
ATACAACTTTCCTCAGTTTGCAAAACGAGCCCATTCTATCGAACACGACC
AGAAATGGTGCTTACGGATGACAAAGGAAATCAGTTTGCGCCCTGAACTC
AGCCATCTCAAATACCACTGTGTACCCATTCCGCGCGGTACAAAAGGATG
GGGCATAAAAAGTGCTTTCAAAGAAGGATCTTATGAGGCCTTTAAGCCCT
ACATTGACCAAATAGAAAACCTTGGGGAGCCATCATTCGACATGGTTTTG
ATTGACGGGCGAGCCAGAGTTGATGCTGCTATCAAGGCTTTATCATTCCT
CAAACGGAAAAGTGTGGTCGTTATGCATGATGCAGAACGAATTTGGACGT
ACCGAATCTACGCGAATGTCACAAAATACTACGACATCATTGATTCTGTG
GGCGGCCATGGACGACAGGGACTTGCAATAATGAAAAGAAAACGAAACTA
CTCCTCTCTGCAGGGTAACCATTCAGCTGTGCAGGAAATACTGGATAACA
AGTATCCATCGATGAAAGAAATTGTTGCGAGTGCTGCCACTTGA

Coding sequence (CDS) from alignment at tig00004418_pilon:2404149..2405042+

>Gchil5557.t1 ID=Gchil5557.t1|Name=Gchil5557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00004418_pilon:2404149..2405042+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAATTTCAACGTCCAGCCTCACCGTTGCACATTCTGCGCATCGATGT
CTTGTTGGTAATCGCATTCTCAGCCTTACTTCTCATCTTTACCATCTTCA
ATTCAAGAACCACCGTGCGTCATCTTTCAGCGTCACACACCTCTGACAAG
TCGGACAACCCCGCCACACTGCCAGCCGTTGCTCTCCGCGACCCTTTTCA
AAACTTTTCCAGTGATGCGCGATCATTACTTGAAAAGCAGTCGCGCGTTG
ACTATTCCGTCATTTGGATGAGCGAACTTGAAGTCAACCTTGTGCTCAGA
TACATGCGCAAAGTCAATACATATCTGGAATGGGGGAGCGGTGGAAGTAC
ATACAACTTTCCTCAGTTTGCAAAACGAGCCCATTCTATCGAACACGACC
AGAAATGGTGCTTACGGATGACAAAGGAAATCAGTTTGCGCCCTGAACTC
AGCCATCTCAAATACCACTGTGTACCCATTCCGCGCGGTACAAAAGGATG
GGGCATAAAAAGTGCTTTCAAAGAAGGATCTTATGAGGCCTTTAAGCCCT
ACATTGACCAAATAGAAAACCTTGGGGAGCCATCATTCGACATGGTTTTG
ATTGACGGGCGAGCCAGAGTTGATGCTGCTATCAAGGCTTTATCATTCCT
CAAACGGAAAAGTGTGGTCGTTATGCATGATGCAGAACGAATTTGGACGT
ACCGAATCTACGCGAATGTCACAAAATACTACGACATCATTGATTCTGTG
GGCGGCCATGGACGACAGGGACTTGCAATAATGAAAAGAAAACGAAACTA
CTCCTCTCTGCAGGGTAACCATTCAGCTGTGCAGGAAATACTGGATAACA
AGTATCCATCGATGAAAGAAATTGTTGCGAGTGCTGCCACTTGA