Gchil5504.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5504.t1
Unique NameGchil5504.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length223
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2190643..2191311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog262724.TT_C1987
PFAMsEamA
Max annot lvl1297|Deinococcus-Thermus
Evalue9.76e-21
EggNOG OGsCOG0697@1|root,COG0697@2|Bacteria,1WIES@1297|Deinococcus-Thermus
DescriptionPFAM EamA-like transporter family
COG categoryEG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5504Gchil5504Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2190643..2191311 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5504.t1.start1Gchil5504.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2190643..2190645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5504.t1.CDS1Gchil5504.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2190643..2191311 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5504.t1.exon1Gchil5504.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2190643..2191311 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5504.t1.stop1Gchil5504.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2191309..2191311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5504.t1Gchil5504.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2190643..2191311 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5504.t1 ID=Gchil5504.t1|Name=Gchil5504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=223bp
MTALRHTTASRGAFLNQMSTIIVPIAAYLFGMEKRLNPSVIFASIVSIFG
VALLTLDNVSVSFSVLGDGIMLFTALLSTMFILRTKVHTKIAEKGPLVPA
KVLGQTTFAAVYFVVSSLFAPCASKNVANMFIGATPMLLMANVAMVLWGG
IFISWMSTVLQVKGQKLVPASETVIIFTSMPLWASIWAWPLGERFGPRGI
IGASLILGATAIAGTSGKKKDA*
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spliced messenger RNA

>Gchil5504.t1 ID=Gchil5504.t1|Name=Gchil5504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00004418_pilon:2190643..2191311+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCTTTGCGACATACAACCGCGTCCCGAGGCGCCTTTCTCAATCA
AATGTCTACCATCATCGTCCCGATTGCCGCCTACCTGTTTGGAATGGAGA
AACGTCTCAATCCAAGCGTCATTTTTGCCAGCATTGTGTCCATTTTCGGC
GTGGCTTTGCTCACATTGGATAATGTATCAGTTTCATTTTCAGTTTTGGG
AGATGGTATCATGCTGTTCACCGCCTTGCTCTCCACCATGTTCATCCTAC
GTACCAAAGTGCATACCAAAATCGCCGAGAAGGGGCCACTGGTGCCTGCA
AAGGTTCTAGGCCAGACTACGTTTGCAGCTGTTTATTTTGTCGTTTCCTC
CTTGTTTGCGCCTTGTGCGTCCAAAAACGTTGCCAACATGTTCATAGGTG
CCACTCCGATGCTGCTCATGGCCAATGTGGCAATGGTGCTCTGGGGTGGT
ATATTCATTTCTTGGATGAGCACTGTGTTACAAGTGAAGGGACAGAAATT
GGTTCCTGCTAGTGAAACCGTCATTATATTCACTAGCATGCCGTTGTGGG
CGTCTATTTGGGCGTGGCCTCTTGGCGAGCGTTTCGGTCCGCGTGGAATT
ATTGGCGCCAGTTTGATTTTGGGCGCCACTGCCATCGCCGGTACCTCCGG
GAAGAAGAAAGATGCATAA
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protein sequence of Gchil5504.t1

>Gchil5504.t1 ID=Gchil5504.t1|Name=Gchil5504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=223bp
MTALRHTTASRGAFLNQMSTIIVPIAAYLFGMEKRLNPSVIFASIVSIFG
VALLTLDNVSVSFSVLGDGIMLFTALLSTMFILRTKVHTKIAEKGPLVPA
KVLGQTTFAAVYFVVSSLFAPCASKNVANMFIGATPMLLMANVAMVLWGG
IFISWMSTVLQVKGQKLVPASETVIIFTSMPLWASIWAWPLGERFGPRGI
IGASLILGATAIAGTSGKKKDA*
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mRNA from alignment at tig00004418_pilon:2190643..2191311+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5504.t1 ID=Gchil5504.t1|Name=Gchil5504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00004418_pilon:2190643..2191311+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCTTTGCGACATACAACCGCGTCCCGAGGCGCCTTTCTCAATCA
AATGTCTACCATCATCGTCCCGATTGCCGCCTACCTGTTTGGAATGGAGA
AACGTCTCAATCCAAGCGTCATTTTTGCCAGCATTGTGTCCATTTTCGGC
GTGGCTTTGCTCACATTGGATAATGTATCAGTTTCATTTTCAGTTTTGGG
AGATGGTATCATGCTGTTCACCGCCTTGCTCTCCACCATGTTCATCCTAC
GTACCAAAGTGCATACCAAAATCGCCGAGAAGGGGCCACTGGTGCCTGCA
AAGGTTCTAGGCCAGACTACGTTTGCAGCTGTTTATTTTGTCGTTTCCTC
CTTGTTTGCGCCTTGTGCGTCCAAAAACGTTGCCAACATGTTCATAGGTG
CCACTCCGATGCTGCTCATGGCCAATGTGGCAATGGTGCTCTGGGGTGGT
ATATTCATTTCTTGGATGAGCACTGTGTTACAAGTGAAGGGACAGAAATT
GGTTCCTGCTAGTGAAACCGTCATTATATTCACTAGCATGCCGTTGTGGG
CGTCTATTTGGGCGTGGCCTCTTGGCGAGCGTTTCGGTCCGCGTGGAATT
ATTGGCGCCAGTTTGATTTTGGGCGCCACTGCCATCGCCGGTACCTCCGG
GAAGAAGAAAGATGCATAA
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Coding sequence (CDS) from alignment at tig00004418_pilon:2190643..2191311+

>Gchil5504.t1 ID=Gchil5504.t1|Name=Gchil5504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=669bp|location=Sequence derived from alignment at tig00004418_pilon:2190643..2191311+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCTTTGCGACATACAACCGCGTCCCGAGGCGCCTTTCTCAATCA
AATGTCTACCATCATCGTCCCGATTGCCGCCTACCTGTTTGGAATGGAGA
AACGTCTCAATCCAAGCGTCATTTTTGCCAGCATTGTGTCCATTTTCGGC
GTGGCTTTGCTCACATTGGATAATGTATCAGTTTCATTTTCAGTTTTGGG
AGATGGTATCATGCTGTTCACCGCCTTGCTCTCCACCATGTTCATCCTAC
GTACCAAAGTGCATACCAAAATCGCCGAGAAGGGGCCACTGGTGCCTGCA
AAGGTTCTAGGCCAGACTACGTTTGCAGCTGTTTATTTTGTCGTTTCCTC
CTTGTTTGCGCCTTGTGCGTCCAAAAACGTTGCCAACATGTTCATAGGTG
CCACTCCGATGCTGCTCATGGCCAATGTGGCAATGGTGCTCTGGGGTGGT
ATATTCATTTCTTGGATGAGCACTGTGTTACAAGTGAAGGGACAGAAATT
GGTTCCTGCTAGTGAAACCGTCATTATATTCACTAGCATGCCGTTGTGGG
CGTCTATTTGGGCGTGGCCTCTTGGCGAGCGTTTCGGTCCGCGTGGAATT
ATTGGCGCCAGTTTGATTTTGGGCGCCACTGCCATCGCCGGTACCTCCGG
GAAGAAGAAAGATGCATAA
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