Gchil5473.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5473.t2
Unique NameGchil5473.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length519
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1960629..1962414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709189.1
Preferred nameLUC7
PFAMsLUC7
Max annot lvl2759|Eukaryota
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0065003,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Evalue5.75e-13
EggNOG OGsCOG5200@1|root,KOG0796@2759|Eukaryota
DescriptionmRNA splice site selection
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5473Gchil5473Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1960629..1962414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5473.t2Gchil5473.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1960629..1962414 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5473.t2.start1Gchil5473.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1960629..1960631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5473.t2.CDS1Gchil5473.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1960629..1961631 +
Gchil5473.t2.CDS2Gchil5473.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1961767..1961934 +
Gchil5473.t2.CDS3Gchil5473.t2.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1962029..1962414 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5473.t2.exon1Gchil5473.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1960629..1961631 +
Gchil5473.t2.exon2Gchil5473.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1961767..1961934 +
Gchil5473.t2.exon3Gchil5473.t2.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1962029..1962414 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5473.t2.intron1Gchil5473.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1961632..1961766 +
Gchil5473.t2.intron2Gchil5473.t2.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1961935..1962028 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5473.t2.stop1Gchil5473.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1962412..1962414 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5473.t2 ID=Gchil5473.t2|Name=Gchil5473.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=519bp
MAYDSVRAQLDKLLGVDRNGPLTESAINEPPNYRDAKFCKHYLLGFCPND
LYIKQRSEPGSCRLEHSETAKSSFEKDEAEGRVREDEKLRWMRALLSECR
TIVAEEDRKIRGQARRLQESYGCGGELSGLMIRNFDTLKKLGMVSQNAKI
RVLSEIDENEPLSDDDTTMLHTSRDHSADANVDNLTKPEPTNNSDLPNEV
QSNSLKGAESEEINNPGSDIKKDAGEEDEGENDDDLDGFGLIKVIPAGDT
PEDPATNENVKEKGSSRSATDTKPTVTPTLDNPIGTEKSQMANKSKQPEA
ESNAENCTLDCTGEKIVSLASDEGNVNVQTMSNNGEKKEENNLMDKFYEI
GVGPDGLQMLDRKQSKRVCACCGGYISLVDAESRLLSHFGATTDMGVMAI
GSMVAFETTRIGVRAEIIAVEIEGAGMMIGTVIPTRVSHSTIHKEGKVVA
RGIQMLVMPMTTGTVRDTEMMIMTMIGLPDDMTGTMVGESVIDLHHHIVG
LDVGEGTTKWTLSCLLNM*
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spliced messenger RNA

>Gchil5473.t2 ID=Gchil5473.t2|Name=Gchil5473.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00004418_pilon:1960629..1962414+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATATGACTCAGTACGCGCACAACTGGACAAGCTACTGGGAGTTGA
TCGCAACGGCCCGCTGACTGAGTCCGCCATTAATGAACCTCCAAATTATC
GCGACGCAAAGTTCTGCAAGCACTATCTTCTTGGGTTTTGTCCCAATGAC
CTCTACATCAAGCAAAGAAGCGAGCCCGGCTCATGTCGCCTCGAGCACTC
TGAAACAGCCAAGTCTTCGTTTGAGAAGGATGAAGCGGAAGGTCGTGTGC
GTGAAGATGAGAAACTTCGCTGGATGCGCGCCTTGCTGAGCGAGTGTCGC
ACTATCGTCGCCGAGGAAGACCGAAAAATTCGCGGACAGGCCAGGCGTCT
GCAAGAGAGTTATGGTTGTGGTGGGGAGCTATCTGGTCTCATGATCCGCA
ACTTTGACACGTTGAAGAAACTTGGAATGGTCAGTCAAAACGCAAAGATT
CGAGTTTTAAGCGAGATAGATGAGAACGAACCCCTGTCTGACGATGATAC
TACCATGCTTCATACATCCCGAGATCATTCTGCGGATGCCAATGTTGATA
ACCTCACAAAACCAGAGCCCACGAACAATAGTGATTTGCCAAACGAAGTA
CAGTCGAATTCTTTGAAGGGTGCCGAGTCAGAAGAGATCAATAATCCCGG
CAGTGATATCAAGAAAGATGCTGGCGAAGAAGACGAGGGCGAAAATGACG
ACGACCTTGACGGCTTTGGCCTCATAAAAGTTATTCCAGCCGGCGATACT
CCGGAGGATCCAGCTACAAACGAAAACGTGAAAGAAAAAGGCTCATCGCG
AAGTGCCACAGATACGAAACCTACCGTTACACCTACGCTCGATAATCCCA
TCGGGACCGAAAAGAGTCAAATGGCGAATAAGAGCAAACAACCTGAAGCT
GAGAGTAACGCAGAAAACTGTACTTTGGATTGTACAGGTGAAAAGATTGT
ATCGCTTGCTTCGGATGAAGGTAATGTTAATGTTCAAACCATGTCAAACA
ACGGGGAAAAGAAAGAAGAAAACAACCTAATGGACAAGTTTTATGAGATT
GGTGTAGGTCCGGACGGGTTACAAATGCTTGATAGGAAACAAAGCAAACG
TGTGTGTGCTTGTTGTGGTGGGTACATAAGTCTGGTGGACGCCGAATCCC
GGCTTTTGTCCCATTTTGGCGCTACAACCGATATGGGCGTTATGGCGATC
GGGAGTATGGTCGCTTTCGAAACAACGAGGATTGGCGTTCGCGCCGAGAT
CATCGCGGTGGAAATCGAGGGAGCCGGTATGATGATCGGTACCGTGATTC
CCACTCGAGTATCCCACAGCACTATTCACAAGGAAGGAAAAGTGGTGGCG
AGGGGAATTCAAATGCTCGTGATGCCTATGACAACAGGTACGGTTCGCGA
TACAGAAATGATGATTATGACAATGATAGGTCTTCCGGACGACATGACCG
GTACCATGGTAGGAGAAAGCGTCATCGATCTCCATCACCACATCGTGGGT
CTCGACGTCGGCGAAGGCACTACTAAGTGGACTCTTTCTTGTCTTTTGAA
CATGTGA
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protein sequence of Gchil5473.t2

>Gchil5473.t2 ID=Gchil5473.t2|Name=Gchil5473.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=519bp
MAYDSVRAQLDKLLGVDRNGPLTESAINEPPNYRDAKFCKHYLLGFCPND
LYIKQRSEPGSCRLEHSETAKSSFEKDEAEGRVREDEKLRWMRALLSECR
TIVAEEDRKIRGQARRLQESYGCGGELSGLMIRNFDTLKKLGMVSQNAKI
RVLSEIDENEPLSDDDTTMLHTSRDHSADANVDNLTKPEPTNNSDLPNEV
QSNSLKGAESEEINNPGSDIKKDAGEEDEGENDDDLDGFGLIKVIPAGDT
PEDPATNENVKEKGSSRSATDTKPTVTPTLDNPIGTEKSQMANKSKQPEA
ESNAENCTLDCTGEKIVSLASDEGNVNVQTMSNNGEKKEENNLMDKFYEI
GVGPDGLQMLDRKQSKRVCACCGGYISLVDAESRLLSHFGATTDMGVMAI
GSMVAFETTRIGVRAEIIAVEIEGAGMMIGTVIPTRVSHSTIHKEGKVVA
RGIQMLVMPMTTGTVRDTEMMIMTMIGLPDDMTGTMVGESVIDLHHHIVG
LDVGEGTTKWTLSCLLNM*
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mRNA from alignment at tig00004418_pilon:1960629..1962414+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5473.t2 ID=Gchil5473.t2|Name=Gchil5473.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1786bp|location=Sequence derived from alignment at tig00004418_pilon:1960629..1962414+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCATATGACTCAGTACGCGCACAACTGGACAAGCTACTGGGAGTTGA
TCGCAACGGCCCGCTGACTGAGTCCGCCATTAATGAACCTCCAAATTATC
GCGACGCAAAGTTCTGCAAGCACTATCTTCTTGGGTTTTGTCCCAATGAC
CTCTACATCAAGCAAAGAAGCGAGCCCGGCTCATGTCGCCTCGAGCACTC
TGAAACAGCCAAGTCTTCGTTTGAGAAGGATGAAGCGGAAGGTCGTGTGC
GTGAAGATGAGAAACTTCGCTGGATGCGCGCCTTGCTGAGCGAGTGTCGC
ACTATCGTCGCCGAGGAAGACCGAAAAATTCGCGGACAGGCCAGGCGTCT
GCAAGAGAGTTATGGTTGTGGTGGGGAGCTATCTGGTCTCATGATCCGCA
ACTTTGACACGTTGAAGAAACTTGGAATGGTCAGTCAAAACGCAAAGATT
CGAGTTTTAAGCGAGATAGATGAGAACGAACCCCTGTCTGACGATGATAC
TACCATGCTTCATACATCCCGAGATCATTCTGCGGATGCCAATGTTGATA
ACCTCACAAAACCAGAGCCCACGAACAATAGTGATTTGCCAAACGAAGTA
CAGTCGAATTCTTTGAAGGGTGCCGAGTCAGAAGAGATCAATAATCCCGG
CAGTGATATCAAGAAAGATGCTGGCGAAGAAGACGAGGGCGAAAATGACG
ACGACCTTGACGGCTTTGGCCTCATAAAAGTTATTCCAGCCGGCGATACT
CCGGAGGATCCAGCTACAAACGAAAACGTGAAAGAAAAAGGCTCATCGCG
AAGTGCCACAGATACGAAACCTACCGTTACACCTACGCTCGATAATCCCA
TCGGGACCGAAAAGAGTCAAATGGCGAATAAGAGCAAACAACCTGAAGCT
GAGAGTAACGCAGAAAACTGTACTTTGGATTGTACAGGTGAAAAGATTGT
ATCGCTTGCTTCGGATGAAGGTAATGTTAATGTTCAAACCATGTCAAACA
ACGGTAAGGAGATTGTTATGAAAAATCATGAAACAACAGAGGAAAGTAAA
GGTGATGGGAAAAAGAACTCGAACGGAGAGAACTCAGAAACTAAAACAGA
GAAACACACCCAACTTTCTGTGATAAATTTGAACGCAGGGGAAAAGAAAG
AAGAAAACAACCTAATGGACAAGTTTTATGAGATTGGTGTAGGTCCGGAC
GGGTTACAAATGCTTGATAGGAAACAAAGCAAACGTGTGTGTGCTTGTTG
TGGTGGGTACATAAGTCTGGTGGACGCCGAATCCCGGCTTTTGTCCCATT
TTGGCGGTAAGTCTCACCACTCTTTAGCTCAACTTCGTGCCAAAATTCCA
GAAGTCGAAGCGGTATTAGCCAAAGGACCTCGTATTCCATTCGAGACAAG
CTACAACCGATATGGGCGTTATGGCGATCGGGAGTATGGTCGCTTTCGAA
ACAACGAGGATTGGCGTTCGCGCCGAGATCATCGCGGTGGAAATCGAGGG
AGCCGGTATGATGATCGGTACCGTGATTCCCACTCGAGTATCCCACAGCA
CTATTCACAAGGAAGGAAAAGTGGTGGCGAGGGGAATTCAAATGCTCGTG
ATGCCTATGACAACAGGTACGGTTCGCGATACAGAAATGATGATTATGAC
AATGATAGGTCTTCCGGACGACATGACCGGTACCATGGTAGGAGAAAGCG
TCATCGATCTCCATCACCACATCGTGGGTCTCGACGTCGGCGAAGGCACT
ACTAAGTGGACTCTTTCTTGTCTTTTGAACATGTGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:1960629..1962414+

>Gchil5473.t2 ID=Gchil5473.t2|Name=Gchil5473.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1557bp|location=Sequence derived from alignment at tig00004418_pilon:1960629..1962414+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCATATGACTCAGTACGCGCACAACTGGACAAGCTACTGGGAGTTGA
TCGCAACGGCCCGCTGACTGAGTCCGCCATTAATGAACCTCCAAATTATC
GCGACGCAAAGTTCTGCAAGCACTATCTTCTTGGGTTTTGTCCCAATGAC
CTCTACATCAAGCAAAGAAGCGAGCCCGGCTCATGTCGCCTCGAGCACTC
TGAAACAGCCAAGTCTTCGTTTGAGAAGGATGAAGCGGAAGGTCGTGTGC
GTGAAGATGAGAAACTTCGCTGGATGCGCGCCTTGCTGAGCGAGTGTCGC
ACTATCGTCGCCGAGGAAGACCGAAAAATTCGCGGACAGGCCAGGCGTCT
GCAAGAGAGTTATGGTTGTGGTGGGGAGCTATCTGGTCTCATGATCCGCA
ACTTTGACACGTTGAAGAAACTTGGAATGGTCAGTCAAAACGCAAAGATT
CGAGTTTTAAGCGAGATAGATGAGAACGAACCCCTGTCTGACGATGATAC
TACCATGCTTCATACATCCCGAGATCATTCTGCGGATGCCAATGTTGATA
ACCTCACAAAACCAGAGCCCACGAACAATAGTGATTTGCCAAACGAAGTA
CAGTCGAATTCTTTGAAGGGTGCCGAGTCAGAAGAGATCAATAATCCCGG
CAGTGATATCAAGAAAGATGCTGGCGAAGAAGACGAGGGCGAAAATGACG
ACGACCTTGACGGCTTTGGCCTCATAAAAGTTATTCCAGCCGGCGATACT
CCGGAGGATCCAGCTACAAACGAAAACGTGAAAGAAAAAGGCTCATCGCG
AAGTGCCACAGATACGAAACCTACCGTTACACCTACGCTCGATAATCCCA
TCGGGACCGAAAAGAGTCAAATGGCGAATAAGAGCAAACAACCTGAAGCT
GAGAGTAACGCAGAAAACTGTACTTTGGATTGTACAGGTGAAAAGATTGT
ATCGCTTGCTTCGGATGAAGGTAATGTTAATGTTCAAACCATGTCAAACA
ACGGGGAAAAGAAAGAAGAAAACAACCTAATGGACAAGTTTTATGAGATT
GGTGTAGGTCCGGACGGGTTACAAATGCTTGATAGGAAACAAAGCAAACG
TGTGTGTGCTTGTTGTGGTGGGTACATAAGTCTGGTGGACGCCGAATCCC
GGCTTTTGTCCCATTTTGGCGCTACAACCGATATGGGCGTTATGGCGATC
GGGAGTATGGTCGCTTTCGAAACAACGAGGATTGGCGTTCGCGCCGAGAT
CATCGCGGTGGAAATCGAGGGAGCCGGTATGATGATCGGTACCGTGATTC
CCACTCGAGTATCCCACAGCACTATTCACAAGGAAGGAAAAGTGGTGGCG
AGGGGAATTCAAATGCTCGTGATGCCTATGACAACAGGTACGGTTCGCGA
TACAGAAATGATGATTATGACAATGATAGGTCTTCCGGACGACATGACCG
GTACCATGGTAGGAGAAAGCGTCATCGATCTCCATCACCACATCGTGGGT
CTCGACGTCGGCGAAGGCACTACTAAGTGGACTCTTTCTTGTCTTTTGAA
CATGTGA
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