Gchil5373.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5373.t1
Unique NameGchil5373.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length418
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1313942..1315292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4096.XP_009802378.1
PFAMsGATA
Max annot lvl35493|Streptophyta
GOsGO:0000976,GO:0000977,GO:0000981,GO:0001012,GO:0001067,GO:0001085,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0007275,GO:0007623,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048511,GO:0048518,GO:0048522,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090351,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
Evalue3.62e-12
EggNOG OGsCOG5641@1|root,KOG1601@2759|Eukaryota,37NBN@33090|Viridiplantae,3G7EY@35493|Streptophyta,44P00@71274|asterids
DescriptionTranscriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5373Gchil5373Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1313942..1315292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5373.t1Gchil5373.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1313942..1315292 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5373.t1.stop1Gchil5373.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1313942..1313944 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5373.t1.CDS1Gchil5373.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1313942..1314690 -
Gchil5373.t1.CDS2Gchil5373.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1314788..1315292 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5373.t1.exon1Gchil5373.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1313942..1314690 -
Gchil5373.t1.exon2Gchil5373.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1314788..1315292 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5373.t1.intron1Gchil5373.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1314691..1314787 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5373.t1.start1Gchil5373.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1315290..1315292 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5373.t1 ID=Gchil5373.t1|Name=Gchil5373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=418bp
MGKIADPSLRLQCVHCHSTETPLWRAGPDGPKTLCNACGVRYKKGKLLLF
KDDHGNLTAVQRRDAVPFHIPPPSSKKASRKLASPVSQPSSPDLSAKRSA
IRKVPSEGAIAPPLGKKPRSRSRRANAGQLPGRYATKTLPDTMPLHYRSP
TSSPTVSPPTAPNRSPTHENRVPLLNFQRLYNVNEPPLSKLIDAHDESMF
PDMASLGLDCGPRANNNAVVLPMPVHASCVEQFSFAFSGCGNSLNIDAPD
RREALRGLLSDRTRKVSRTYEATVAAVARLCEQRYRNAKAKNMDAKLSAV
DDCRNFVRAFAHEQSCGYGLDDDGLCSVEQVAHMMCSSNSVGMMLPEKTA
HCNAVNYLKALVDSSELDGFAETCMVELLAEDVIAVLAQQGHAQFGKDAG
CRRGEAALRANAVATRA*
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spliced messenger RNA

>Gchil5373.t1 ID=Gchil5373.t1|Name=Gchil5373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00004418_pilon:1313942..1315292- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAAGATAGCCGATCCCTCCCTCCGTCTACAATGCGTTCACTGCCA
CAGCACAGAAACCCCGCTATGGCGCGCCGGTCCAGACGGCCCCAAAACCC
TTTGCAACGCCTGCGGCGTGCGCTACAAAAAGGGTAAGCTTCTTCTATTC
AAGGATGACCACGGCAATCTCACCGCCGTGCAACGTCGCGACGCCGTTCC
ATTTCACATTCCTCCTCCCTCCTCTAAAAAGGCTTCTAGGAAGCTTGCGT
CGCCTGTTTCGCAACCGTCGTCGCCCGATTTGTCGGCCAAGCGCTCTGCC
ATTCGCAAGGTGCCCAGCGAGGGTGCCATTGCGCCGCCCCTGGGTAAGAA
GCCGCGCTCCAGGTCGCGCCGAGCCAACGCCGGCCAGTTGCCTGGCCGCT
ACGCCACCAAGACTCTGCCGGACACCATGCCGCTGCACTACCGTTCCCCA
ACCTCCTCGCCGACCGTCTCTCCTCCGACCGCCCCCAACCGCTCCCCGAC
GCACGAAAATCGAGTGCCGTTGCTCAACTTTCAACGCCTCTACAACGTCA
ATGAACCGCCGCTGTCCAAGTTGATCGACGCGCACGACGAGAGCATGTTT
CCAGACATGGCCAGCCTGGGATTGGATTGCGGGCCTCGCGCGAACAACAA
CGCCGTCGTACTGCCCATGCCGGTGCATGCGTCGTGCGTGGAGCAGTTCA
GCTTTGCGTTCAGCGGGTGTGGAAACAGTCTCAACATTGACGCGCCCGAC
CGCCGCGAGGCGCTGCGAGGTCTGTTGTCAGACCGCACGCGCAAGGTGTC
GCGCACATACGAGGCCACGGTTGCGGCCGTGGCGCGCCTGTGTGAGCAAA
GGTACCGCAACGCCAAGGCGAAAAACATGGACGCCAAACTGTCGGCCGTC
GATGACTGTCGCAACTTTGTGCGTGCGTTTGCGCACGAGCAGTCGTGCGG
GTACGGGCTGGACGACGACGGACTGTGCAGCGTTGAGCAGGTGGCGCACA
TGATGTGCAGCAGCAATTCTGTGGGCATGATGCTGCCGGAAAAGACTGCG
CATTGCAACGCGGTAAACTACTTGAAGGCGCTGGTGGACAGCAGTGAGCT
GGACGGCTTTGCCGAGACTTGCATGGTGGAGCTGCTGGCGGAGGATGTGA
TTGCGGTTTTGGCGCAGCAGGGCCACGCGCAGTTTGGCAAGGATGCGGGC
TGTCGGCGGGGCGAGGCGGCGTTGCGTGCCAACGCGGTTGCGACGCGCGC
ATGA
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protein sequence of Gchil5373.t1

>Gchil5373.t1 ID=Gchil5373.t1|Name=Gchil5373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=418bp
MGKIADPSLRLQCVHCHSTETPLWRAGPDGPKTLCNACGVRYKKGKLLLF
KDDHGNLTAVQRRDAVPFHIPPPSSKKASRKLASPVSQPSSPDLSAKRSA
IRKVPSEGAIAPPLGKKPRSRSRRANAGQLPGRYATKTLPDTMPLHYRSP
TSSPTVSPPTAPNRSPTHENRVPLLNFQRLYNVNEPPLSKLIDAHDESMF
PDMASLGLDCGPRANNNAVVLPMPVHASCVEQFSFAFSGCGNSLNIDAPD
RREALRGLLSDRTRKVSRTYEATVAAVARLCEQRYRNAKAKNMDAKLSAV
DDCRNFVRAFAHEQSCGYGLDDDGLCSVEQVAHMMCSSNSVGMMLPEKTA
HCNAVNYLKALVDSSELDGFAETCMVELLAEDVIAVLAQQGHAQFGKDAG
CRRGEAALRANAVATRA*
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mRNA from alignment at tig00004418_pilon:1313942..1315292-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5373.t1 ID=Gchil5373.t1|Name=Gchil5373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1351bp|location=Sequence derived from alignment at tig00004418_pilon:1313942..1315292- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTAAGATAGCCGATCCCTCCCTCCGTCTACAATGCGTTCACTGCCA
CAGCACAGAAACCCCGCTATGGCGCGCCGGTCCAGACGGCCCCAAAACCC
TTTGCAACGCCTGCGGCGTGCGCTACAAAAAGGGTAAGCTTCTTCTATTC
AAGGATGACCACGGCAATCTCACCGCCGTGCAACGTCGCGACGCCGTTCC
ATTTCACATTCCTCCTCCCTCCTCTAAAAAGGCTTCTAGGAAGCTTGCGT
CGCCTGTTTCGCAACCGTCGTCGCCCGATTTGTCGGCCAAGCGCTCTGCC
ATTCGCAAGGTGCCCAGCGAGGGTGCCATTGCGCCGCCCCTGGGTAAGAA
GCCGCGCTCCAGGTCGCGCCGAGCCAACGCCGGCCAGTTGCCTGGCCGCT
ACGCCACCAAGACTCTGCCGGACACCATGCCGCTGCACTACCGTTCCCCA
ACCTCCTCGCCGACCGTCTCTCCTCCGACCGCCCCCAACCGCTCCCCGAC
GCACGGTACGTCCGCCTTATCCCCCCCCCCCGCTTTCTTCATCCTCCGCC
GCCGCCCCCAACGCGCGCTCACACCGTTTTCGTTGTTGTATTGTTTTTGC
AGAAAATCGAGTGCCGTTGCTCAACTTTCAACGCCTCTACAACGTCAATG
AACCGCCGCTGTCCAAGTTGATCGACGCGCACGACGAGAGCATGTTTCCA
GACATGGCCAGCCTGGGATTGGATTGCGGGCCTCGCGCGAACAACAACGC
CGTCGTACTGCCCATGCCGGTGCATGCGTCGTGCGTGGAGCAGTTCAGCT
TTGCGTTCAGCGGGTGTGGAAACAGTCTCAACATTGACGCGCCCGACCGC
CGCGAGGCGCTGCGAGGTCTGTTGTCAGACCGCACGCGCAAGGTGTCGCG
CACATACGAGGCCACGGTTGCGGCCGTGGCGCGCCTGTGTGAGCAAAGGT
ACCGCAACGCCAAGGCGAAAAACATGGACGCCAAACTGTCGGCCGTCGAT
GACTGTCGCAACTTTGTGCGTGCGTTTGCGCACGAGCAGTCGTGCGGGTA
CGGGCTGGACGACGACGGACTGTGCAGCGTTGAGCAGGTGGCGCACATGA
TGTGCAGCAGCAATTCTGTGGGCATGATGCTGCCGGAAAAGACTGCGCAT
TGCAACGCGGTAAACTACTTGAAGGCGCTGGTGGACAGCAGTGAGCTGGA
CGGCTTTGCCGAGACTTGCATGGTGGAGCTGCTGGCGGAGGATGTGATTG
CGGTTTTGGCGCAGCAGGGCCACGCGCAGTTTGGCAAGGATGCGGGCTGT
CGGCGGGGCGAGGCGGCGTTGCGTGCCAACGCGGTTGCGACGCGCGCATG
A
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Coding sequence (CDS) from alignment at tig00004418_pilon:1313942..1315292-

>Gchil5373.t1 ID=Gchil5373.t1|Name=Gchil5373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1254bp|location=Sequence derived from alignment at tig00004418_pilon:1313942..1315292- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTAAGATAGCCGATCCCTCCCTCCGTCTACAATGCGTTCACTGCCA
CAGCACAGAAACCCCGCTATGGCGCGCCGGTCCAGACGGCCCCAAAACCC
TTTGCAACGCCTGCGGCGTGCGCTACAAAAAGGGTAAGCTTCTTCTATTC
AAGGATGACCACGGCAATCTCACCGCCGTGCAACGTCGCGACGCCGTTCC
ATTTCACATTCCTCCTCCCTCCTCTAAAAAGGCTTCTAGGAAGCTTGCGT
CGCCTGTTTCGCAACCGTCGTCGCCCGATTTGTCGGCCAAGCGCTCTGCC
ATTCGCAAGGTGCCCAGCGAGGGTGCCATTGCGCCGCCCCTGGGTAAGAA
GCCGCGCTCCAGGTCGCGCCGAGCCAACGCCGGCCAGTTGCCTGGCCGCT
ACGCCACCAAGACTCTGCCGGACACCATGCCGCTGCACTACCGTTCCCCA
ACCTCCTCGCCGACCGTCTCTCCTCCGACCGCCCCCAACCGCTCCCCGAC
GCACGAAAATCGAGTGCCGTTGCTCAACTTTCAACGCCTCTACAACGTCA
ATGAACCGCCGCTGTCCAAGTTGATCGACGCGCACGACGAGAGCATGTTT
CCAGACATGGCCAGCCTGGGATTGGATTGCGGGCCTCGCGCGAACAACAA
CGCCGTCGTACTGCCCATGCCGGTGCATGCGTCGTGCGTGGAGCAGTTCA
GCTTTGCGTTCAGCGGGTGTGGAAACAGTCTCAACATTGACGCGCCCGAC
CGCCGCGAGGCGCTGCGAGGTCTGTTGTCAGACCGCACGCGCAAGGTGTC
GCGCACATACGAGGCCACGGTTGCGGCCGTGGCGCGCCTGTGTGAGCAAA
GGTACCGCAACGCCAAGGCGAAAAACATGGACGCCAAACTGTCGGCCGTC
GATGACTGTCGCAACTTTGTGCGTGCGTTTGCGCACGAGCAGTCGTGCGG
GTACGGGCTGGACGACGACGGACTGTGCAGCGTTGAGCAGGTGGCGCACA
TGATGTGCAGCAGCAATTCTGTGGGCATGATGCTGCCGGAAAAGACTGCG
CATTGCAACGCGGTAAACTACTTGAAGGCGCTGGTGGACAGCAGTGAGCT
GGACGGCTTTGCCGAGACTTGCATGGTGGAGCTGCTGGCGGAGGATGTGA
TTGCGGTTTTGGCGCAGCAGGGCCACGCGCAGTTTGGCAAGGATGCGGGC
TGTCGGCGGGGCGAGGCGGCGTTGCGTGCCAACGCGGTTGCGACGCGCGC
ATGA
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