Gchil5369.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5369.t1
Unique NameGchil5369.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length367
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1296491..1297751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10141.ENSCPOP00000005666
Preferred namePPP1R7
PFAMsLRR_4,LRR_8,LRR_9
Max annot lvl33208|Metazoa
KEGG koko:K17550
GOsGO:0002009,GO:0002164,GO:0002165,GO:0002168,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0007059,GO:0007163,GO:0007275,GO:0007444,GO:0007552,GO:0007560,GO:0008150,GO:0008285,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0010921,GO:0016333,GO:0016334,GO:0016335,GO:0016336,GO:0019208,GO:0019220,GO:0019222,GO:0019888,GO:0030234,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0035239,GO:0035295,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0042127,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043666,GO:0044424,GO:0044464,GO:0045177,GO:0045937,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051336,GO:0060255,GO:0060429,GO:0060562,GO:0065007,GO:0065009,GO:0080090,GO:0098772
Evalue0.000356
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota,38C24@33154|Opisthokonta,3BCV2@33208|Metazoa,3CR8A@33213|Bilateria,48335@7711|Chordata,48YHU@7742|Vertebrata,3JDVJ@40674|Mammalia,35MNT@314146|Euarchontoglires,4Q2QF@9989|Rodentia
DescriptionProtein phosphatase 1, regulatory subunit 7
COG categoryT
BRITEko00000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5369Gchil5369Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1296491..1297751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5369.t1Gchil5369.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1296491..1297751 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5369.t1.start1Gchil5369.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1296491..1296493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5369.t1.CDS1Gchil5369.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1296491..1297577 +
Gchil5369.t1.CDS2Gchil5369.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1297642..1297650 +
Gchil5369.t1.CDS3Gchil5369.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1297747..1297751 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5369.t1.exon1Gchil5369.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1296491..1297577 +
Gchil5369.t1.exon2Gchil5369.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1297642..1297650 +
Gchil5369.t1.exon3Gchil5369.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1297747..1297751 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5369.t1.intron1Gchil5369.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1297578..1297641 +
Gchil5369.t1.intron2Gchil5369.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1297651..1297746 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5369.t1.stop1Gchil5369.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1297749..1297751 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5369.t1 ID=Gchil5369.t1|Name=Gchil5369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=367bp
MEEGDSNFPSESAKEQPLSVKTDTQASSSKMEMVDESYEEWIDRTNEPLH
FIGNGYELTQTLTNLYLTNNRIPVIEHLEKCINLRELVLRQNAIQKVEGL
ENLVSLSELDLYMNQITEIPPTTFATNKKLQKLDLSFNQLRDISNLPCAN
LANLEELYLISNKIKVIRGLCGMPKLSMLELGDNRIRIIENLDKLKSLEG
LWLGRNKITKIENLSSLKNLKRLSLQSNRIEAVENLEHLTLLEEVYLSHN
GLKSMKGIKNLKNLRVLDLGSNFIENIEEVECLKRLKEFWVNGNKLGSLE
ELALLEGCEELETVYLEFNPLASDPQYRRKALNILPSSLEQLDALLVSDV
YKELAEQESLQEIPNA*
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spliced messenger RNA

>Gchil5369.t1 ID=Gchil5369.t1|Name=Gchil5369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00004418_pilon:1296491..1297751+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAAGGCGATTCCAATTTTCCATCCGAATCTGCAAAAGAACAACC
CCTCTCTGTCAAGACCGACACTCAAGCTTCATCATCGAAGATGGAAATGG
TGGATGAATCGTACGAGGAGTGGATAGACCGCACAAACGAACCGCTACAC
TTCATTGGTAATGGCTATGAACTGACTCAAACTCTAACAAACCTTTACTT
GACCAATAATCGAATACCGGTCATTGAGCACTTGGAAAAATGCATCAATC
TCCGCGAGTTAGTTCTTCGACAGAATGCCATCCAGAAAGTTGAAGGTCTG
GAGAATCTTGTTAGTTTATCTGAATTGGATCTTTACATGAATCAAATTAC
TGAAATTCCTCCGACAACATTTGCGACCAACAAAAAGTTGCAAAAGCTCG
ACCTCAGTTTCAACCAGTTGCGAGACATCAGCAATTTGCCGTGTGCGAAC
CTCGCAAACCTTGAAGAGCTATACTTAATTAGTAACAAAATCAAAGTGAT
ACGCGGTTTGTGTGGTATGCCTAAGCTTTCTATGTTGGAACTGGGTGACA
ACAGAATACGTATTATCGAAAATCTGGACAAGCTCAAAAGCCTCGAGGGT
CTATGGCTCGGGCGAAACAAAATTACCAAGATCGAAAACCTTAGTTCTCT
CAAGAATTTGAAACGGCTTAGTCTGCAGAGCAACCGCATAGAAGCTGTGG
AGAATCTTGAACATCTCACTCTGCTTGAAGAAGTTTACTTAAGCCACAAT
GGGCTCAAATCCATGAAAGGTATAAAGAACCTCAAGAATTTGCGTGTACT
TGATTTGGGAAGCAATTTTATAGAGAACATCGAGGAGGTCGAGTGTCTAA
AGCGTCTAAAGGAATTCTGGGTGAATGGGAACAAGCTCGGAAGCTTAGAA
GAACTAGCATTGCTCGAAGGCTGCGAAGAGTTGGAGACGGTGTATCTAGA
ATTCAATCCTCTCGCTAGTGATCCCCAATATCGGCGGAAAGCACTGAACA
TTCTTCCGTCCTCTTTGGAGCAACTTGACGCTCTTTTGGTGTCTGACGTG
TACAAGGAGCTAGCTGAGCAAGAAAGTCTACAAGAGATCCCAAACGCATA
G
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protein sequence of Gchil5369.t1

>Gchil5369.t1 ID=Gchil5369.t1|Name=Gchil5369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=367bp
MEEGDSNFPSESAKEQPLSVKTDTQASSSKMEMVDESYEEWIDRTNEPLH
FIGNGYELTQTLTNLYLTNNRIPVIEHLEKCINLRELVLRQNAIQKVEGL
ENLVSLSELDLYMNQITEIPPTTFATNKKLQKLDLSFNQLRDISNLPCAN
LANLEELYLISNKIKVIRGLCGMPKLSMLELGDNRIRIIENLDKLKSLEG
LWLGRNKITKIENLSSLKNLKRLSLQSNRIEAVENLEHLTLLEEVYLSHN
GLKSMKGIKNLKNLRVLDLGSNFIENIEEVECLKRLKEFWVNGNKLGSLE
ELALLEGCEELETVYLEFNPLASDPQYRRKALNILPSSLEQLDALLVSDV
YKELAEQESLQEIPNA*
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mRNA from alignment at tig00004418_pilon:1296491..1297751+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5369.t1 ID=Gchil5369.t1|Name=Gchil5369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1261bp|location=Sequence derived from alignment at tig00004418_pilon:1296491..1297751+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGAAGGCGATTCCAATTTTCCATCCGAATCTGCAAAAGAACAACC
CCTCTCTGTCAAGACCGACACTCAAGCTTCATCATCGAAGATGGAAATGG
TGGATGAATCGTACGAGGAGTGGATAGACCGCACAAACGAACCGCTACAC
TTCATTGGTAATGGCTATGAACTGACTCAAACTCTAACAAACCTTTACTT
GACCAATAATCGAATACCGGTCATTGAGCACTTGGAAAAATGCATCAATC
TCCGCGAGTTAGTTCTTCGACAGAATGCCATCCAGAAAGTTGAAGGTCTG
GAGAATCTTGTTAGTTTATCTGAATTGGATCTTTACATGAATCAAATTAC
TGAAATTCCTCCGACAACATTTGCGACCAACAAAAAGTTGCAAAAGCTCG
ACCTCAGTTTCAACCAGTTGCGAGACATCAGCAATTTGCCGTGTGCGAAC
CTCGCAAACCTTGAAGAGCTATACTTAATTAGTAACAAAATCAAAGTGAT
ACGCGGTTTGTGTGGTATGCCTAAGCTTTCTATGTTGGAACTGGGTGACA
ACAGAATACGTATTATCGAAAATCTGGACAAGCTCAAAAGCCTCGAGGGT
CTATGGCTCGGGCGAAACAAAATTACCAAGATCGAAAACCTTAGTTCTCT
CAAGAATTTGAAACGGCTTAGTCTGCAGAGCAACCGCATAGAAGCTGTGG
AGAATCTTGAACATCTCACTCTGCTTGAAGAAGTTTACTTAAGCCACAAT
GGGCTCAAATCCATGAAAGGTATAAAGAACCTCAAGAATTTGCGTGTACT
TGATTTGGGAAGCAATTTTATAGAGAACATCGAGGAGGTCGAGTGTCTAA
AGCGTCTAAAGGAATTCTGGGTGAATGGGAACAAGCTCGGAAGCTTAGAA
GAACTAGCATTGCTCGAAGGCTGCGAAGAGTTGGAGACGGTGTATCTAGA
ATTCAATCCTCTCGCTAGTGATCCCCAATATCGGCGGAAAGCACTGAACA
TTCTTCCGTCCTCTTTGGAGCAACTTGACGCTCTTTTGGTGTCTGACGTG
TACAAGGAGCTAGCTGAGCAAGAAAGTCTACAAGAGAGTAAGTCAAGGAG
CTCCGAGTCTTCCGGAAACACTTGAAAATGAACTCTGTGCAAGGCTGCCA
GTCCCAAACGGTAAGAAATACACGATTCTATGCCGTCATTCACGAAGGAA
TGAAGAGACGTAGGATTTTTGAATTACTAACTGATGTCGATATGCGCGCG
GTCTAGCATAG
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Coding sequence (CDS) from alignment at tig00004418_pilon:1296491..1297751+

>Gchil5369.t1 ID=Gchil5369.t1|Name=Gchil5369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1101bp|location=Sequence derived from alignment at tig00004418_pilon:1296491..1297751+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGAAGGCGATTCCAATTTTCCATCCGAATCTGCAAAAGAACAACC
CCTCTCTGTCAAGACCGACACTCAAGCTTCATCATCGAAGATGGAAATGG
TGGATGAATCGTACGAGGAGTGGATAGACCGCACAAACGAACCGCTACAC
TTCATTGGTAATGGCTATGAACTGACTCAAACTCTAACAAACCTTTACTT
GACCAATAATCGAATACCGGTCATTGAGCACTTGGAAAAATGCATCAATC
TCCGCGAGTTAGTTCTTCGACAGAATGCCATCCAGAAAGTTGAAGGTCTG
GAGAATCTTGTTAGTTTATCTGAATTGGATCTTTACATGAATCAAATTAC
TGAAATTCCTCCGACAACATTTGCGACCAACAAAAAGTTGCAAAAGCTCG
ACCTCAGTTTCAACCAGTTGCGAGACATCAGCAATTTGCCGTGTGCGAAC
CTCGCAAACCTTGAAGAGCTATACTTAATTAGTAACAAAATCAAAGTGAT
ACGCGGTTTGTGTGGTATGCCTAAGCTTTCTATGTTGGAACTGGGTGACA
ACAGAATACGTATTATCGAAAATCTGGACAAGCTCAAAAGCCTCGAGGGT
CTATGGCTCGGGCGAAACAAAATTACCAAGATCGAAAACCTTAGTTCTCT
CAAGAATTTGAAACGGCTTAGTCTGCAGAGCAACCGCATAGAAGCTGTGG
AGAATCTTGAACATCTCACTCTGCTTGAAGAAGTTTACTTAAGCCACAAT
GGGCTCAAATCCATGAAAGGTATAAAGAACCTCAAGAATTTGCGTGTACT
TGATTTGGGAAGCAATTTTATAGAGAACATCGAGGAGGTCGAGTGTCTAA
AGCGTCTAAAGGAATTCTGGGTGAATGGGAACAAGCTCGGAAGCTTAGAA
GAACTAGCATTGCTCGAAGGCTGCGAAGAGTTGGAGACGGTGTATCTAGA
ATTCAATCCTCTCGCTAGTGATCCCCAATATCGGCGGAAAGCACTGAACA
TTCTTCCGTCCTCTTTGGAGCAACTTGACGCTCTTTTGGTGTCTGACGTG
TACAAGGAGCTAGCTGAGCAAGAAAGTCTACAAGAGATCCCAAACGCATA
G
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