Gchil5366.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5366.t1
Unique Name	Gchil5366.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	625

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004418_pilon	contig	tig00004418_pilon:1288476..1290350 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7029.ACYPI010193-PA
Preferred name	KLHL3
PFAMs	BACK,BTB,Kelch_1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K10443,ko:K10457
GOs	GO:0000003,GO:0000151,GO:0000209,GO:0001655,GO:0001725,GO:0001822,GO:0002009,GO:0003006,GO:0003008,GO:0003014,GO:0003096,GO:0003674,GO:0003779,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006996,GO:0007010,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007300,GO:0007301,GO:0007349,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0015629,GO:0015672,GO:0016043,GO:0016567,GO:0019538,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030001,GO:0030027,GO:0030029,GO:0030036,GO:0030154,GO:0030163,GO:0030717,GO:0030723,GO:0030725,GO:0031252,GO:0031461,GO:0031463,GO:0032432,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0035183,GO:0035239,GO:0035295,GO:0035324,GO:0036211,GO:0042592,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043062,GO:0043063,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045171,GO:0045172,GO:0045478,GO:0046983,GO:0048468,GO:0048477,GO:0048513,GO:0048609,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0060429,GO:0060562,GO:0060993,GO:0061326,GO:0061333,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070192,GO:0070293,GO:0070294,GO:0070647,GO:0070936,GO:0071704,GO:0071840,GO:0072001,GO:0072006,GO:0072009,GO:0072017,GO:0072028,GO:0072073,GO:0072078,GO:0072080,GO:0072088,GO:0072156,GO:0097517,GO:0120025,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1903046,GO:1990234
Evalue	1.46e-12
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota,38FPI@33154\|Opisthokonta,3BB3K@33208\|Metazoa,3CS4P@33213\|Bilateria,41VFR@6656\|Arthropoda,3SHMR@50557\|Insecta
Description	BTB And C-terminal Kelch
COG category	T
BRITE	ko00000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5366	Gchil5366	Gracilaria chilensis NLEC103_M9 male	gene	tig00004418_pilon 1288476..1290350 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5366.t1.start1	Gchil5366.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004418_pilon 1288476..1288478 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5366.t1.CDS1	Gchil5366.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004418_pilon 1288476..1290350 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5366.t1.exon1	Gchil5366.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004418_pilon 1288476..1290350 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5366.t1.stop1	Gchil5366.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004418_pilon 1290348..1290350 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5366.t1	Gchil5366.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004418_pilon 1288476..1290350 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004418_pilon:1288476..1290350+
coding sequence from alignment at tig00004418_pilon:1288476..1290350+

mRNA sequence

>Gchil5366.t1 ID=Gchil5366.t1|Name=Gchil5366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=625bp
MASPRPAARSPSANTLRRLLHPPMRDMRDVTLIPAKSPGRTIRAHRFVLA
AASPVFRASLAADPSNNVLTLAHADVDALDAALQYVYGSDDAINRLPLHA
LWTTLTTCISYAMHLPSKAVQHRIVHTISYTNVFYHWAMAERYNLVPVQL
KCRTLVKRHFVLVSKQPQFVHITSQLLARILRIHDLIVNGEDDVFQALER
WLAYDVQARAEQALHLLRLVRLPTIDDIVLLRVCRSAYFGGHNEFYQLLL
EALIRRTEVRLIHKPRVHAILEHWKSAKGPGPSSRYTRSLSFKPLGANDF
ELFPSPQLSQSHKPQPQPPASPAPTTAAAASERDYNRKEDRTVLFQGNFP
LRWYKSVRFRPRSPTSLLFSVVIPKWSLCRKRFVSESRSFLDHKWSLWVD
PFSSIPSRGTRDSSSLSPQLPSQRRPSKRDSAGAFEGDTYEPADDPTSPV
SPTRSKVLVLDETDYISIYLCCESEVTLRKMGPAEQIDARVDFGLFVASC
SEEYGMERKVCVGRRFKSSGQAMGFRRHIRRNRLHSPTAGLYNREKDELV
VGAHLVAPEVQHSRLPSELPSELTTQLGSASLTGDDFRSESPLSPSPTQL
AGSRMTTMETEPSPILTSTSRVST*

spliced messenger RNA

>Gchil5366.t1 ID=Gchil5366.t1|Name=Gchil5366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1875bp|location=Sequence derived from alignment at tig00004418_pilon:1288476..1290350+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCCCCGCGCCCCGCCGCGCGCTCGCCTAGCGCAAACACCCTGCG
TCGTCTGCTTCACCCGCCCATGCGCGACATGCGCGACGTCACCCTCATTC
CCGCCAAATCTCCGGGTCGCACCATTCGCGCCCACCGCTTTGTGTTGGCC
GCCGCCTCACCTGTTTTCCGCGCCTCGCTCGCCGCAGACCCCTCCAACAA
CGTCCTCACGCTTGCCCACGCCGATGTCGACGCGCTTGATGCCGCCCTGC
AGTACGTGTACGGAAGCGATGATGCAATCAATCGTCTCCCGTTGCACGCC
CTGTGGACTACGCTCACCACCTGCATCTCCTACGCAATGCACCTTCCCTC
CAAGGCTGTGCAGCACCGCATCGTGCACACCATCAGTTATACAAACGTTT
TCTACCACTGGGCCATGGCGGAGCGCTACAATTTGGTGCCGGTCCAACTC
AAATGTCGAACGCTTGTCAAGCGTCACTTCGTGCTCGTGTCCAAGCAGCC
CCAATTTGTGCACATCACCTCTCAGCTGTTGGCCCGCATTCTACGCATAC
ACGATTTGATCGTCAACGGCGAAGACGACGTCTTCCAGGCGCTTGAGCGT
TGGCTCGCCTACGACGTTCAAGCCCGCGCCGAGCAAGCCCTCCATCTGTT
GCGACTCGTCCGTCTCCCAACCATCGACGACATTGTGTTGCTGCGCGTTT
GTCGCAGCGCCTATTTTGGCGGTCACAATGAGTTTTATCAACTCTTGCTT
GAGGCCCTCATCCGAAGAACCGAGGTCCGCCTCATTCACAAACCCCGCGT
GCACGCCATTCTCGAGCATTGGAAATCGGCCAAGGGGCCTGGCCCGTCTT
CGCGCTACACGCGCAGTCTGTCCTTCAAGCCGCTGGGCGCAAACGACTTT
GAGCTTTTCCCTTCCCCACAACTGTCGCAATCGCACAAAccgcaacctca
gccccccgcctcccctgcgcccaccactgccgccgccgcctccgAGCGCG
ATTACAACCGCAAGGAGGACCGTACCGTGCTGTTTCAGGGCAATTTCCCC
CTGCGTTGGTACAAGAGCGTGCGCTTTCGCCCGAGATCGCCTACTTCGCT
CTTGTTCTCCGTTGTCATTCCCAAGTGGTCCCTGTGTCGAAAGCGCTTTG
TTTCCGAGTCAAGAAGCTTTCTCGATCACAAGTGGTCGCTTTGGGTCGAC
CCGTTTTCATCCATTCCTTCGCGTGGTACGCGCGACTCGTCGTCGCTGTC
CCCGCAACTGCCATCGCAACGGAGGCCATCAAAACGCGACAGTGCAGGTG
CGTTCGAGGGAGACACATACGAGCCAGCTGACGATCCTACCTCGCCCGTG
TCGCCCACTCGCTCAAAAGTGCTTGTACTCGACGAAACAGACTACATTTC
CATTTATTTGTGCTGTGAGTCGGAAGTGACGCTCCGAAAAATGGGTCCCG
CAGAGCAAATAGATGCGCGCGTCGATTTTGGCTTGTTTGTTGCGTCTTGT
TCGGAGGAGTACGGCATGGAGAGAAAGGTGTGTGTCGGGCGTCGCTTCAA
AAGCAGCGGTCAGGCTATGGGGTTTCGAAGGCATATTCGTCGCAATCGAC
TGCATTCGCCTACGGCAGGCTTGTATAACAGAGAGAAAGATGAGCTGGTT
GTCGGCGCTCATCTGGTTGCTCCTGAAGTGCAGCACTCCAGACTGCCATC
CGAACTGCCGTCCGAGCTGACCACGCAACTGGGCTCCGCGTCGCTTACCG
GCGACGATTTTCGCAGCGAGAGCCCACTTTCGCCATCCCCCACACAGCTG
GCGGGAAGTCGTATGACTACAATGGAAACGGAACCATCTCCAATACTAAC
GTCCACCTCAAGAGTGTCAACATAG

protein sequence of Gchil5366.t1

>Gchil5366.t1 ID=Gchil5366.t1|Name=Gchil5366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=625bp
MASPRPAARSPSANTLRRLLHPPMRDMRDVTLIPAKSPGRTIRAHRFVLA
AASPVFRASLAADPSNNVLTLAHADVDALDAALQYVYGSDDAINRLPLHA
LWTTLTTCISYAMHLPSKAVQHRIVHTISYTNVFYHWAMAERYNLVPVQL
KCRTLVKRHFVLVSKQPQFVHITSQLLARILRIHDLIVNGEDDVFQALER
WLAYDVQARAEQALHLLRLVRLPTIDDIVLLRVCRSAYFGGHNEFYQLLL
EALIRRTEVRLIHKPRVHAILEHWKSAKGPGPSSRYTRSLSFKPLGANDF
ELFPSPQLSQSHKPQPQPPASPAPTTAAAASERDYNRKEDRTVLFQGNFP
LRWYKSVRFRPRSPTSLLFSVVIPKWSLCRKRFVSESRSFLDHKWSLWVD
PFSSIPSRGTRDSSSLSPQLPSQRRPSKRDSAGAFEGDTYEPADDPTSPV
SPTRSKVLVLDETDYISIYLCCESEVTLRKMGPAEQIDARVDFGLFVASC
SEEYGMERKVCVGRRFKSSGQAMGFRRHIRRNRLHSPTAGLYNREKDELV
VGAHLVAPEVQHSRLPSELPSELTTQLGSASLTGDDFRSESPLSPSPTQL
AGSRMTTMETEPSPILTSTSRVST*

mRNA from alignment at tig00004418_pilon:1288476..1290350+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5366.t1 ID=Gchil5366.t1|Name=Gchil5366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1875bp|location=Sequence derived from alignment at tig00004418_pilon:1288476..1290350+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCCCCGCGCCCCGCCGCGCGCTCGCCTAGCGCAAACACCCTGCG
TCGTCTGCTTCACCCGCCCATGCGCGACATGCGCGACGTCACCCTCATTC
CCGCCAAATCTCCGGGTCGCACCATTCGCGCCCACCGCTTTGTGTTGGCC
GCCGCCTCACCTGTTTTCCGCGCCTCGCTCGCCGCAGACCCCTCCAACAA
CGTCCTCACGCTTGCCCACGCCGATGTCGACGCGCTTGATGCCGCCCTGC
AGTACGTGTACGGAAGCGATGATGCAATCAATCGTCTCCCGTTGCACGCC
CTGTGGACTACGCTCACCACCTGCATCTCCTACGCAATGCACCTTCCCTC
CAAGGCTGTGCAGCACCGCATCGTGCACACCATCAGTTATACAAACGTTT
TCTACCACTGGGCCATGGCGGAGCGCTACAATTTGGTGCCGGTCCAACTC
AAATGTCGAACGCTTGTCAAGCGTCACTTCGTGCTCGTGTCCAAGCAGCC
CCAATTTGTGCACATCACCTCTCAGCTGTTGGCCCGCATTCTACGCATAC
ACGATTTGATCGTCAACGGCGAAGACGACGTCTTCCAGGCGCTTGAGCGT
TGGCTCGCCTACGACGTTCAAGCCCGCGCCGAGCAAGCCCTCCATCTGTT
GCGACTCGTCCGTCTCCCAACCATCGACGACATTGTGTTGCTGCGCGTTT
GTCGCAGCGCCTATTTTGGCGGTCACAATGAGTTTTATCAACTCTTGCTT
GAGGCCCTCATCCGAAGAACCGAGGTCCGCCTCATTCACAAACCCCGCGT
GCACGCCATTCTCGAGCATTGGAAATCGGCCAAGGGGCCTGGCCCGTCTT
CGCGCTACACGCGCAGTCTGTCCTTCAAGCCGCTGGGCGCAAACGACTTT
GAGCTTTTCCCTTCCCCACAACTGTCGCAATCGCACAAAccgcaacctca
gccccccgcctcccctgcgcccaccactgccgccgccgcctccgAGCGCG
ATTACAACCGCAAGGAGGACCGTACCGTGCTGTTTCAGGGCAATTTCCCC
CTGCGTTGGTACAAGAGCGTGCGCTTTCGCCCGAGATCGCCTACTTCGCT
CTTGTTCTCCGTTGTCATTCCCAAGTGGTCCCTGTGTCGAAAGCGCTTTG
TTTCCGAGTCAAGAAGCTTTCTCGATCACAAGTGGTCGCTTTGGGTCGAC
CCGTTTTCATCCATTCCTTCGCGTGGTACGCGCGACTCGTCGTCGCTGTC
CCCGCAACTGCCATCGCAACGGAGGCCATCAAAACGCGACAGTGCAGGTG
CGTTCGAGGGAGACACATACGAGCCAGCTGACGATCCTACCTCGCCCGTG
TCGCCCACTCGCTCAAAAGTGCTTGTACTCGACGAAACAGACTACATTTC
CATTTATTTGTGCTGTGAGTCGGAAGTGACGCTCCGAAAAATGGGTCCCG
CAGAGCAAATAGATGCGCGCGTCGATTTTGGCTTGTTTGTTGCGTCTTGT
TCGGAGGAGTACGGCATGGAGAGAAAGGTGTGTGTCGGGCGTCGCTTCAA
AAGCAGCGGTCAGGCTATGGGGTTTCGAAGGCATATTCGTCGCAATCGAC
TGCATTCGCCTACGGCAGGCTTGTATAACAGAGAGAAAGATGAGCTGGTT
GTCGGCGCTCATCTGGTTGCTCCTGAAGTGCAGCACTCCAGACTGCCATC
CGAACTGCCGTCCGAGCTGACCACGCAACTGGGCTCCGCGTCGCTTACCG
GCGACGATTTTCGCAGCGAGAGCCCACTTTCGCCATCCCCCACACAGCTG
GCGGGAAGTCGTATGACTACAATGGAAACGGAACCATCTCCAATACTAAC
GTCCACCTCAAGAGTGTCAACATAG

Coding sequence (CDS) from alignment at tig00004418_pilon:1288476..1290350+

>Gchil5366.t1 ID=Gchil5366.t1|Name=Gchil5366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1875bp|location=Sequence derived from alignment at tig00004418_pilon:1288476..1290350+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCCCCGCGCCCCGCCGCGCGCTCGCCTAGCGCAAACACCCTGCG
TCGTCTGCTTCACCCGCCCATGCGCGACATGCGCGACGTCACCCTCATTC
CCGCCAAATCTCCGGGTCGCACCATTCGCGCCCACCGCTTTGTGTTGGCC
GCCGCCTCACCTGTTTTCCGCGCCTCGCTCGCCGCAGACCCCTCCAACAA
CGTCCTCACGCTTGCCCACGCCGATGTCGACGCGCTTGATGCCGCCCTGC
AGTACGTGTACGGAAGCGATGATGCAATCAATCGTCTCCCGTTGCACGCC
CTGTGGACTACGCTCACCACCTGCATCTCCTACGCAATGCACCTTCCCTC
CAAGGCTGTGCAGCACCGCATCGTGCACACCATCAGTTATACAAACGTTT
TCTACCACTGGGCCATGGCGGAGCGCTACAATTTGGTGCCGGTCCAACTC
AAATGTCGAACGCTTGTCAAGCGTCACTTCGTGCTCGTGTCCAAGCAGCC
CCAATTTGTGCACATCACCTCTCAGCTGTTGGCCCGCATTCTACGCATAC
ACGATTTGATCGTCAACGGCGAAGACGACGTCTTCCAGGCGCTTGAGCGT
TGGCTCGCCTACGACGTTCAAGCCCGCGCCGAGCAAGCCCTCCATCTGTT
GCGACTCGTCCGTCTCCCAACCATCGACGACATTGTGTTGCTGCGCGTTT
GTCGCAGCGCCTATTTTGGCGGTCACAATGAGTTTTATCAACTCTTGCTT
GAGGCCCTCATCCGAAGAACCGAGGTCCGCCTCATTCACAAACCCCGCGT
GCACGCCATTCTCGAGCATTGGAAATCGGCCAAGGGGCCTGGCCCGTCTT
CGCGCTACACGCGCAGTCTGTCCTTCAAGCCGCTGGGCGCAAACGACTTT
GAGCTTTTCCCTTCCCCACAACTGTCGCAATCGCACAAAccgcaacctca
gccccccgcctcccctgcgcccaccactgccgccgccgcctccgAGCGCG
ATTACAACCGCAAGGAGGACCGTACCGTGCTGTTTCAGGGCAATTTCCCC
CTGCGTTGGTACAAGAGCGTGCGCTTTCGCCCGAGATCGCCTACTTCGCT
CTTGTTCTCCGTTGTCATTCCCAAGTGGTCCCTGTGTCGAAAGCGCTTTG
TTTCCGAGTCAAGAAGCTTTCTCGATCACAAGTGGTCGCTTTGGGTCGAC
CCGTTTTCATCCATTCCTTCGCGTGGTACGCGCGACTCGTCGTCGCTGTC
CCCGCAACTGCCATCGCAACGGAGGCCATCAAAACGCGACAGTGCAGGTG
CGTTCGAGGGAGACACATACGAGCCAGCTGACGATCCTACCTCGCCCGTG
TCGCCCACTCGCTCAAAAGTGCTTGTACTCGACGAAACAGACTACATTTC
CATTTATTTGTGCTGTGAGTCGGAAGTGACGCTCCGAAAAATGGGTCCCG
CAGAGCAAATAGATGCGCGCGTCGATTTTGGCTTGTTTGTTGCGTCTTGT
TCGGAGGAGTACGGCATGGAGAGAAAGGTGTGTGTCGGGCGTCGCTTCAA
AAGCAGCGGTCAGGCTATGGGGTTTCGAAGGCATATTCGTCGCAATCGAC
TGCATTCGCCTACGGCAGGCTTGTATAACAGAGAGAAAGATGAGCTGGTT
GTCGGCGCTCATCTGGTTGCTCCTGAAGTGCAGCACTCCAGACTGCCATC
CGAACTGCCGTCCGAGCTGACCACGCAACTGGGCTCCGCGTCGCTTACCG
GCGACGATTTTCGCAGCGAGAGCCCACTTTCGCCATCCCCCACACAGCTG
GCGGGAAGTCGTATGACTACAATGGAAACGGAACCATCTCCAATACTAAC
GTCCACCTCAAGAGTGTCAACATAG