Gchil4564.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4564.t1
Unique Name	Gchil4564.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	813

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004426_pilon	contig	tig00004426_pilon:1153493..1155931 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702978.1
PFAMs	Myb_DNA-binding,RWP-RK
Max annot lvl	2759\|Eukaryota
Evalue	5.05e-11
EggNOG OGs	KOG0724@1\|root,KOG0724@2759\|Eukaryota
Description	ubiquitin modification-dependent histone binding
COG category	K

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4564	Gchil4564	Gracilaria chilensis NLEC103_M9 male	gene	tig00004426_pilon 1153493..1155931 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4564.t1.start1	Gchil4564.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004426_pilon 1153493..1153495 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4564.t1.CDS1	Gchil4564.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004426_pilon 1153493..1155931 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4564.t1.exon1	Gchil4564.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004426_pilon 1153493..1155931 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4564.t1.stop1	Gchil4564.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004426_pilon 1155929..1155931 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4564.t1	Gchil4564.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004426_pilon 1153493..1155931 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004426_pilon:1153493..1155931+
coding sequence from alignment at tig00004426_pilon:1153493..1155931+

mRNA sequence

>Gchil4564.t1 ID=Gchil4564.t1|Name=Gchil4564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=813bp
MADRNAEPSSTSAPDAPSPISKNEAKDEPQYQDASGESSQNNTSQVRISV
LEAIANHQKQRISELERTLEKKRATIQRLSATPPLPHPTIPMVPAAAMPT
VPTIPTSAQVPPAPSSSPQVDPAPTSGGATVSSQAPTPSASQPQPSASTG
ATNHVMTAPMLGFPPHSHVPPYPFMFPPPDPCFAAQYMGVMPPAVLHPAQ
ALNAQLPSQTNPRDKGNDSQEQKQSRYWTPDEHERFLAGMKACGPKNYLQ
ISEYVGTRNAKQVRTHAQKYQKRLEREDAKRRSDMRHGRVSKADPTDSVA
EDAAAAVKAAAAAAICGKVPGTTSAAVKDSDSAGTPAGPSSSSSGKQFHS
SHQHSQGASSGDGSISVNTASVQHADTNGTKNRSAAMAAIAAEAKALGHG
VLPLEAINISSHSYQIASQPTMVNKNTGSVEDEKESKNSRHTRDVDQTAT
RIGCEHSASMDQKGYISKSKQKQYECPETTETSRHEIADLPTAGESMNNN
TRKTCTETSLQGDNGGVGVGKETNKADLLPKEAMDNNTETEEDIVSTGRC
CKDVAKTGQDPLLSRMTEAGNKQDDSEKLTAGSVVHTKLTNTTAKRVNIV
EGMASETDGGMSAVKLEPERIGSCTNLGEKSNARAVSNTVGNEGSGGTRP
AEVTSLDSVEERREGKSHEVAKVDAESKKLHQSQEEKDRAKKGGSTGEVK
RNSDDDRKQSVEKDARRRGHGAHEEGDFEDELKRLATGDEGGTALEVDGN
HNVCGADNKKRVRDAEETGMHKRARKDDGVGRKVESASDRDGGTRRPSET
NGGTSTAATKLT*

spliced messenger RNA

>Gchil4564.t1 ID=Gchil4564.t1|Name=Gchil4564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2439bp|location=Sequence derived from alignment at tig00004426_pilon:1153493..1155931+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACCGTAACGCAGAACCAAGTAGCACTTCTGCACCAGATGCCCC
GTCTCCAATTTCTAAAAATGAGGCAAAAGATGAACCGCAATACCAAGATG
CCTCCGGTGAATCTTCTCAAAACAACACGTCGCAAGTACGCATTTCCGTC
CTGGAGGCCATAGCAAACCACCAGAAGCAACGTATTTCCGAGTTGGAGCG
CACCTTGGAGAAGAAAAGAGCCACCATACAGCGTCTCTCCGCCACCCCAC
CACTCCCTCATCCTACAATCCCGATGGTTCCCGCTGCTGCAATGCCTACA
GTGCCGACAATCCCAACAAGTGCTCAAGTTCCTCCAGCTCCATCAAGCTC
CCCACAGGTAGACCCAGCGCCCACCTCGGGGGGTGCAACAGTAAGCTCAC
AAGCACCAACCCCGTCAGCCTCTCAACCGCAGCCCTCGGCATCGACCGGT
GCAACCAATCATGTCATGACAGCGCCTATGCTCGGGTTTCCTCCACATTC
CCATGTTCCTCCATATCCTTTTATGTTTCCCCCTCCTGATCCGTGTTTTG
CCGCTCAATACATGGGGGTTATGCCTCCTGCAGTCCTCCATCCTGCCCAA
GCCCTCAATGCACAACTTCCAAGCCAAACTAATCCACGAGATAAGGGAAA
CGACAGTCAAGAACAGAAGCAAAGCAGATATTGGACTCCCGATGAACATG
AGCGATTTCTGGCCGGCATGAAAGCATGTGGACCAAAAAATTACCTGCAG
ATATCTGAGTACGTCGGCACTCGAAATGCTAAACAAGTTCGCACGCACGC
ACAAAAGTATCAAAAGAGGTTGGAACGCGAGGATGCGAAGCGACGAAGTG
ATATGCGCCACGGAAGGGTAAGTAAAGCTGACCCCACGGACTCTGTCgca
gaagatgcagcagcagcagtcaaggcagctgctgctgcagcaATATGCGG
AAAGGTTCCTGGTACCACTTCGGCAGCTGTGAAAGATTCGGACTCAGCAG
GAACGCCCGCTGGTCCAAGTAGCTCTTCGAGTGGGAAGCAATTCCATTCA
TCACATCAGCACTCGCAGGGTGCCAGTAGTGGTGATGGAAGCATAAGCGT
GAATACGGCTTCGGTGCAGCACGCAGACACTAACGGGACGAAGAATCGCT
CAGCAGCAATGGCTGCTATAGCGGCAGAAGCAAAAGCGCTTGGACATGGG
GTATTACCTCTGGAGGCAATAAATATTTCATCCCACTCATATCAAATCGC
TTCACAGCCGACCATGGTGAACAAGAACACCGGAAGCGTAGAAGACGAGA
AAGAATCGAAAAACAGCAGACACACAAGGGACGTGGATCAAACTGCTACG
CGTATTGGTTGTGAACACTCAGCATCCATGGATCAAAAGGGCTACATATC
AAAATCAAAGCAGAAGCAATACGAGTGTCCTGAAACCACGGAGACTTCTC
GCCATGAAATTGCGGATCTTCCAACAGCTGGCGAGAGTATGAACAACAAC
ACACGAAAAACTTGCACAGAAACAAGTCTTCAAGGCGATAACGGTGGCGT
TGGCGTTGGAAAAGAGACGAACAAAGCCGATTTGCTACCGAAAGAGGCGA
TGGACAACAACACGGAGACAGAGGAAGATATTGTGAGCACCGGTAGATGT
TGCAAGGATGTAGCGAAGACAGGACAAGATCCGCTTCTATCGCGGATGAC
CGAAGCAGGAAACAAACAGGACGATTCTGAAAAGCTAACAGCTGGTTCTG
TTGTACATACAAAACTAACAAATACAACTGCAAAACGTGTGAACATCGTG
GAGGGGATGGCTTCCGAAACGGATGGCGGGATGAGTGCGGTGAAGCTTGA
ACCAGAACGAATTGGTAGTTGTACTAACTTAGGAGAGAAAAGCAATGCAC
GAGCTGTTAGCAATACAGTTGGTAACGAAGGCAGCGGCGGCACTAGACCG
GCGGAAGTGACATCACTCGATTCCGTCGAAGAACGAAGGGAAGGGAAGTC
TCACGAGGTGGCCAAAGTAGATGCGGAATCAAAGAAGTTGCATCAAAGCC
AGGAAGAGAAAGACAGGGCTAAGAAAGGAGGCAGTACCGGAGAAGTGAAG
CGGAATTCAGATGACGACAGGAAACAGAGCGTTGAAAAAGATGCACGACG
GCGAGGTCACGGAGCACATGAAGAGGGCGACTTTGAAGACGAGCTAAAAA
GGCTTGCCACAGGGGACGAAGGAGGCACGGCTTTAGAGGTAGATGGGAAC
CACAATGTGTGTGGGGCAGATAATAAAAAACGCGTTCGAGACGCAGAGGA
AACTGGGATGCACAAGCGGGCGAGGAAGGACGATGGGGTCGGGCGGAAGG
TGGAGTCCGCGTCCGACAGGGACGGTGGCACTCGGCGGCCTTCGGAGACA
AATGGTGGAACCAGCACAGCGGCGACGAAGCTAACATAG

protein sequence of Gchil4564.t1

>Gchil4564.t1 ID=Gchil4564.t1|Name=Gchil4564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=813bp
MADRNAEPSSTSAPDAPSPISKNEAKDEPQYQDASGESSQNNTSQVRISV
LEAIANHQKQRISELERTLEKKRATIQRLSATPPLPHPTIPMVPAAAMPT
VPTIPTSAQVPPAPSSSPQVDPAPTSGGATVSSQAPTPSASQPQPSASTG
ATNHVMTAPMLGFPPHSHVPPYPFMFPPPDPCFAAQYMGVMPPAVLHPAQ
ALNAQLPSQTNPRDKGNDSQEQKQSRYWTPDEHERFLAGMKACGPKNYLQ
ISEYVGTRNAKQVRTHAQKYQKRLEREDAKRRSDMRHGRVSKADPTDSVA
EDAAAAVKAAAAAAICGKVPGTTSAAVKDSDSAGTPAGPSSSSSGKQFHS
SHQHSQGASSGDGSISVNTASVQHADTNGTKNRSAAMAAIAAEAKALGHG
VLPLEAINISSHSYQIASQPTMVNKNTGSVEDEKESKNSRHTRDVDQTAT
RIGCEHSASMDQKGYISKSKQKQYECPETTETSRHEIADLPTAGESMNNN
TRKTCTETSLQGDNGGVGVGKETNKADLLPKEAMDNNTETEEDIVSTGRC
CKDVAKTGQDPLLSRMTEAGNKQDDSEKLTAGSVVHTKLTNTTAKRVNIV
EGMASETDGGMSAVKLEPERIGSCTNLGEKSNARAVSNTVGNEGSGGTRP
AEVTSLDSVEERREGKSHEVAKVDAESKKLHQSQEEKDRAKKGGSTGEVK
RNSDDDRKQSVEKDARRRGHGAHEEGDFEDELKRLATGDEGGTALEVDGN
HNVCGADNKKRVRDAEETGMHKRARKDDGVGRKVESASDRDGGTRRPSET
NGGTSTAATKLT*

mRNA from alignment at tig00004426_pilon:1153493..1155931+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4564.t1 ID=Gchil4564.t1|Name=Gchil4564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2439bp|location=Sequence derived from alignment at tig00004426_pilon:1153493..1155931+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGACCGTAACGCAGAACCAAGTAGCACTTCTGCACCAGATGCCCC
GTCTCCAATTTCTAAAAATGAGGCAAAAGATGAACCGCAATACCAAGATG
CCTCCGGTGAATCTTCTCAAAACAACACGTCGCAAGTACGCATTTCCGTC
CTGGAGGCCATAGCAAACCACCAGAAGCAACGTATTTCCGAGTTGGAGCG
CACCTTGGAGAAGAAAAGAGCCACCATACAGCGTCTCTCCGCCACCCCAC
CACTCCCTCATCCTACAATCCCGATGGTTCCCGCTGCTGCAATGCCTACA
GTGCCGACAATCCCAACAAGTGCTCAAGTTCCTCCAGCTCCATCAAGCTC
CCCACAGGTAGACCCAGCGCCCACCTCGGGGGGTGCAACAGTAAGCTCAC
AAGCACCAACCCCGTCAGCCTCTCAACCGCAGCCCTCGGCATCGACCGGT
GCAACCAATCATGTCATGACAGCGCCTATGCTCGGGTTTCCTCCACATTC
CCATGTTCCTCCATATCCTTTTATGTTTCCCCCTCCTGATCCGTGTTTTG
CCGCTCAATACATGGGGGTTATGCCTCCTGCAGTCCTCCATCCTGCCCAA
GCCCTCAATGCACAACTTCCAAGCCAAACTAATCCACGAGATAAGGGAAA
CGACAGTCAAGAACAGAAGCAAAGCAGATATTGGACTCCCGATGAACATG
AGCGATTTCTGGCCGGCATGAAAGCATGTGGACCAAAAAATTACCTGCAG
ATATCTGAGTACGTCGGCACTCGAAATGCTAAACAAGTTCGCACGCACGC
ACAAAAGTATCAAAAGAGGTTGGAACGCGAGGATGCGAAGCGACGAAGTG
ATATGCGCCACGGAAGGGTAAGTAAAGCTGACCCCACGGACTCTGTCgca
gaagatgcagcagcagcagtcaaggcagctgctgctgcagcaATATGCGG
AAAGGTTCCTGGTACCACTTCGGCAGCTGTGAAAGATTCGGACTCAGCAG
GAACGCCCGCTGGTCCAAGTAGCTCTTCGAGTGGGAAGCAATTCCATTCA
TCACATCAGCACTCGCAGGGTGCCAGTAGTGGTGATGGAAGCATAAGCGT
GAATACGGCTTCGGTGCAGCACGCAGACACTAACGGGACGAAGAATCGCT
CAGCAGCAATGGCTGCTATAGCGGCAGAAGCAAAAGCGCTTGGACATGGG
GTATTACCTCTGGAGGCAATAAATATTTCATCCCACTCATATCAAATCGC
TTCACAGCCGACCATGGTGAACAAGAACACCGGAAGCGTAGAAGACGAGA
AAGAATCGAAAAACAGCAGACACACAAGGGACGTGGATCAAACTGCTACG
CGTATTGGTTGTGAACACTCAGCATCCATGGATCAAAAGGGCTACATATC
AAAATCAAAGCAGAAGCAATACGAGTGTCCTGAAACCACGGAGACTTCTC
GCCATGAAATTGCGGATCTTCCAACAGCTGGCGAGAGTATGAACAACAAC
ACACGAAAAACTTGCACAGAAACAAGTCTTCAAGGCGATAACGGTGGCGT
TGGCGTTGGAAAAGAGACGAACAAAGCCGATTTGCTACCGAAAGAGGCGA
TGGACAACAACACGGAGACAGAGGAAGATATTGTGAGCACCGGTAGATGT
TGCAAGGATGTAGCGAAGACAGGACAAGATCCGCTTCTATCGCGGATGAC
CGAAGCAGGAAACAAACAGGACGATTCTGAAAAGCTAACAGCTGGTTCTG
TTGTACATACAAAACTAACAAATACAACTGCAAAACGTGTGAACATCGTG
GAGGGGATGGCTTCCGAAACGGATGGCGGGATGAGTGCGGTGAAGCTTGA
ACCAGAACGAATTGGTAGTTGTACTAACTTAGGAGAGAAAAGCAATGCAC
GAGCTGTTAGCAATACAGTTGGTAACGAAGGCAGCGGCGGCACTAGACCG
GCGGAAGTGACATCACTCGATTCCGTCGAAGAACGAAGGGAAGGGAAGTC
TCACGAGGTGGCCAAAGTAGATGCGGAATCAAAGAAGTTGCATCAAAGCC
AGGAAGAGAAAGACAGGGCTAAGAAAGGAGGCAGTACCGGAGAAGTGAAG
CGGAATTCAGATGACGACAGGAAACAGAGCGTTGAAAAAGATGCACGACG
GCGAGGTCACGGAGCACATGAAGAGGGCGACTTTGAAGACGAGCTAAAAA
GGCTTGCCACAGGGGACGAAGGAGGCACGGCTTTAGAGGTAGATGGGAAC
CACAATGTGTGTGGGGCAGATAATAAAAAACGCGTTCGAGACGCAGAGGA
AACTGGGATGCACAAGCGGGCGAGGAAGGACGATGGGGTCGGGCGGAAGG
TGGAGTCCGCGTCCGACAGGGACGGTGGCACTCGGCGGCCTTCGGAGACA
AATGGTGGAACCAGCACAGCGGCGACGAAGCTAACATAG

Coding sequence (CDS) from alignment at tig00004426_pilon:1153493..1155931+

>Gchil4564.t1 ID=Gchil4564.t1|Name=Gchil4564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2439bp|location=Sequence derived from alignment at tig00004426_pilon:1153493..1155931+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGACCGTAACGCAGAACCAAGTAGCACTTCTGCACCAGATGCCCC
GTCTCCAATTTCTAAAAATGAGGCAAAAGATGAACCGCAATACCAAGATG
CCTCCGGTGAATCTTCTCAAAACAACACGTCGCAAGTACGCATTTCCGTC
CTGGAGGCCATAGCAAACCACCAGAAGCAACGTATTTCCGAGTTGGAGCG
CACCTTGGAGAAGAAAAGAGCCACCATACAGCGTCTCTCCGCCACCCCAC
CACTCCCTCATCCTACAATCCCGATGGTTCCCGCTGCTGCAATGCCTACA
GTGCCGACAATCCCAACAAGTGCTCAAGTTCCTCCAGCTCCATCAAGCTC
CCCACAGGTAGACCCAGCGCCCACCTCGGGGGGTGCAACAGTAAGCTCAC
AAGCACCAACCCCGTCAGCCTCTCAACCGCAGCCCTCGGCATCGACCGGT
GCAACCAATCATGTCATGACAGCGCCTATGCTCGGGTTTCCTCCACATTC
CCATGTTCCTCCATATCCTTTTATGTTTCCCCCTCCTGATCCGTGTTTTG
CCGCTCAATACATGGGGGTTATGCCTCCTGCAGTCCTCCATCCTGCCCAA
GCCCTCAATGCACAACTTCCAAGCCAAACTAATCCACGAGATAAGGGAAA
CGACAGTCAAGAACAGAAGCAAAGCAGATATTGGACTCCCGATGAACATG
AGCGATTTCTGGCCGGCATGAAAGCATGTGGACCAAAAAATTACCTGCAG
ATATCTGAGTACGTCGGCACTCGAAATGCTAAACAAGTTCGCACGCACGC
ACAAAAGTATCAAAAGAGGTTGGAACGCGAGGATGCGAAGCGACGAAGTG
ATATGCGCCACGGAAGGGTAAGTAAAGCTGACCCCACGGACTCTGTCgca
gaagatgcagcagcagcagtcaaggcagctgctgctgcagcaATATGCGG
AAAGGTTCCTGGTACCACTTCGGCAGCTGTGAAAGATTCGGACTCAGCAG
GAACGCCCGCTGGTCCAAGTAGCTCTTCGAGTGGGAAGCAATTCCATTCA
TCACATCAGCACTCGCAGGGTGCCAGTAGTGGTGATGGAAGCATAAGCGT
GAATACGGCTTCGGTGCAGCACGCAGACACTAACGGGACGAAGAATCGCT
CAGCAGCAATGGCTGCTATAGCGGCAGAAGCAAAAGCGCTTGGACATGGG
GTATTACCTCTGGAGGCAATAAATATTTCATCCCACTCATATCAAATCGC
TTCACAGCCGACCATGGTGAACAAGAACACCGGAAGCGTAGAAGACGAGA
AAGAATCGAAAAACAGCAGACACACAAGGGACGTGGATCAAACTGCTACG
CGTATTGGTTGTGAACACTCAGCATCCATGGATCAAAAGGGCTACATATC
AAAATCAAAGCAGAAGCAATACGAGTGTCCTGAAACCACGGAGACTTCTC
GCCATGAAATTGCGGATCTTCCAACAGCTGGCGAGAGTATGAACAACAAC
ACACGAAAAACTTGCACAGAAACAAGTCTTCAAGGCGATAACGGTGGCGT
TGGCGTTGGAAAAGAGACGAACAAAGCCGATTTGCTACCGAAAGAGGCGA
TGGACAACAACACGGAGACAGAGGAAGATATTGTGAGCACCGGTAGATGT
TGCAAGGATGTAGCGAAGACAGGACAAGATCCGCTTCTATCGCGGATGAC
CGAAGCAGGAAACAAACAGGACGATTCTGAAAAGCTAACAGCTGGTTCTG
TTGTACATACAAAACTAACAAATACAACTGCAAAACGTGTGAACATCGTG
GAGGGGATGGCTTCCGAAACGGATGGCGGGATGAGTGCGGTGAAGCTTGA
ACCAGAACGAATTGGTAGTTGTACTAACTTAGGAGAGAAAAGCAATGCAC
GAGCTGTTAGCAATACAGTTGGTAACGAAGGCAGCGGCGGCACTAGACCG
GCGGAAGTGACATCACTCGATTCCGTCGAAGAACGAAGGGAAGGGAAGTC
TCACGAGGTGGCCAAAGTAGATGCGGAATCAAAGAAGTTGCATCAAAGCC
AGGAAGAGAAAGACAGGGCTAAGAAAGGAGGCAGTACCGGAGAAGTGAAG
CGGAATTCAGATGACGACAGGAAACAGAGCGTTGAAAAAGATGCACGACG
GCGAGGTCACGGAGCACATGAAGAGGGCGACTTTGAAGACGAGCTAAAAA
GGCTTGCCACAGGGGACGAAGGAGGCACGGCTTTAGAGGTAGATGGGAAC
CACAATGTGTGTGGGGCAGATAATAAAAAACGCGTTCGAGACGCAGAGGA
AACTGGGATGCACAAGCGGGCGAGGAAGGACGATGGGGTCGGGCGGAAGG
TGGAGTCCGCGTCCGACAGGGACGGTGGCACTCGGCGGCCTTCGGAGACA
AATGGTGGAACCAGCACAGCGGCGACGAAGCTAACATAG