Gchil4504.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4504.t1
Unique NameGchil4504.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length321
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:573999..575776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1069533.Sinf_1083
Preferred namemmuM
PFAMsS-methyl_trans
Max annot lvl91061|Bacilli
KEGG rclassRC00003,RC00035
KEGG koko:K00547
KEGG ReactionR00650
KEGG Pathwayko00270,ko01100,ko01110,map00270,map01100,map01110
Evalue7.02e-36
EggNOG OGsCOG2040@1|root,COG2040@2|Bacteria,1UHQ5@1239|Firmicutes,4HAS6@91061|Bacilli
EC2.1.1.10
DescriptionHomocysteine
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4504Gchil4504Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 573999..575776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4504.t1Gchil4504.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 573999..575776 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4504.t1.stop1Gchil4504.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 573999..574001 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4504.t1.CDS1Gchil4504.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 573999..574220 -
Gchil4504.t1.CDS2Gchil4504.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 574965..575555 -
Gchil4504.t1.CDS3Gchil4504.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 575627..575776 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4504.t1.exon1Gchil4504.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 573999..574220 -
Gchil4504.t1.exon2Gchil4504.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 574965..575555 -
Gchil4504.t1.exon3Gchil4504.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 575627..575776 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4504.t1.intron1Gchil4504.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 574221..574964 -
Gchil4504.t1.intron2Gchil4504.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 575556..575626 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4504.t1.start1Gchil4504.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 575774..575776 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4504.t1 ID=Gchil4504.t1|Name=Gchil4504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=321bp
MINKWYQWLDSEPGSVILDGGLGFILKERGNDLRDSRLWSGKLLLTNPNE
LKEVAKEWLACGADIISTATYQVNTKLLQDEFNLSPDEANKTWRLSWTLL
DDARQDFWKQLPEKQKQSRRYPVIAVSCGPYSAVLPNVSEYSGKYHGVTT
ADIRDFHLDRLRSLRAVVLETCTNSDPPNIVCFETIGNTAEAVIIAQIMG
AEEFYHIPYWISFQCRDALHISCRDLLSEAVKTTLVHCAKSNLVGIGSFA
QLLPIFLLTIHGFIEVLLSALRASLQILIPRKTPEVEITERTTTSLRRAS
TSATDKELALPENIQDSLIH*
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spliced messenger RNA

>Gchil4504.t1 ID=Gchil4504.t1|Name=Gchil4504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=963bp|location=Sequence derived from alignment at tig00004426_pilon:573999..575776- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAACAAATGGTACCAGTGGCTTGACTCTGAGCCAGGTTCCGTCAT
CCTAGACGGTGGTCTAGGTTTTATTCTCAAGGAAAGAGGAAATGATCTTC
GCGATAGTCGGCTTTGGAGTGGTAAACTGCTCCTGACAAATCCGAATGAG
CTAAAAGAAGTAGCGAAAGAATGGCTGGCGTGTGGTGCAGATATTATCTC
GACAGCGACATACCAAGTAAACACTAAATTGCTTCAAGATGAGTTTAACC
TCAGTCCCGATGAAGCTAATAAAACTTGGCGCTTGTCTTGGACTCTGCTC
GATGATGCTAGACAAGATTTTTGGAAACAACTTCCAGAGAAACAAAAACA
GAGTCGCAGGTACCCAGTCATAGCTGTGTCTTGTGGTCCTTATAGCGCCG
TTTTGCCCAATGTCAGTGAGTATTCAGGAAAGTACCACGGAGTGACAACT
GCTGATATTCGAGATTTTCATCTAGATCGCTTGCGGAGTCTGAGAGCTGT
CGTTCTCGAAACTTGTACCAATTCGGATCCTCCGAACATTGTCTGTTTTG
AAACCATTGGTAACACAGCGGAAGCTGTGATTATTGCACAAATAATGGGA
GCAGAAGAGTTCTATCATATTCCGTATTGGATAAGTTTTCAGTGCCGGGA
TGCTCTTCACATTTCATGCCGAGATTTACTGTCTGAAGCTGTCAAGACCA
CGCTAGTTCATTGTGCGAAATCTAATTTGGTCGGGATTGGATCGTTTGCG
CAATTGCTTCCTATCTTCCTCTTGACGATCCATGGATTCATTGAGGTCTT
GCTCAGTGCCTTAAGAGCCAGTCTGCAGATACTAATCCCCAGAAAGACCC
CTGAAGTGGAGATTACAGAGCGCACGACCACAAGTCTCCGACGTGCTTCT
ACTTCTGCAACAGACAAAGAACTTGCACTCCCCGAAAACATACAGGACTC
TTTAATTCATTGA
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protein sequence of Gchil4504.t1

>Gchil4504.t1 ID=Gchil4504.t1|Name=Gchil4504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=321bp
MINKWYQWLDSEPGSVILDGGLGFILKERGNDLRDSRLWSGKLLLTNPNE
LKEVAKEWLACGADIISTATYQVNTKLLQDEFNLSPDEANKTWRLSWTLL
DDARQDFWKQLPEKQKQSRRYPVIAVSCGPYSAVLPNVSEYSGKYHGVTT
ADIRDFHLDRLRSLRAVVLETCTNSDPPNIVCFETIGNTAEAVIIAQIMG
AEEFYHIPYWISFQCRDALHISCRDLLSEAVKTTLVHCAKSNLVGIGSFA
QLLPIFLLTIHGFIEVLLSALRASLQILIPRKTPEVEITERTTTSLRRAS
TSATDKELALPENIQDSLIH*
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mRNA from alignment at tig00004426_pilon:573999..575776-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4504.t1 ID=Gchil4504.t1|Name=Gchil4504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1778bp|location=Sequence derived from alignment at tig00004426_pilon:573999..575776- (Gracilaria chilensis NLEC103_M9 male)
ATGATCAACAAATGGTACCAGTGGCTTGACTCTGAGCCAGGTTCCGTCAT
CCTAGACGGTGGTCTAGGTTTTATTCTCAAGGAAAGAGGAAATGATCTTC
GCGATAGTCGGCTTTGGAGTGGTAAACTGCTCCTGACAAATCCGAATGAG
GTAAGCTTTTTCTAGAGGATTCTATCACTACACAATACGTTTTTGTTTTC
TTTTAACTAGACCAGTTGTAGCTAAAAGAAGTAGCGAAAGAATGGCTGGC
GTGTGGTGCAGATATTATCTCGACAGCGACATACCAAGTAAACACTAAAT
TGCTTCAAGATGAGTTTAACCTCAGTCCCGATGAAGCTAATAAAACTTGG
CGCTTGTCTTGGACTCTGCTCGATGATGCTAGACAAGATTTTTGGAAACA
ACTTCCAGAGAAACAAAAACAGAGTCGCAGGTACCCAGTCATAGCTGTGT
CTTGTGGTCCTTATAGCGCCGTTTTGCCCAATGTCAGTGAGTATTCAGGA
AAGTACCACGGAGTGACAACTGCTGATATTCGAGATTTTCATCTAGATCG
CTTGCGGAGTCTGAGAGCTGTCGTTCTCGAAACTTGTACCAATTCGGATC
CTCCGAACATTGTCTGTTTTGAAACCATTGGTAACACAGCGGAAGCTGTG
ATTATTGCACAAATAATGGGAGCAGAAGAGTTCTATCATATTCCGTATTG
GATAAGTTTTCAGTGCCGGGATGCTCTTCACATTTCATGCCGAGATTTAC
TGTCTGAAGCTGTCAAGACCACGCTAGTTCATTGTGCGAAATCTAATTTG
GTCGGGATTGGAGTAAACTGCTTCGACGCATTCAACCTTGCTTCTCTACA
AGGGATACTTGAAGGTACCATCTCAAGTCATTTGTCAAATAATCGGGCAG
GTCAATGGCGGGTGGACACTGTCTGTTATCCGAACAGCGGTGAAATTTGG
GCAGCCGGTGGATGGTATTGGAGACGGAACAAGCAGTTGACTTGTTCTGA
GTGGGCACAATCAACTTGCTCTGTGGGGAGTAAAATTGTAGGAGGATGCT
GCCGCATAGGACCTAGTTATATTCGTGCCCTTCGGGAGGAGCGAACACGC
GAGATAGAGCGCTGAAGACCTGGACGAGGAACAAATGCAGGGGTTCTTGC
TTCCAGAGCTTCGTGCCTTCGCTTGTACTCCGTTTCCCTTTCTAACGACA
AAGAGCACTGACGTGTCTACTTGGGATAAGTTGACCCACGCTACCAACAG
TATCCTACCTTAATTGTCACACATTACCCTATGTATGCCTGATGAAACCT
TTTCACGAAACGTTGGAGAATTTCAGACCCGTGTACACAAGAATGGAGCT
ACCCATAGGCCTTGGACAAAAGTACCCCCAATAAGATCATAGTAGTATCC
CGCCCACGTACTTCGAATTCCTTTTCTCCCTTACAAGTTGATGTAGCAAG
CAAGCAAGCATTGAAACGCGAATTGGGTCAGTGATAGTGGTTTTCGGAGA
TTATGCATGTTTTTAGCAGTTTCATCCATCTAATTTTAGTCCAGGATACA
ATACAGTCGTTTGCGCAATTGCTTCCTATCTTCCTCTTGACGATCCATGG
ATTCATTGAGGTCTTGCTCAGTGCCTTAAGAGCCAGTCTGCAGATACTAA
TCCCCAGAAAGACCCCTGAAGTGGAGATTACAGAGCGCACGACCACAAGT
CTCCGACGTGCTTCTACTTCTGCAACAGACAAAGAACTTGCACTCCCCGA
AAACATACAGGACTCTTTAATTCATTGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:573999..575776-

>Gchil4504.t1 ID=Gchil4504.t1|Name=Gchil4504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=963bp|location=Sequence derived from alignment at tig00004426_pilon:573999..575776- (Gracilaria chilensis NLEC103_M9 male)
ATGATCAACAAATGGTACCAGTGGCTTGACTCTGAGCCAGGTTCCGTCAT
CCTAGACGGTGGTCTAGGTTTTATTCTCAAGGAAAGAGGAAATGATCTTC
GCGATAGTCGGCTTTGGAGTGGTAAACTGCTCCTGACAAATCCGAATGAG
CTAAAAGAAGTAGCGAAAGAATGGCTGGCGTGTGGTGCAGATATTATCTC
GACAGCGACATACCAAGTAAACACTAAATTGCTTCAAGATGAGTTTAACC
TCAGTCCCGATGAAGCTAATAAAACTTGGCGCTTGTCTTGGACTCTGCTC
GATGATGCTAGACAAGATTTTTGGAAACAACTTCCAGAGAAACAAAAACA
GAGTCGCAGGTACCCAGTCATAGCTGTGTCTTGTGGTCCTTATAGCGCCG
TTTTGCCCAATGTCAGTGAGTATTCAGGAAAGTACCACGGAGTGACAACT
GCTGATATTCGAGATTTTCATCTAGATCGCTTGCGGAGTCTGAGAGCTGT
CGTTCTCGAAACTTGTACCAATTCGGATCCTCCGAACATTGTCTGTTTTG
AAACCATTGGTAACACAGCGGAAGCTGTGATTATTGCACAAATAATGGGA
GCAGAAGAGTTCTATCATATTCCGTATTGGATAAGTTTTCAGTGCCGGGA
TGCTCTTCACATTTCATGCCGAGATTTACTGTCTGAAGCTGTCAAGACCA
CGCTAGTTCATTGTGCGAAATCTAATTTGGTCGGGATTGGATCGTTTGCG
CAATTGCTTCCTATCTTCCTCTTGACGATCCATGGATTCATTGAGGTCTT
GCTCAGTGCCTTAAGAGCCAGTCTGCAGATACTAATCCCCAGAAAGACCC
CTGAAGTGGAGATTACAGAGCGCACGACCACAAGTCTCCGACGTGCTTCT
ACTTCTGCAACAGACAAAGAACTTGCACTCCCCGAAAACATACAGGACTC
TTTAATTCATTGA
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