Gchil4455.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4455.t1
Unique NameGchil4455.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:423238..424060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc10g018060.1.1
PFAMsC2
Max annot lvl35493|Streptophyta
Evalue2.21e-05
EggNOG OGsKOG1030@1|root,KOG1030@2759|Eukaryota,37UIN@33090|Viridiplantae,3GIY4@35493|Streptophyta,44SUT@71274|asterids
DescriptionProtein kinase C conserved region 2 (CalB)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4455Gchil4455Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 423238..424060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4455.t1Gchil4455.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 423238..424060 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4455.t1.stop1Gchil4455.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 423238..423240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4455.t1.CDS1Gchil4455.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 423238..423284 -
Gchil4455.t1.CDS2Gchil4455.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 423382..423524 -
Gchil4455.t1.CDS3Gchil4455.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 423744..423862 -
Gchil4455.t1.CDS4Gchil4455.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 423962..424060 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4455.t1.exon1Gchil4455.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 423238..423284 -
Gchil4455.t1.exon2Gchil4455.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 423382..423524 -
Gchil4455.t1.exon3Gchil4455.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 423744..423862 -
Gchil4455.t1.exon4Gchil4455.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 423962..424060 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4455.t1.intron1Gchil4455.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 423285..423381 -
Gchil4455.t1.intron2Gchil4455.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 423525..423743 -
Gchil4455.t1.intron3Gchil4455.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 423863..423961 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4455.t1.start1Gchil4455.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 424058..424060 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4455.t1 ID=Gchil4455.t1|Name=Gchil4455.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=136bp
MVQVEGKISIWIKSGSFNHGSDLYIKVFVDDNDIWSTDEKDGFSPDWDST
VEKHIKGDYEKIVLKLMDEDTCDRDDVIGTVEIPIADLLDDGINDDVQIC
SENGDSVGTVAVNINFEEGDVNMFDLLGSMLHKDD*
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spliced messenger RNA

>Gchil4455.t1 ID=Gchil4455.t1|Name=Gchil4455.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00004426_pilon:423238..424060- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCAAGTCGAGGGAAAGATTAGCATCTGGATCAAATCCGGTAGCTT
CAACCACGGTAGCGATTTGTACATCAAGGTCTTCGTCGATGACAACGACA
TCTGGTCCACCGATGAGAAGGACGGTTTCTCCCCCGATTGGGACTCCACC
GTCGAGAAGCACATCAAGGGCGACTACGAAAAGATCGTCCTCAAGCTAAT
GGACGAGGATACATGTGATCGTGACGACGTCATCGGAACCGTCGAGATTC
CCATCGCCGATCTGCTCGACGACGGTATCAACGATGATGTGCAAATCTGC
AGCGAAAATGGCGACAGCGTTGGAACAGTTGCCGTCAACATCAACTTTGA
AGAGGGAGATGTCAACATGTTCGACCTCCTCGGATCTATGCTCCACAAGG
ACGATTAG
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protein sequence of Gchil4455.t1

>Gchil4455.t1 ID=Gchil4455.t1|Name=Gchil4455.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=136bp
MVQVEGKISIWIKSGSFNHGSDLYIKVFVDDNDIWSTDEKDGFSPDWDST
VEKHIKGDYEKIVLKLMDEDTCDRDDVIGTVEIPIADLLDDGINDDVQIC
SENGDSVGTVAVNINFEEGDVNMFDLLGSMLHKDD*
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mRNA from alignment at tig00004426_pilon:423238..424060-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4455.t1 ID=Gchil4455.t1|Name=Gchil4455.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=823bp|location=Sequence derived from alignment at tig00004426_pilon:423238..424060- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCAAGTCGAGGGAAAGATTAGCATCTGGATCAAATCCGGTAGCTT
CAACCACGGTAGCGATTTGTACATCAAGGTCTTCGTCGATGACAACGACG
TACGTCTTCGTCGCACCCGCCCTCATCTTGCACCCCCCGTGCCGCACCGC
CCGTTTTGCTCACCATTTGTGTCTTGTTTCTGACGCTTTTGCCAACAGAT
CTGGTCCACCGATGAGAAGGACGGTTTCTCCCCCGATTGGGACTCCACCG
TCGAGAAGCACATCAAGGGCGACTACGAAAAGATCGTCCTCAAGCTAATG
GACGAGGATACATGTGAGTTATGCACTTTGACCCTTGCGCCTCACCACGC
ACCACACCAGTGCCTTCTCTAACTCACCTTGCGCGCTTGTCTTTCCACCT
TTCAGTCTCGTAAGTATCATCGAACACACCCAACTAGTTCCCCCGATCCG
GTGCGAGCGCCCACCGTCCACCCGTTCAGCGCGCGTTTCTAACCTATCCA
CGCCCTCTCCTCGCCCTGCGCCTCAATTCTTCACAGTCGTGACGACGTCA
TCGGAACCGTCGAGATTCCCATCGCCGATCTGCTCGACGACGGTATCAAC
GATGATGTGCAAATCTGCAGCGAAAATGGCGACAGCGTTGGAACAGTTGC
CGTCAACATCAACTTTGAAGAGGGAGATGGTACGTCACACATCATTTATT
CACCACATATTCGCAAACTGCGTCTCAACAACATGCGTGTATATGCTAAC
CATAATGTGCTTATGAACGCAACCAGTCAACATGTTCGACCTCCTCGGAT
CTATGCTCCACAAGGACGATTAG
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Coding sequence (CDS) from alignment at tig00004426_pilon:423238..424060-

>Gchil4455.t1 ID=Gchil4455.t1|Name=Gchil4455.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=408bp|location=Sequence derived from alignment at tig00004426_pilon:423238..424060- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCAAGTCGAGGGAAAGATTAGCATCTGGATCAAATCCGGTAGCTT
CAACCACGGTAGCGATTTGTACATCAAGGTCTTCGTCGATGACAACGACA
TCTGGTCCACCGATGAGAAGGACGGTTTCTCCCCCGATTGGGACTCCACC
GTCGAGAAGCACATCAAGGGCGACTACGAAAAGATCGTCCTCAAGCTAAT
GGACGAGGATACATGTGATCGTGACGACGTCATCGGAACCGTCGAGATTC
CCATCGCCGATCTGCTCGACGACGGTATCAACGATGATGTGCAAATCTGC
AGCGAAAATGGCGACAGCGTTGGAACAGTTGCCGTCAACATCAACTTTGA
AGAGGGAGATGTCAACATGTTCGACCTCCTCGGATCTATGCTCCACAAGG
ACGATTAG
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