Gchil4426.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4426.t1
Unique NameGchil4426.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length201
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:262067..262669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173264.KI913949_gene470
PFAMsPolyketide_cyc
Max annot lvl1117|Cyanobacteria
Evalue5.78e-23
EggNOG OGsCOG5637@1|root,COG5637@2|Bacteria,1G53E@1117|Cyanobacteria,1HAJX@1150|Oscillatoriales
DescriptionPFAM Polyketide cyclase dehydrase and lipid transport
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4426Gchil4426Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 262067..262669 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4426.t1.start1Gchil4426.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 262067..262069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4426.t1.CDS1Gchil4426.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 262067..262669 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4426.t1.exon1Gchil4426.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 262067..262669 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4426.t1.stop1Gchil4426.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 262667..262669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4426.t1Gchil4426.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 262067..262669 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4426.t1 ID=Gchil4426.t1|Name=Gchil4426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=201bp
MPNRRNVAFITTPLPVTRRRNTLPAAPRTYIRLPPTFTTPRAEMVRVSVP
LKIEAPNSYCFELFSDLSNMPEWSSALEAVTRDSEDPSFSEWNFAWNGIR
LSWRARDVENMPNHSSDVPAIRWRSVSGLVHTGEVQFENLQPTATKMIMT
VDYDIESLVAAIMRSSVVSNFVEGAIESDLSRFRSYALRKYRKAKMSTGA
*
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spliced messenger RNA

>Gchil4426.t1 ID=Gchil4426.t1|Name=Gchil4426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00004426_pilon:262067..262669+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAACAGACGAAATGTGGCATTCATCACCACGCCCCTTCCTGTCAC
GCGGCGCCGCAACACCCTCCCCGCAGCCCCGCGCACATATATCCGGCTGC
CGCCCACATTCACCACCCCGCGAGCCGAGATGGTACGCGTCAGCGTTCCG
CTCAAAATTGAAGCCCCCAATAGCTACTGCTTCGAACTGTTCTCCGACCT
GTCTAACATGCCCGAGTGGTCCTCGGCGCTGGAGGCCGTCACGCGCGACA
GCGAAGATCCGTCTTTTTCCGAGTGGAACTTTGCGTGGAACGGAATTCGC
CTGAGTTGGCGAGCTAGGGACGTCGAAAACATGCCCAATCACTCTAGCGA
CGTCCCGGCTATCCGATGGCGCAGTGTTTCGGGACTGGTTCACACCGGCG
AGGTCCAATTTGAAAACTTGCAGCCCACTGCCACTAAAATGATTATGACT
GTGGATTATGACATTGAAAGTCTCGTCGCAGCCATTATGCGCTCATCCGT
CGTGTCCAACTTTGTCGAGGGGGCCATTGAGAGCGACCTCTCCAGATTCC
GCAGCTACGCCTTGCGTAAGTACCGCAAGGCAAAGATGTCAACCGGTGCA
TGA
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protein sequence of Gchil4426.t1

>Gchil4426.t1 ID=Gchil4426.t1|Name=Gchil4426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=201bp
MPNRRNVAFITTPLPVTRRRNTLPAAPRTYIRLPPTFTTPRAEMVRVSVP
LKIEAPNSYCFELFSDLSNMPEWSSALEAVTRDSEDPSFSEWNFAWNGIR
LSWRARDVENMPNHSSDVPAIRWRSVSGLVHTGEVQFENLQPTATKMIMT
VDYDIESLVAAIMRSSVVSNFVEGAIESDLSRFRSYALRKYRKAKMSTGA
*
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mRNA from alignment at tig00004426_pilon:262067..262669+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4426.t1 ID=Gchil4426.t1|Name=Gchil4426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00004426_pilon:262067..262669+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGAACAGACGAAATGTGGCATTCATCACCACGCCCCTTCCTGTCAC
GCGGCGCCGCAACACCCTCCCCGCAGCCCCGCGCACATATATCCGGCTGC
CGCCCACATTCACCACCCCGCGAGCCGAGATGGTACGCGTCAGCGTTCCG
CTCAAAATTGAAGCCCCCAATAGCTACTGCTTCGAACTGTTCTCCGACCT
GTCTAACATGCCCGAGTGGTCCTCGGCGCTGGAGGCCGTCACGCGCGACA
GCGAAGATCCGTCTTTTTCCGAGTGGAACTTTGCGTGGAACGGAATTCGC
CTGAGTTGGCGAGCTAGGGACGTCGAAAACATGCCCAATCACTCTAGCGA
CGTCCCGGCTATCCGATGGCGCAGTGTTTCGGGACTGGTTCACACCGGCG
AGGTCCAATTTGAAAACTTGCAGCCCACTGCCACTAAAATGATTATGACT
GTGGATTATGACATTGAAAGTCTCGTCGCAGCCATTATGCGCTCATCCGT
CGTGTCCAACTTTGTCGAGGGGGCCATTGAGAGCGACCTCTCCAGATTCC
GCAGCTACGCCTTGCGTAAGTACCGCAAGGCAAAGATGTCAACCGGTGCA
TGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:262067..262669+

>Gchil4426.t1 ID=Gchil4426.t1|Name=Gchil4426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=603bp|location=Sequence derived from alignment at tig00004426_pilon:262067..262669+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGAACAGACGAAATGTGGCATTCATCACCACGCCCCTTCCTGTCAC
GCGGCGCCGCAACACCCTCCCCGCAGCCCCGCGCACATATATCCGGCTGC
CGCCCACATTCACCACCCCGCGAGCCGAGATGGTACGCGTCAGCGTTCCG
CTCAAAATTGAAGCCCCCAATAGCTACTGCTTCGAACTGTTCTCCGACCT
GTCTAACATGCCCGAGTGGTCCTCGGCGCTGGAGGCCGTCACGCGCGACA
GCGAAGATCCGTCTTTTTCCGAGTGGAACTTTGCGTGGAACGGAATTCGC
CTGAGTTGGCGAGCTAGGGACGTCGAAAACATGCCCAATCACTCTAGCGA
CGTCCCGGCTATCCGATGGCGCAGTGTTTCGGGACTGGTTCACACCGGCG
AGGTCCAATTTGAAAACTTGCAGCCCACTGCCACTAAAATGATTATGACT
GTGGATTATGACATTGAAAGTCTCGTCGCAGCCATTATGCGCTCATCCGT
CGTGTCCAACTTTGTCGAGGGGGCCATTGAGAGCGACCTCTCCAGATTCC
GCAGCTACGCCTTGCGTAAGTACCGCAAGGCAAAGATGTCAACCGGTGCA
TGA
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