Gchil4349.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4349.t1
Unique NameGchil4349.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2187430..2188494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4349Gchil4349Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2187430..2188494 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4349.t1.stop1Gchil4349.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2187430..2187432 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4349.t1.CDS1Gchil4349.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2187430..2188494 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4349.t1.exon1Gchil4349.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2187430..2188494 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4349.t1.start1Gchil4349.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2188492..2188494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4349.t1Gchil4349.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2187430..2188494 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4349.t1 ID=Gchil4349.t1|Name=Gchil4349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=355bp
MSASLSHRASVRLPPVSVACNYRSVRLASTENLNFLPTSASFLDFNDDER
LQKLHVSTPSVVDRDACGAPAAPAANGVWHGLSFDDADSFSTFGTLTLEN
DVPPAPLPPSKEDMPRPVSDESDVPPVTALGRVARHKLDGEVDDGGGGGG
GGGGGGDDDDDGCLDVPKRIVSRPGASDALKDLQRASVTAGRELASSLRA
MAAAEASHTTSDSTNKHKHTNNSNNTNDKNSNSNNNSKHRRSESVSQAQG
ELLLRSRILRRWNVRYASIVHQGYFGAVLLLFRPEGKRALSNMALSNSKM
IALSDTAVRRLESRRPNAPLMFELRTSQRTYTFGCHDAHSREFWVNHLSL
PGGA*
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spliced messenger RNA

>Gchil4349.t1 ID=Gchil4349.t1|Name=Gchil4349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00004373_pilon:2187430..2188494- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCTCGCTCTCTCACCGAGCGTCGGTTCGCCTGCCCCCAGTGTC
TGTTGCCTGCAATTATCGTTCTGTGCGGCTTGCGTCCACGGAGAATCTCA
ACTTTCTGCCCACGTCTGCCTCATTTCTGGACTTTAACGACGACGAGCGT
CTGCAAAAGTTGCATGTATCCACACCGTCTGTGGTCGATCGTGATGCGTG
TGGTGCGCCTGCTGCGCCCGCGGCAAATGGCGTGTGGCATGGATTGTCGT
TTGATGATGCCGACTCGTTCTCGACGTTTGGCACGCTCACGCTGGAAAAT
GATGTGCCGCCGGCGCCGTTGCCTCCCTCAAAGGAGGACATGCCGCGTCC
CGTGTCAGACGAGAGTGATGTGCCGCCCGTCACGGCGCTTGGGCGCGTCG
CCCGCCACAAGCTTGATGGCGAGGTGGACGATGGCGGCGGCGGTGGCGGC
GGCGGCGGCGGCGGCGGAGACGACGACGACGACGGCTGTCTGGACGTCCC
CAAGCGCATTGTGTCGCGCCCGGGCGCCTCGGACGCGCTCAAGGATCTGC
AACGCGCCAGCGTCACCGCCGGGCGCGAGCTGGCATCCAGCCTGCGCGCC
ATGGCCGCTGCCGAGGCGAGCCACACCACCAGCGACAGCACCAACAAGCA
CAAGCACACCAACAACAGCAACAACACCAACGACAAGAACAGCAACAGCA
ACAACAATAGCAAACACAGACGCAGCGAAAGCGTGTCGCAGGCGCAGGGC
GAGCTGCTGCTGCGCAGCCGCATCCTACGTCGCTGGAACGTGCGCTACGC
GTCCATCGTGCACCAAGGGTACTTTGGCGCCGTGCTGCTGCTGTTCCGCC
CCGAGGGAAAGCGCGCCTTGTCCAACATGGCGCTCAGTAACAGCAAGATG
ATCGCGCTGAGCGACACTGCCGTGCGTCGTCTCGAGTCTAGACGCCCCAA
CGCGCCGCTCATGTTCGAGTTGCGCACCAGCCAGAGAACGTATACGTTTG
GCTGTCACGACGCGCACAGCCGCGAGTTTTGGGTGAACCACCTCAGCCTG
CCGGGCGGCGCGTGA
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protein sequence of Gchil4349.t1

>Gchil4349.t1 ID=Gchil4349.t1|Name=Gchil4349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=355bp
MSASLSHRASVRLPPVSVACNYRSVRLASTENLNFLPTSASFLDFNDDER
LQKLHVSTPSVVDRDACGAPAAPAANGVWHGLSFDDADSFSTFGTLTLEN
DVPPAPLPPSKEDMPRPVSDESDVPPVTALGRVARHKLDGEVDDGGGGGG
GGGGGGDDDDDGCLDVPKRIVSRPGASDALKDLQRASVTAGRELASSLRA
MAAAEASHTTSDSTNKHKHTNNSNNTNDKNSNSNNNSKHRRSESVSQAQG
ELLLRSRILRRWNVRYASIVHQGYFGAVLLLFRPEGKRALSNMALSNSKM
IALSDTAVRRLESRRPNAPLMFELRTSQRTYTFGCHDAHSREFWVNHLSL
PGGA*
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mRNA from alignment at tig00004373_pilon:2187430..2188494-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4349.t1 ID=Gchil4349.t1|Name=Gchil4349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00004373_pilon:2187430..2188494- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCCTCGCTCTCTCACCGAGCGTCGGTTCGCCTGCCCCCAGTGTC
TGTTGCCTGCAATTATCGTTCTGTGCGGCTTGCGTCCACGGAGAATCTCA
ACTTTCTGCCCACGTCTGCCTCATTTCTGGACTTTAACGACGACGAGCGT
CTGCAAAAGTTGCATGTATCCACACCGTCTGTGGTCGATCGTGATGCGTG
TGGTGCGCCTGCTGCGCCCGCGGCAAATGGCGTGTGGCATGGATTGTCGT
TTGATGATGCCGACTCGTTCTCGACGTTTGGCACGCTCACGCTGGAAAAT
GATGTGCCGCCGGCGCCGTTGCCTCCCTCAAAGGAGGACATGCCGCGTCC
CGTGTCAGACGAGAGTGATGTGCCGCCCGTCACGGCGCTTGGGCGCGTCG
CCCGCCACAAGCTTGATGGCGAGGTGGACGATGGCGGCGGCGGTGGCGGC
GGCGGCGGCGGCGGCGGAGACGACGACGACGACGGCTGTCTGGACGTCCC
CAAGCGCATTGTGTCGCGCCCGGGCGCCTCGGACGCGCTCAAGGATCTGC
AACGCGCCAGCGTCACCGCCGGGCGCGAGCTGGCATCCAGCCTGCGCGCC
ATGGCCGCTGCCGAGGCGAGCCACACCACCAGCGACAGCACCAACAAGCA
CAAGCACACCAACAACAGCAACAACACCAACGACAAGAACAGCAACAGCA
ACAACAATAGCAAACACAGACGCAGCGAAAGCGTGTCGCAGGCGCAGGGC
GAGCTGCTGCTGCGCAGCCGCATCCTACGTCGCTGGAACGTGCGCTACGC
GTCCATCGTGCACCAAGGGTACTTTGGCGCCGTGCTGCTGCTGTTCCGCC
CCGAGGGAAAGCGCGCCTTGTCCAACATGGCGCTCAGTAACAGCAAGATG
ATCGCGCTGAGCGACACTGCCGTGCGTCGTCTCGAGTCTAGACGCCCCAA
CGCGCCGCTCATGTTCGAGTTGCGCACCAGCCAGAGAACGTATACGTTTG
GCTGTCACGACGCGCACAGCCGCGAGTTTTGGGTGAACCACCTCAGCCTG
CCGGGCGGCGCGTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:2187430..2188494-

>Gchil4349.t1 ID=Gchil4349.t1|Name=Gchil4349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00004373_pilon:2187430..2188494- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCCTCGCTCTCTCACCGAGCGTCGGTTCGCCTGCCCCCAGTGTC
TGTTGCCTGCAATTATCGTTCTGTGCGGCTTGCGTCCACGGAGAATCTCA
ACTTTCTGCCCACGTCTGCCTCATTTCTGGACTTTAACGACGACGAGCGT
CTGCAAAAGTTGCATGTATCCACACCGTCTGTGGTCGATCGTGATGCGTG
TGGTGCGCCTGCTGCGCCCGCGGCAAATGGCGTGTGGCATGGATTGTCGT
TTGATGATGCCGACTCGTTCTCGACGTTTGGCACGCTCACGCTGGAAAAT
GATGTGCCGCCGGCGCCGTTGCCTCCCTCAAAGGAGGACATGCCGCGTCC
CGTGTCAGACGAGAGTGATGTGCCGCCCGTCACGGCGCTTGGGCGCGTCG
CCCGCCACAAGCTTGATGGCGAGGTGGACGATGGCGGCGGCGGTGGCGGC
GGCGGCGGCGGCGGCGGAGACGACGACGACGACGGCTGTCTGGACGTCCC
CAAGCGCATTGTGTCGCGCCCGGGCGCCTCGGACGCGCTCAAGGATCTGC
AACGCGCCAGCGTCACCGCCGGGCGCGAGCTGGCATCCAGCCTGCGCGCC
ATGGCCGCTGCCGAGGCGAGCCACACCACCAGCGACAGCACCAACAAGCA
CAAGCACACCAACAACAGCAACAACACCAACGACAAGAACAGCAACAGCA
ACAACAATAGCAAACACAGACGCAGCGAAAGCGTGTCGCAGGCGCAGGGC
GAGCTGCTGCTGCGCAGCCGCATCCTACGTCGCTGGAACGTGCGCTACGC
GTCCATCGTGCACCAAGGGTACTTTGGCGCCGTGCTGCTGCTGTTCCGCC
CCGAGGGAAAGCGCGCCTTGTCCAACATGGCGCTCAGTAACAGCAAGATG
ATCGCGCTGAGCGACACTGCCGTGCGTCGTCTCGAGTCTAGACGCCCCAA
CGCGCCGCTCATGTTCGAGTTGCGCACCAGCCAGAGAACGTATACGTTTG
GCTGTCACGACGCGCACAGCCGCGAGTTTTGGGTGAACCACCTCAGCCTG
CCGGGCGGCGCGTGA
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