Gchil4316.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4316.t1
Unique NameGchil4316.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2084596..2085630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002507415.1
PFAMsUDG
Max annot lvl2759|Eukaryota
Evalue6.05e-50
EggNOG OGs2EIJQ@1|root,2SNYZ@2759|Eukaryota
DescriptionUreE urease accessory protein, C-terminal domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4316Gchil4316Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2084596..2085630 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4316.t1.stop1Gchil4316.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2084596..2084598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4316.t1.CDS1Gchil4316.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2084596..2085630 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4316.t1.exon1Gchil4316.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2084596..2085630 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4316.t1.start1Gchil4316.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2085628..2085630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4316.t1Gchil4316.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2084596..2085630 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4316.t1 ID=Gchil4316.t1|Name=Gchil4316.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=345bp
MKTLQVAPRATFISAPQIFGLVKPSAERGGAKISVRPNHRSWLMCSDIGE
AAKASVFGPSPFQKYRIARSRSASSRSSRGTKPVIDTSSPEANVVARVEE
EVVNEIGEESKTEDANTETVSDPRTRNSNTNTSVDSKNIKDSKTYDEMQF
ASHEDLMQVLQHLENDPLKNEGGRIVTYRGSKTAKLMIIGEAPGEMEDKL
GKPFVGRAGELLDKIFDYGGFDTEKQIYVTNVVKRRPKKNRTPNLAEMQY
YKPYLLEEIRLIQPAIVVLAGAVAAQALLGPVSITKARGNWSGGGTEPWM
MPVFHPSYLLRNPIRKHDMVTDIEEIRRKYMQVVPHDTLHPLKR*
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spliced messenger RNA

>Gchil4316.t1 ID=Gchil4316.t1|Name=Gchil4316.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00004373_pilon:2084596..2085630- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAACTTTGCAAGTAGCACCAAGAGCGACATTCATTTCAGCTCCGCA
AATTTTCGGGCTGGTCAAACCAAGTGCCGAACGTGGAGGCGCTAAGATCT
CAGTCAGACCCAACCATAGGTCATGGTTAATGTGTTCAGATATCGGTGAA
GCTGCCAAAGCCTCAGTTTTCGGACCATCTCCGTTTCAGAAGTATCGCAT
AGCCCGTTCCCGCAGCGCAAGCAGTCGGTCATCAAGGGGAACCAAGCCGG
TGATTGACACATCCAGTCCGGAAGCGAATGTAGTTGCACGAGTGGAGGAG
GAAGTTGTGAACGAGATTGGCGAGGAGAGCAAAACAGAAGATGCAAACAC
CGAAACTGTATCCGACCCGAGAACCAGAAACAGCAACACTAACACGAGCG
TTGATAGCAAAAATATTAAAGATTCCAAGACCTATGACGAGATGCAGTTT
GCGTCACACGAAGATCTTATGCAAGTTTTACAGCATTTGGAGAACGACCC
ACTGAAAAACGAGGGTGGACGAATCGTGACGTACCGTGGATCCAAGACGG
CCAAGTTGATGATCATCGGTGAAGCGCCAGGAGAAATGGAGGACAAGTTG
GGAAAGCCGTTTGTGGGTCGAGCGGGTGAATTGTTGGACAAAATATTCGA
CTACGGGGGTTTCGACACAGAGAAACAGATTTATGTGACAAACGTAGTGA
AGAGAAGACCCAAGAAGAACAGGACACCGAACTTAGCTGAAATGCAGTAC
TACAAACCCTACCTTCTCGAGGAAATACGTTTGATCCAACCCGCAATCGT
TGTGCTTGCTGGTGCTGTCGCAGCACAAGCTTTATTAGGACCTGTGAGTA
TTACAAAGGCTAGAGGGAATTGGAGCGGAGGTGGAACCGAACCCTGGATG
ATGCCCGTGTTCCATCCATCGTATTTGCTGCGCAACCCAATACGTAAGCA
TGATATGGTTACAGATATAGAGGAAATCCGGCGCAAGTACATGCAAGTGG
TGCCACATGATACGCTTCATCCATTGAAAAGATGA
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protein sequence of Gchil4316.t1

>Gchil4316.t1 ID=Gchil4316.t1|Name=Gchil4316.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=345bp
MKTLQVAPRATFISAPQIFGLVKPSAERGGAKISVRPNHRSWLMCSDIGE
AAKASVFGPSPFQKYRIARSRSASSRSSRGTKPVIDTSSPEANVVARVEE
EVVNEIGEESKTEDANTETVSDPRTRNSNTNTSVDSKNIKDSKTYDEMQF
ASHEDLMQVLQHLENDPLKNEGGRIVTYRGSKTAKLMIIGEAPGEMEDKL
GKPFVGRAGELLDKIFDYGGFDTEKQIYVTNVVKRRPKKNRTPNLAEMQY
YKPYLLEEIRLIQPAIVVLAGAVAAQALLGPVSITKARGNWSGGGTEPWM
MPVFHPSYLLRNPIRKHDMVTDIEEIRRKYMQVVPHDTLHPLKR*
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mRNA from alignment at tig00004373_pilon:2084596..2085630-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4316.t1 ID=Gchil4316.t1|Name=Gchil4316.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00004373_pilon:2084596..2085630- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAACTTTGCAAGTAGCACCAAGAGCGACATTCATTTCAGCTCCGCA
AATTTTCGGGCTGGTCAAACCAAGTGCCGAACGTGGAGGCGCTAAGATCT
CAGTCAGACCCAACCATAGGTCATGGTTAATGTGTTCAGATATCGGTGAA
GCTGCCAAAGCCTCAGTTTTCGGACCATCTCCGTTTCAGAAGTATCGCAT
AGCCCGTTCCCGCAGCGCAAGCAGTCGGTCATCAAGGGGAACCAAGCCGG
TGATTGACACATCCAGTCCGGAAGCGAATGTAGTTGCACGAGTGGAGGAG
GAAGTTGTGAACGAGATTGGCGAGGAGAGCAAAACAGAAGATGCAAACAC
CGAAACTGTATCCGACCCGAGAACCAGAAACAGCAACACTAACACGAGCG
TTGATAGCAAAAATATTAAAGATTCCAAGACCTATGACGAGATGCAGTTT
GCGTCACACGAAGATCTTATGCAAGTTTTACAGCATTTGGAGAACGACCC
ACTGAAAAACGAGGGTGGACGAATCGTGACGTACCGTGGATCCAAGACGG
CCAAGTTGATGATCATCGGTGAAGCGCCAGGAGAAATGGAGGACAAGTTG
GGAAAGCCGTTTGTGGGTCGAGCGGGTGAATTGTTGGACAAAATATTCGA
CTACGGGGGTTTCGACACAGAGAAACAGATTTATGTGACAAACGTAGTGA
AGAGAAGACCCAAGAAGAACAGGACACCGAACTTAGCTGAAATGCAGTAC
TACAAACCCTACCTTCTCGAGGAAATACGTTTGATCCAACCCGCAATCGT
TGTGCTTGCTGGTGCTGTCGCAGCACAAGCTTTATTAGGACCTGTGAGTA
TTACAAAGGCTAGAGGGAATTGGAGCGGAGGTGGAACCGAACCCTGGATG
ATGCCCGTGTTCCATCCATCGTATTTGCTGCGCAACCCAATACGTAAGCA
TGATATGGTTACAGATATAGAGGAAATCCGGCGCAAGTACATGCAAGTGG
TGCCACATGATACGCTTCATCCATTGAAAAGATGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:2084596..2085630-

>Gchil4316.t1 ID=Gchil4316.t1|Name=Gchil4316.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1035bp|location=Sequence derived from alignment at tig00004373_pilon:2084596..2085630- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAACTTTGCAAGTAGCACCAAGAGCGACATTCATTTCAGCTCCGCA
AATTTTCGGGCTGGTCAAACCAAGTGCCGAACGTGGAGGCGCTAAGATCT
CAGTCAGACCCAACCATAGGTCATGGTTAATGTGTTCAGATATCGGTGAA
GCTGCCAAAGCCTCAGTTTTCGGACCATCTCCGTTTCAGAAGTATCGCAT
AGCCCGTTCCCGCAGCGCAAGCAGTCGGTCATCAAGGGGAACCAAGCCGG
TGATTGACACATCCAGTCCGGAAGCGAATGTAGTTGCACGAGTGGAGGAG
GAAGTTGTGAACGAGATTGGCGAGGAGAGCAAAACAGAAGATGCAAACAC
CGAAACTGTATCCGACCCGAGAACCAGAAACAGCAACACTAACACGAGCG
TTGATAGCAAAAATATTAAAGATTCCAAGACCTATGACGAGATGCAGTTT
GCGTCACACGAAGATCTTATGCAAGTTTTACAGCATTTGGAGAACGACCC
ACTGAAAAACGAGGGTGGACGAATCGTGACGTACCGTGGATCCAAGACGG
CCAAGTTGATGATCATCGGTGAAGCGCCAGGAGAAATGGAGGACAAGTTG
GGAAAGCCGTTTGTGGGTCGAGCGGGTGAATTGTTGGACAAAATATTCGA
CTACGGGGGTTTCGACACAGAGAAACAGATTTATGTGACAAACGTAGTGA
AGAGAAGACCCAAGAAGAACAGGACACCGAACTTAGCTGAAATGCAGTAC
TACAAACCCTACCTTCTCGAGGAAATACGTTTGATCCAACCCGCAATCGT
TGTGCTTGCTGGTGCTGTCGCAGCACAAGCTTTATTAGGACCTGTGAGTA
TTACAAAGGCTAGAGGGAATTGGAGCGGAGGTGGAACCGAACCCTGGATG
ATGCCCGTGTTCCATCCATCGTATTTGCTGCGCAACCCAATACGTAAGCA
TGATATGGTTACAGATATAGAGGAAATCCGGCGCAAGTACATGCAAGTGG
TGCCACATGATACGCTTCATCCATTGAAAAGATGA
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