Gchil4302.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4302.t1
Unique NameGchil4302.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length661
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1984793..1986857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003294087.1
PFAMsDicty_CTDC,PA14
Max annot lvl554915|Amoebozoa
GOsGO:0005575,GO:0005576
Evalue4.84e-05
EggNOG OGs2D42B@1|root,2STKH@2759|Eukaryota,3XFXT@554915|Amoebozoa
DescriptionPA14 domain
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4302Gchil4302Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1984793..1986857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4302.t1Gchil4302.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1984793..1986857 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4302.t1.stop1Gchil4302.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1984793..1984795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4302.t1.CDS1Gchil4302.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1984793..1985027 -
Gchil4302.t1.CDS2Gchil4302.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1985110..1986857 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4302.t1.exon1Gchil4302.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1984793..1985027 -
Gchil4302.t1.exon2Gchil4302.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1985110..1986857 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4302.t1.intron1Gchil4302.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1985028..1985109 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4302.t1.start1Gchil4302.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1986855..1986857 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4302.t1 ID=Gchil4302.t1|Name=Gchil4302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=661bp
MKIFTLCAAFVLLLCSSSAHPLERFSPVQLPHLSLRASSLAACGYDTFQS
GSQTLFAGRDQREVGSVEFTLSSSGISVEYSVIDGCVLKDDIHVNIVNQV
LETVRPGRFPCKDSVSGSPTTVSITCPATSFTGLNCCERLYVYTHGVVSC
QSGSDTVYAGVPVCTGRGQWCNAVIIDDPPCECACENDACVVPQDCAISN
PGSCDSGVVKCPAACAPGPDVSCGAYPETCTSGPVCDSAECEDTEPCDPD
ECPPEGVCPNAAASFDAPKTCVSATPCECGSGTYCKDKSECATQPITCGS
DTCDDGMMKCPGECEMPSVDCGAYPDTCTSGPVCDSADCEDTEPCDPDEC
PPEGVCPNAAASFDAPKTCVSATPCECGSGTYCKDKSECATQPITCGSDT
CDDGMMKCPGECEMPSVDCGAYPDTCTSGPVCDSADCEDTEPCDPDECPP
EGVCPNAAASFDAPKTCVSATPCECGSGTYCKDKSECATQPIMCGSDTCD
EGVMKCEKDCVMPSDCGLPDCSITECPDKCPTKCCDPCPPCFKPDPDSTT
CNCIPDANDTCDPCVGGGNALCGASGLPPRFQCCPPTSGCKSSVIPRRLN
STPNDLRVSFICSSSCGESCDVKTSMGESRACSLFDPVPLGTDNNPDTDD
VFDTCPDLAV*
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spliced messenger RNA

>Gchil4302.t1 ID=Gchil4302.t1|Name=Gchil4302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1983bp|location=Sequence derived from alignment at tig00004373_pilon:1984793..1986857- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAATCTTTACTCTCTGTGCGGCATTCGTATTACTGCTTTGCAGCTC
ATCTGCACATCCCCTCGAGAGATTCAGCCCGGTGCAACTACCTCACCTCT
CCCTTCGCGCCAGCAGTCTAGCTGCGTGCGGATATGACACCTTCCAATCA
GGCTCCCAGACCTTGTTTGCCGGCCGCGATCAGCGAGAAGTCGGTTCCGT
CGAGTTTACTCTTTCTAGCTCCGGAATTTCGGTGGAATATTCCGTCATTG
ATGGATGCGTTCTAAAGGACGACATTCACGTCAATATCGTCAATCAAGTA
CTCGAAACAGTTCGTCCGGGCCGGTTCCCGTGCAAAGATTCTGTATCCGG
CTCACCGACGACTGTTTCGATCACCTGTCCCGCCACCTCTTTCACAGGTC
TCAACTGTTGTGAAAGGCTCTACGTCTACACGCACGGTGTAGTGAGTTGC
CAATCTGGGTCGGACACTGTATACGCTGGAGTTCCAGTCTGCACCGGCAG
GGGTCAGTGGTGCAACGCTGTCATCATCGACGATCCTCCCTGCGAATGTG
CTTGTGAAAACGATGCATGTGTTGTGCCACAGGATTGTGCGATAAGCAAT
CCCGGTTCTTGCGATTCAGGCGTGGTGAAATGCCCTGCCGCCTGTGCTCC
AGGACCGGATGTGAGTTGCGGCGCATATCCGGAAACTTGCACATCCGGGC
CTGTGTGTGACTCCGCCGAATGCGAGGACACAGAACCCTGTGACCCAGAT
GAATGTCCTCCAGAGGGAGTGTGTCCAAATGCTGCCGCTAGCTTCGACGC
TCCTAAGACGTGTGTGTCAGCTACGCCTTGCGAGTGTGGAAGCGGCACCT
ATTGCAAAGACAAGTCAGAATGCGCCACTCAGCCGATTACATGCGGCTCT
GACACCTGTGACGATGGCATGATGAAATGTCCAGGCGAATGTGAGATGCC
GTCGGTGGACTGTGGCGCATATCCGGACACTTGCACATCCGGGCCTGTGT
GTGACTCCGCCGATTGCGAGGACACAGAACCCTGTGACCCAGATGAATGT
CCTCCAGAGGGAGTGTGTCCAAATGCTGCCGCTAGCTTCGACGCTCCTAA
GACGTGTGTGTCAGCTACGCCTTGCGAGTGTGGAAGCGGCACCTATTGCA
AAGACAAGTCAGAATGCGCCACTCAGCCGATTACATGCGGCTCTGACACC
TGTGACGATGGCATGATGAAATGTCCAGGCGAATGTGAGATGCCGTCGGT
GGACTGTGGCGCATATCCGGACACTTGCACATCCGGGCCTGTGTGTGACT
CCGCCGATTGCGAGGACACAGAACCCTGTGACCCAGATGAATGTCCTCCA
GAGGGAGTGTGTCCAAATGCTGCCGCTAGCTTCGACGCTCCTAAGACGTG
TGTGTCAGCAACGCCTTGCGAGTGTGGAAGCGGCACCTATTGCAAAGACA
AGTCAGAATGCGCCACTCAGCCGATTATGTGCGGCTCTGACACCTGTGAT
GAAGGCGTTATGAAATGTGAAAAGGACTGTGTGATGCCATCTGACTGCGG
ATTACCTGATTGCAGTATTACCGAATGCCCTGACAAATGTCCCACAAAAT
GCTGTGATCCATGTCCGCCGTGTTTCAAGCCCGACCCCGATTCTACGACA
TGCAATTGTATTCCGGATGCAAATGATACTTGCGATCCGTGTGTAGGTGG
AGGAAATGCACTCTGCGGCGCATCAGGATTGCCTCCAAGGTTTCAGTGCT
GTCCACCGACGTCGGGTTGCAAATCGAGTGTGATACCAAGACGACTCAAC
TCAACGCCGAATGATCTCAGGGTATCGTTCATTTGCTCTTCCAGCTGTGG
CGAATCATGCGACGTCAAAACCTCGATGGGCGAAAGTCGAGCTTGCTCTT
TGTTCGACCCTGTGCCACTAGGAACTGATAACAATCCCGACACCGATGAT
GTATTTGACACATGCCCGGATCTGGCCGTCTAG
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protein sequence of Gchil4302.t1

>Gchil4302.t1 ID=Gchil4302.t1|Name=Gchil4302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=661bp
MKIFTLCAAFVLLLCSSSAHPLERFSPVQLPHLSLRASSLAACGYDTFQS
GSQTLFAGRDQREVGSVEFTLSSSGISVEYSVIDGCVLKDDIHVNIVNQV
LETVRPGRFPCKDSVSGSPTTVSITCPATSFTGLNCCERLYVYTHGVVSC
QSGSDTVYAGVPVCTGRGQWCNAVIIDDPPCECACENDACVVPQDCAISN
PGSCDSGVVKCPAACAPGPDVSCGAYPETCTSGPVCDSAECEDTEPCDPD
ECPPEGVCPNAAASFDAPKTCVSATPCECGSGTYCKDKSECATQPITCGS
DTCDDGMMKCPGECEMPSVDCGAYPDTCTSGPVCDSADCEDTEPCDPDEC
PPEGVCPNAAASFDAPKTCVSATPCECGSGTYCKDKSECATQPITCGSDT
CDDGMMKCPGECEMPSVDCGAYPDTCTSGPVCDSADCEDTEPCDPDECPP
EGVCPNAAASFDAPKTCVSATPCECGSGTYCKDKSECATQPIMCGSDTCD
EGVMKCEKDCVMPSDCGLPDCSITECPDKCPTKCCDPCPPCFKPDPDSTT
CNCIPDANDTCDPCVGGGNALCGASGLPPRFQCCPPTSGCKSSVIPRRLN
STPNDLRVSFICSSSCGESCDVKTSMGESRACSLFDPVPLGTDNNPDTDD
VFDTCPDLAV*
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mRNA from alignment at tig00004373_pilon:1984793..1986857-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4302.t1 ID=Gchil4302.t1|Name=Gchil4302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2065bp|location=Sequence derived from alignment at tig00004373_pilon:1984793..1986857- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAATCTTTACTCTCTGTGCGGCATTCGTATTACTGCTTTGCAGCTC
ATCTGCACATCCCCTCGAGAGATTCAGCCCGGTGCAACTACCTCACCTCT
CCCTTCGCGCCAGCAGTCTAGCTGCGTGCGGATATGACACCTTCCAATCA
GGCTCCCAGACCTTGTTTGCCGGCCGCGATCAGCGAGAAGTCGGTTCCGT
CGAGTTTACTCTTTCTAGCTCCGGAATTTCGGTGGAATATTCCGTCATTG
ATGGATGCGTTCTAAAGGACGACATTCACGTCAATATCGTCAATCAAGTA
CTCGAAACAGTTCGTCCGGGCCGGTTCCCGTGCAAAGATTCTGTATCCGG
CTCACCGACGACTGTTTCGATCACCTGTCCCGCCACCTCTTTCACAGGTC
TCAACTGTTGTGAAAGGCTCTACGTCTACACGCACGGTGTAGTGAGTTGC
CAATCTGGGTCGGACACTGTATACGCTGGAGTTCCAGTCTGCACCGGCAG
GGGTCAGTGGTGCAACGCTGTCATCATCGACGATCCTCCCTGCGAATGTG
CTTGTGAAAACGATGCATGTGTTGTGCCACAGGATTGTGCGATAAGCAAT
CCCGGTTCTTGCGATTCAGGCGTGGTGAAATGCCCTGCCGCCTGTGCTCC
AGGACCGGATGTGAGTTGCGGCGCATATCCGGAAACTTGCACATCCGGGC
CTGTGTGTGACTCCGCCGAATGCGAGGACACAGAACCCTGTGACCCAGAT
GAATGTCCTCCAGAGGGAGTGTGTCCAAATGCTGCCGCTAGCTTCGACGC
TCCTAAGACGTGTGTGTCAGCTACGCCTTGCGAGTGTGGAAGCGGCACCT
ATTGCAAAGACAAGTCAGAATGCGCCACTCAGCCGATTACATGCGGCTCT
GACACCTGTGACGATGGCATGATGAAATGTCCAGGCGAATGTGAGATGCC
GTCGGTGGACTGTGGCGCATATCCGGACACTTGCACATCCGGGCCTGTGT
GTGACTCCGCCGATTGCGAGGACACAGAACCCTGTGACCCAGATGAATGT
CCTCCAGAGGGAGTGTGTCCAAATGCTGCCGCTAGCTTCGACGCTCCTAA
GACGTGTGTGTCAGCTACGCCTTGCGAGTGTGGAAGCGGCACCTATTGCA
AAGACAAGTCAGAATGCGCCACTCAGCCGATTACATGCGGCTCTGACACC
TGTGACGATGGCATGATGAAATGTCCAGGCGAATGTGAGATGCCGTCGGT
GGACTGTGGCGCATATCCGGACACTTGCACATCCGGGCCTGTGTGTGACT
CCGCCGATTGCGAGGACACAGAACCCTGTGACCCAGATGAATGTCCTCCA
GAGGGAGTGTGTCCAAATGCTGCCGCTAGCTTCGACGCTCCTAAGACGTG
TGTGTCAGCAACGCCTTGCGAGTGTGGAAGCGGCACCTATTGCAAAGACA
AGTCAGAATGCGCCACTCAGCCGATTATGTGCGGCTCTGACACCTGTGAT
GAAGGCGTTATGAAATGTGAAAAGGACTGTGTGATGCCATCTGACTGCGG
ATTACCTGATTGCAGTATTACCGAATGCCCTGACAAATGTCCCACAAAAT
GCTGTGATCCATGTCCGCCGTGTTTCAAGCCCGACCCCGATTCTACGACA
TGCAATTGTATTCCGGATGCAAATGATACTTGCGATCCGTGTGTAGGTGG
AGGAAATGCACTCTGCGGCGCATCAGGATTGCCTCCAAGGTTTCAGTGGT
ATGTTTCTAAGCGTCTCTTCACGATCCCGTTCGAGTAACTAGGAGAATAT
CTAACTATTTTTTTGTTTTTCTTGGAACAGCTGTCCACCGACGTCGGGTT
GCAAATCGAGTGTGATACCAAGACGACTCAACTCAACGCCGAATGATCTC
AGGGTATCGTTCATTTGCTCTTCCAGCTGTGGCGAATCATGCGACGTCAA
AACCTCGATGGGCGAAAGTCGAGCTTGCTCTTTGTTCGACCCTGTGCCAC
TAGGAACTGATAACAATCCCGACACCGATGATGTATTTGACACATGCCCG
GATCTGGCCGTCTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:1984793..1986857-

>Gchil4302.t1 ID=Gchil4302.t1|Name=Gchil4302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1983bp|location=Sequence derived from alignment at tig00004373_pilon:1984793..1986857- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAATCTTTACTCTCTGTGCGGCATTCGTATTACTGCTTTGCAGCTC
ATCTGCACATCCCCTCGAGAGATTCAGCCCGGTGCAACTACCTCACCTCT
CCCTTCGCGCCAGCAGTCTAGCTGCGTGCGGATATGACACCTTCCAATCA
GGCTCCCAGACCTTGTTTGCCGGCCGCGATCAGCGAGAAGTCGGTTCCGT
CGAGTTTACTCTTTCTAGCTCCGGAATTTCGGTGGAATATTCCGTCATTG
ATGGATGCGTTCTAAAGGACGACATTCACGTCAATATCGTCAATCAAGTA
CTCGAAACAGTTCGTCCGGGCCGGTTCCCGTGCAAAGATTCTGTATCCGG
CTCACCGACGACTGTTTCGATCACCTGTCCCGCCACCTCTTTCACAGGTC
TCAACTGTTGTGAAAGGCTCTACGTCTACACGCACGGTGTAGTGAGTTGC
CAATCTGGGTCGGACACTGTATACGCTGGAGTTCCAGTCTGCACCGGCAG
GGGTCAGTGGTGCAACGCTGTCATCATCGACGATCCTCCCTGCGAATGTG
CTTGTGAAAACGATGCATGTGTTGTGCCACAGGATTGTGCGATAAGCAAT
CCCGGTTCTTGCGATTCAGGCGTGGTGAAATGCCCTGCCGCCTGTGCTCC
AGGACCGGATGTGAGTTGCGGCGCATATCCGGAAACTTGCACATCCGGGC
CTGTGTGTGACTCCGCCGAATGCGAGGACACAGAACCCTGTGACCCAGAT
GAATGTCCTCCAGAGGGAGTGTGTCCAAATGCTGCCGCTAGCTTCGACGC
TCCTAAGACGTGTGTGTCAGCTACGCCTTGCGAGTGTGGAAGCGGCACCT
ATTGCAAAGACAAGTCAGAATGCGCCACTCAGCCGATTACATGCGGCTCT
GACACCTGTGACGATGGCATGATGAAATGTCCAGGCGAATGTGAGATGCC
GTCGGTGGACTGTGGCGCATATCCGGACACTTGCACATCCGGGCCTGTGT
GTGACTCCGCCGATTGCGAGGACACAGAACCCTGTGACCCAGATGAATGT
CCTCCAGAGGGAGTGTGTCCAAATGCTGCCGCTAGCTTCGACGCTCCTAA
GACGTGTGTGTCAGCTACGCCTTGCGAGTGTGGAAGCGGCACCTATTGCA
AAGACAAGTCAGAATGCGCCACTCAGCCGATTACATGCGGCTCTGACACC
TGTGACGATGGCATGATGAAATGTCCAGGCGAATGTGAGATGCCGTCGGT
GGACTGTGGCGCATATCCGGACACTTGCACATCCGGGCCTGTGTGTGACT
CCGCCGATTGCGAGGACACAGAACCCTGTGACCCAGATGAATGTCCTCCA
GAGGGAGTGTGTCCAAATGCTGCCGCTAGCTTCGACGCTCCTAAGACGTG
TGTGTCAGCAACGCCTTGCGAGTGTGGAAGCGGCACCTATTGCAAAGACA
AGTCAGAATGCGCCACTCAGCCGATTATGTGCGGCTCTGACACCTGTGAT
GAAGGCGTTATGAAATGTGAAAAGGACTGTGTGATGCCATCTGACTGCGG
ATTACCTGATTGCAGTATTACCGAATGCCCTGACAAATGTCCCACAAAAT
GCTGTGATCCATGTCCGCCGTGTTTCAAGCCCGACCCCGATTCTACGACA
TGCAATTGTATTCCGGATGCAAATGATACTTGCGATCCGTGTGTAGGTGG
AGGAAATGCACTCTGCGGCGCATCAGGATTGCCTCCAAGGTTTCAGTGCT
GTCCACCGACGTCGGGTTGCAAATCGAGTGTGATACCAAGACGACTCAAC
TCAACGCCGAATGATCTCAGGGTATCGTTCATTTGCTCTTCCAGCTGTGG
CGAATCATGCGACGTCAAAACCTCGATGGGCGAAAGTCGAGCTTGCTCTT
TGTTCGACCCTGTGCCACTAGGAACTGATAACAATCCCGACACCGATGAT
GTATTTGACACATGCCCGGATCTGGCCGTCTAG
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