Gchil4300.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4300.t1
Unique NameGchil4300.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1982827..1983591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4300Gchil4300Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1982827..1983591 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4300.t1.start1Gchil4300.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1982827..1982829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4300.t1.CDS1Gchil4300.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1982827..1983591 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4300.t1.exon1Gchil4300.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1982827..1983591 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4300.t1.stop1Gchil4300.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1983589..1983591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4300.t1Gchil4300.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1982827..1983591 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4300.t1 ID=Gchil4300.t1|Name=Gchil4300.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=255bp
MCSLHTSSPHHVESSERELADITAAAGASGPVAGHAAAGVAVDANDVQHA
AGEAVNDAQGEAAAGECEGKGGGKGEGEEIGSEKPLLMSDISQMMETMHS
KNLMLKKLVRMQQKRVELLKTENEELRRDGKRKDARLKNAEVTMEYLRRE
MEEQRGGDTNNKQASSGDSGSLDERATTVRRNSATATGGSGKQRARRTSA
HWVMQRVARRVSAMKGGRAKKGVALCVCTLGGALVLAAMLHSWSRDGGDS
SATK*
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spliced messenger RNA

>Gchil4300.t1 ID=Gchil4300.t1|Name=Gchil4300.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00004373_pilon:1982827..1983591+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTTCTTTGCATACAAGCTCGCCGCACCACGTCGAGAGTAGCGAGCG
AGAGTTGGCGGACATTACGGCGGCAGCTGGGGCGTCGGGGCCGGTGGCAG
GACACGCGGCAGCCGGTGTGGCGGTGGACGCCAACGATGTGCAACATGCC
GCGGGCGAGGCAGTGAATGATGCACAAGGAGAGGCGGCAGCgggcgaatg
tgagggtaagggcgggggaaagggcgagggcgaggAGATTGGAAGCGAAA
AGCCTCTACTGATGAGCGACATATCTCAGATGATGGAGACGATGCATTCC
AAGAACCTGATGCTGAAGAAGCTGGTGCGAATGCAGCAAAAGCGCGTGGA
ACTGCTCAAAACGGAAAACGAGGAACTTCGGCGCGACGGCAAGCGCAAGG
ACGCGCGGCTGAAGAACGCAGAGGTGACAATGGAGTATCTACGGCGCGAG
ATGGAGGAGCAACGCGGCGGCGACACCAACAACAAGCAGGCCAGCAGCGG
CGACAGCGGCAGTCTAGACGAGAGGGCAACAACAGTGCGACGAAACAGCG
CGACGGCGACAGGGGGGAGCGGCAAGCAACGCGCGCGTCGGACGTCGGCG
CATTGGGTTATGCAACGCGTAGCGCGGCGAGTGAGCGCCATGAAGGGCGG
GCGCGCGAAGAAGGGCGTGGCACTATGCGTGTGCACGTTAGGCGGCGCGC
TAGTGCTAGCCGCCATGCTTCACTCGTGGAGTCGCGACGGCGGCGACAGC
AGCGCCACAAAGTAA
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protein sequence of Gchil4300.t1

>Gchil4300.t1 ID=Gchil4300.t1|Name=Gchil4300.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=255bp
MCSLHTSSPHHVESSERELADITAAAGASGPVAGHAAAGVAVDANDVQHA
AGEAVNDAQGEAAAGECEGKGGGKGEGEEIGSEKPLLMSDISQMMETMHS
KNLMLKKLVRMQQKRVELLKTENEELRRDGKRKDARLKNAEVTMEYLRRE
MEEQRGGDTNNKQASSGDSGSLDERATTVRRNSATATGGSGKQRARRTSA
HWVMQRVARRVSAMKGGRAKKGVALCVCTLGGALVLAAMLHSWSRDGGDS
SATK*
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mRNA from alignment at tig00004373_pilon:1982827..1983591+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4300.t1 ID=Gchil4300.t1|Name=Gchil4300.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00004373_pilon:1982827..1983591+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGTTCTTTGCATACAAGCTCGCCGCACCACGTCGAGAGTAGCGAGCG
AGAGTTGGCGGACATTACGGCGGCAGCTGGGGCGTCGGGGCCGGTGGCAG
GACACGCGGCAGCCGGTGTGGCGGTGGACGCCAACGATGTGCAACATGCC
GCGGGCGAGGCAGTGAATGATGCACAAGGAGAGGCGGCAGCgggcgaatg
tgagggtaagggcgggggaaagggcgagggcgaggAGATTGGAAGCGAAA
AGCCTCTACTGATGAGCGACATATCTCAGATGATGGAGACGATGCATTCC
AAGAACCTGATGCTGAAGAAGCTGGTGCGAATGCAGCAAAAGCGCGTGGA
ACTGCTCAAAACGGAAAACGAGGAACTTCGGCGCGACGGCAAGCGCAAGG
ACGCGCGGCTGAAGAACGCAGAGGTGACAATGGAGTATCTACGGCGCGAG
ATGGAGGAGCAACGCGGCGGCGACACCAACAACAAGCAGGCCAGCAGCGG
CGACAGCGGCAGTCTAGACGAGAGGGCAACAACAGTGCGACGAAACAGCG
CGACGGCGACAGGGGGGAGCGGCAAGCAACGCGCGCGTCGGACGTCGGCG
CATTGGGTTATGCAACGCGTAGCGCGGCGAGTGAGCGCCATGAAGGGCGG
GCGCGCGAAGAAGGGCGTGGCACTATGCGTGTGCACGTTAGGCGGCGCGC
TAGTGCTAGCCGCCATGCTTCACTCGTGGAGTCGCGACGGCGGCGACAGC
AGCGCCACAAAGTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1982827..1983591+

>Gchil4300.t1 ID=Gchil4300.t1|Name=Gchil4300.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=765bp|location=Sequence derived from alignment at tig00004373_pilon:1982827..1983591+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGTTCTTTGCATACAAGCTCGCCGCACCACGTCGAGAGTAGCGAGCG
AGAGTTGGCGGACATTACGGCGGCAGCTGGGGCGTCGGGGCCGGTGGCAG
GACACGCGGCAGCCGGTGTGGCGGTGGACGCCAACGATGTGCAACATGCC
GCGGGCGAGGCAGTGAATGATGCACAAGGAGAGGCGGCAGCgggcgaatg
tgagggtaagggcgggggaaagggcgagggcgaggAGATTGGAAGCGAAA
AGCCTCTACTGATGAGCGACATATCTCAGATGATGGAGACGATGCATTCC
AAGAACCTGATGCTGAAGAAGCTGGTGCGAATGCAGCAAAAGCGCGTGGA
ACTGCTCAAAACGGAAAACGAGGAACTTCGGCGCGACGGCAAGCGCAAGG
ACGCGCGGCTGAAGAACGCAGAGGTGACAATGGAGTATCTACGGCGCGAG
ATGGAGGAGCAACGCGGCGGCGACACCAACAACAAGCAGGCCAGCAGCGG
CGACAGCGGCAGTCTAGACGAGAGGGCAACAACAGTGCGACGAAACAGCG
CGACGGCGACAGGGGGGAGCGGCAAGCAACGCGCGCGTCGGACGTCGGCG
CATTGGGTTATGCAACGCGTAGCGCGGCGAGTGAGCGCCATGAAGGGCGG
GCGCGCGAAGAAGGGCGTGGCACTATGCGTGTGCACGTTAGGCGGCGCGC
TAGTGCTAGCCGCCATGCTTCACTCGTGGAGTCGCGACGGCGGCGACAGC
AGCGCCACAAAGTAA
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