Gchil4298.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4298.t1
Unique Name	Gchil4298.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	480

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1961260..1962699 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	400682.PAC_15703406
Preferred name	NELFB
PFAMs	COBRA1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K15180
GOs	GO:0000122,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0017053,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032021,GO:0032774,GO:0032784,GO:0032785,GO:0032991,GO:0034243,GO:0034244,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
Evalue	1.37e-05
EggNOG OGs	2C1MK@1\|root,2QTMJ@2759\|Eukaryota,38DIG@33154\|Opisthokonta,3BF4A@33208\|Metazoa
Description	negative regulation of transcription elongation from RNA polymerase II promoter
COG category	S
BRITE	ko00000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4298	Gchil4298	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1961260..1962699 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4298.t1.start1	Gchil4298.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1961260..1961262 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4298.t1.CDS1	Gchil4298.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1961260..1962699 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4298.t1.exon1	Gchil4298.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1961260..1962699 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4298.t1.stop1	Gchil4298.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1962697..1962699 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4298.t1	Gchil4298.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1961260..1962699 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1961260..1962699+
coding sequence from alignment at tig00004373_pilon:1961260..1962699+

mRNA sequence

>Gchil4298.t1 ID=Gchil4298.t1|Name=Gchil4298.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=480bp
MEQALNPKVYQIGYAGKDAVKECFENRDYEIEKVVDFIMEFKNLRGLQFE
TTPLRLLKKGGFAPSRTLSDVLRIVIDRMKRDVASLPHDKLDCLLEKSFT
YLTVPHLASVPIATLEHLNVVDPNIWKQIVDNGLNDSPYTDLPLSIKKRI
WSFEPKALDHEIDALIDSLPEMGTPENVDDFASKLDRHRMRSTSAKLNEL
LRMLEGMGENEVMQVMEKMVERAAVEQVSAKLDTIGTFFHDLVLRLPTAA
VSGPNLMTVRKIAKLLDTHASHEINLDTHLLREIREVMSAERPNGAVTLL
LGSTYSRDFLAEQVVYGLITRRGPINDFTDGNILKSAAAHLKADPYIEDL
TFLNICNMKTGTLLSGSSSVTDAELEEPFQLFFQLMMDEIHLEITHFQDS
YYSANEMLPNTRLVEAVQKGRLQRRVLTSYCLQQYIHGNLVALSRYRLLL
EDVLRAADNVTEPREVTLAYQLIIKIIGP*

spliced messenger RNA

>Gchil4298.t1 ID=Gchil4298.t1|Name=Gchil4298.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00004373_pilon:1961260..1962699+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACAAGCTCTAAACCCAAAAGTTTATCAAATTGGTTATGCGGGGAA
AGATGCCGTCAAAGAATGCTTCGAAAACCGGGACTATGAGATAGAAAAAG
TTGTTGACTTCATCATGGAGTTCAAAAATTTGAGAGGGTTGCAGTTTGAA
ACTACTCCTCTAAGGCTTTTGAAGAAGGGCGGATTCGCTCCCAGTCGCAC
GTTAAGTGACGTTCTCAGGATTGTCATAGACAGGATGAAGCGAGACGTTG
CTTCACTTCCACACGATAAGCTGGATTGTTTATTGGAAAAAAGCTTCACC
TATCTCACAGTCCCACATCTCGCATCAGTTCCGATTGCCACACTGGAACA
CCTAAATGTTGTTGACCCGAACATATGGAAACAAATAGTTGACAACGGGC
TGAATGACTCCCCATATACAGATCTCCCTCTTTCTATTAAGAAAAGAATA
TGGTCATTCGAGCCTAAAGCATTGGACCATGAAATAGACGCTTTAATTGA
TAGTTTACCAGAAATGGGCACCCCTGAAAATGTGGATGACTTTGCTTCTA
AGCTTGATCGACACAGAATGCGTTCAACAAGCGCTAAGCTTAATGAATTG
CTTCGGATGCTGGAAGGAATGGGTGAAAATGAAGTAATGCAAGTCATGGA
GAAAATGGTGGAGAGAGCTGCAGTTGAGCAAGTCTCTGCTAAACTTGATA
CCATTGGCACCTTCTTTCACGACTTGGTTCTTCGACTTCCGACAGCAGCA
GTATCTGGTCCAAATTTAATGACAGTACGAAAAATAGCGAAGCTTCTCGA
CACCCACGCTAGTCATGAAATTAATCTGGACACGCATTTATTGAGAGAAA
TCCGTGAAGTTATGTCTGCAGAGCGGCCAAACGGAGCGGTGACATTGCTT
CTTGGGTCAACATATTCCCGTGACTTCTTAGCCGAACAAGTCGTGTACGG
ATTGATAACTAGAAGGGGTCCCATTAACGACTTCACAGACGGCAACATAT
TGAAATCTGCCGCAGCTCATCTAAAAGCAGATCCATACATTGAAGATCTT
ACGTTTTTAAACATTTGCAACATGAAAACCGGAACATTGTTATCAGGGTC
CAGCTCTGTGACGGATGCCGAACTTGAAGAACCATTTCAGCTCTTTTTCC
AACTCATGATGGATGAAATTCATTTGGAAATCACCCACTTTCAGGATTCA
TACTACTCCGCTAATGAAATGCTCCCGAACACACGGCTTGTCGAGGCTGT
GCAGAAGGGAAGGTTACAAAGAAGAGTACTCACGTCTTACTGCCTTCAGC
AATACATCCATGGGAATTTAGTTGCCCTATCTCGGTACAGATTACTCTTG
GAAGATGTTCTACGTGCCGCGGATAACGTTACGGAACCACGAGAAGTAAC
GCTAGCATACCAACTAATCATTAAGATTATTGGTCCGTAA

protein sequence of Gchil4298.t1

>Gchil4298.t1 ID=Gchil4298.t1|Name=Gchil4298.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=480bp
MEQALNPKVYQIGYAGKDAVKECFENRDYEIEKVVDFIMEFKNLRGLQFE
TTPLRLLKKGGFAPSRTLSDVLRIVIDRMKRDVASLPHDKLDCLLEKSFT
YLTVPHLASVPIATLEHLNVVDPNIWKQIVDNGLNDSPYTDLPLSIKKRI
WSFEPKALDHEIDALIDSLPEMGTPENVDDFASKLDRHRMRSTSAKLNEL
LRMLEGMGENEVMQVMEKMVERAAVEQVSAKLDTIGTFFHDLVLRLPTAA
VSGPNLMTVRKIAKLLDTHASHEINLDTHLLREIREVMSAERPNGAVTLL
LGSTYSRDFLAEQVVYGLITRRGPINDFTDGNILKSAAAHLKADPYIEDL
TFLNICNMKTGTLLSGSSSVTDAELEEPFQLFFQLMMDEIHLEITHFQDS
YYSANEMLPNTRLVEAVQKGRLQRRVLTSYCLQQYIHGNLVALSRYRLLL
EDVLRAADNVTEPREVTLAYQLIIKIIGP*

mRNA from alignment at tig00004373_pilon:1961260..1962699+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4298.t1 ID=Gchil4298.t1|Name=Gchil4298.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00004373_pilon:1961260..1962699+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAACAAGCTCTAAACCCAAAAGTTTATCAAATTGGTTATGCGGGGAA
AGATGCCGTCAAAGAATGCTTCGAAAACCGGGACTATGAGATAGAAAAAG
TTGTTGACTTCATCATGGAGTTCAAAAATTTGAGAGGGTTGCAGTTTGAA
ACTACTCCTCTAAGGCTTTTGAAGAAGGGCGGATTCGCTCCCAGTCGCAC
GTTAAGTGACGTTCTCAGGATTGTCATAGACAGGATGAAGCGAGACGTTG
CTTCACTTCCACACGATAAGCTGGATTGTTTATTGGAAAAAAGCTTCACC
TATCTCACAGTCCCACATCTCGCATCAGTTCCGATTGCCACACTGGAACA
CCTAAATGTTGTTGACCCGAACATATGGAAACAAATAGTTGACAACGGGC
TGAATGACTCCCCATATACAGATCTCCCTCTTTCTATTAAGAAAAGAATA
TGGTCATTCGAGCCTAAAGCATTGGACCATGAAATAGACGCTTTAATTGA
TAGTTTACCAGAAATGGGCACCCCTGAAAATGTGGATGACTTTGCTTCTA
AGCTTGATCGACACAGAATGCGTTCAACAAGCGCTAAGCTTAATGAATTG
CTTCGGATGCTGGAAGGAATGGGTGAAAATGAAGTAATGCAAGTCATGGA
GAAAATGGTGGAGAGAGCTGCAGTTGAGCAAGTCTCTGCTAAACTTGATA
CCATTGGCACCTTCTTTCACGACTTGGTTCTTCGACTTCCGACAGCAGCA
GTATCTGGTCCAAATTTAATGACAGTACGAAAAATAGCGAAGCTTCTCGA
CACCCACGCTAGTCATGAAATTAATCTGGACACGCATTTATTGAGAGAAA
TCCGTGAAGTTATGTCTGCAGAGCGGCCAAACGGAGCGGTGACATTGCTT
CTTGGGTCAACATATTCCCGTGACTTCTTAGCCGAACAAGTCGTGTACGG
ATTGATAACTAGAAGGGGTCCCATTAACGACTTCACAGACGGCAACATAT
TGAAATCTGCCGCAGCTCATCTAAAAGCAGATCCATACATTGAAGATCTT
ACGTTTTTAAACATTTGCAACATGAAAACCGGAACATTGTTATCAGGGTC
CAGCTCTGTGACGGATGCCGAACTTGAAGAACCATTTCAGCTCTTTTTCC
AACTCATGATGGATGAAATTCATTTGGAAATCACCCACTTTCAGGATTCA
TACTACTCCGCTAATGAAATGCTCCCGAACACACGGCTTGTCGAGGCTGT
GCAGAAGGGAAGGTTACAAAGAAGAGTACTCACGTCTTACTGCCTTCAGC
AATACATCCATGGGAATTTAGTTGCCCTATCTCGGTACAGATTACTCTTG
GAAGATGTTCTACGTGCCGCGGATAACGTTACGGAACCACGAGAAGTAAC
GCTAGCATACCAACTAATCATTAAGATTATTGGTCCGTAA

Coding sequence (CDS) from alignment at tig00004373_pilon:1961260..1962699+

>Gchil4298.t1 ID=Gchil4298.t1|Name=Gchil4298.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00004373_pilon:1961260..1962699+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAACAAGCTCTAAACCCAAAAGTTTATCAAATTGGTTATGCGGGGAA
AGATGCCGTCAAAGAATGCTTCGAAAACCGGGACTATGAGATAGAAAAAG
TTGTTGACTTCATCATGGAGTTCAAAAATTTGAGAGGGTTGCAGTTTGAA
ACTACTCCTCTAAGGCTTTTGAAGAAGGGCGGATTCGCTCCCAGTCGCAC
GTTAAGTGACGTTCTCAGGATTGTCATAGACAGGATGAAGCGAGACGTTG
CTTCACTTCCACACGATAAGCTGGATTGTTTATTGGAAAAAAGCTTCACC
TATCTCACAGTCCCACATCTCGCATCAGTTCCGATTGCCACACTGGAACA
CCTAAATGTTGTTGACCCGAACATATGGAAACAAATAGTTGACAACGGGC
TGAATGACTCCCCATATACAGATCTCCCTCTTTCTATTAAGAAAAGAATA
TGGTCATTCGAGCCTAAAGCATTGGACCATGAAATAGACGCTTTAATTGA
TAGTTTACCAGAAATGGGCACCCCTGAAAATGTGGATGACTTTGCTTCTA
AGCTTGATCGACACAGAATGCGTTCAACAAGCGCTAAGCTTAATGAATTG
CTTCGGATGCTGGAAGGAATGGGTGAAAATGAAGTAATGCAAGTCATGGA
GAAAATGGTGGAGAGAGCTGCAGTTGAGCAAGTCTCTGCTAAACTTGATA
CCATTGGCACCTTCTTTCACGACTTGGTTCTTCGACTTCCGACAGCAGCA
GTATCTGGTCCAAATTTAATGACAGTACGAAAAATAGCGAAGCTTCTCGA
CACCCACGCTAGTCATGAAATTAATCTGGACACGCATTTATTGAGAGAAA
TCCGTGAAGTTATGTCTGCAGAGCGGCCAAACGGAGCGGTGACATTGCTT
CTTGGGTCAACATATTCCCGTGACTTCTTAGCCGAACAAGTCGTGTACGG
ATTGATAACTAGAAGGGGTCCCATTAACGACTTCACAGACGGCAACATAT
TGAAATCTGCCGCAGCTCATCTAAAAGCAGATCCATACATTGAAGATCTT
ACGTTTTTAAACATTTGCAACATGAAAACCGGAACATTGTTATCAGGGTC
CAGCTCTGTGACGGATGCCGAACTTGAAGAACCATTTCAGCTCTTTTTCC
AACTCATGATGGATGAAATTCATTTGGAAATCACCCACTTTCAGGATTCA
TACTACTCCGCTAATGAAATGCTCCCGAACACACGGCTTGTCGAGGCTGT
GCAGAAGGGAAGGTTACAAAGAAGAGTACTCACGTCTTACTGCCTTCAGC
AATACATCCATGGGAATTTAGTTGCCCTATCTCGGTACAGATTACTCTTG
GAAGATGTTCTACGTGCCGCGGATAACGTTACGGAACCACGAGAAGTAAC
GCTAGCATACCAACTAATCATTAAGATTATTGGTCCGTAA