Gchil4268.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4268.t1
Unique NameGchil4268.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length537
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1756561..1758171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4268Gchil4268Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1756561..1758171 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4268.t1.start1Gchil4268.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1756561..1756563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4268.t1.CDS1Gchil4268.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1756561..1758171 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4268.t1.exon1Gchil4268.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1756561..1758171 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4268.t1.stop1Gchil4268.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1758169..1758171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4268.t1Gchil4268.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1756561..1758171 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4268.t1 ID=Gchil4268.t1|Name=Gchil4268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=537bp
MAQRLPLLRWSRALSQTKCVTLYRNFLCSYSTKSSESCENTNIFDARNSL
TEEAERLLKEDTMTISENAQRVLEILKTAVSQNSPRAKTLLGSLFREGII
VEKNRDEALRLFNEAAEQGDPTAQCSLGAFKLQVVKEKMVEGMHDTVKHT
DFTVDINERGEARGMLHVESKGGGPVDAATPAELVRRVRKARRKAGFTDE
QAREFEEFKIRKEEEAMAAERQDAISWLERAVQQDNVEAFVILGNEILQE
DPKRAIDLYEAAVQRGRNVDAYYNLGQIYTRGLGSVAPNAKAALKNFAMA
AQLGDSSAQFYLGHLYKVGSEEIKLDLASARQYIEMAAAQDHPGALYNLA
LMHKDGEGGLEISHGAFLRYVNQAANLDHGPAHVCLAELYYTGSNGIDVD
YKKALYHFLAAGRLGEAEAYCSAAAMHFHGFGTDEDQHQAFLLYQKAAEF
GSTKAFRNIGSMYFHGHGIPSNKNVAEHFFRVADERESASRKSDEVHLQK
PVASTEAPKHPMADVPRPNKESRDSELVTPDPSVPI*
back to top

spliced messenger RNA

>Gchil4268.t1 ID=Gchil4268.t1|Name=Gchil4268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00004373_pilon:1756561..1758171+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAGCGCCTCCCATTGCTTCGATGGAGCCGTGCTCTAAGCCAGAC
GAAATGTGTGACTCTCTATAGAAATTTTTTATGTTCTTATTCAACCAAGT
CTTCCGAGTCGTGTGAAAATACTAACATCTTTGATGCCCGCAACTCCTTG
ACTGAGGAGGCCGAAAGGTTGCTTAAGGAAGATACAATGACCATCTCTGA
AAATGCTCAAAGAGTTCTAGAAATTCTAAAGACGGCAGTTTCCCAAAACA
GTCCGCGTGCAAAAACTCTTTTGGGATCTTTGTTCCGAGAAGGGATAATT
GTGGAAAAAAACAGAGATGAAGCTCTTCGTCTGTTCAATGAAGCTGCAGA
ACAGGGAGACCCTACAGCTCAATGCAGCCTAGGAGCTTTCAAATTACAGG
TTGTAAAGGAAAAAATGGTGGAGGGAATGCATGATACAGTGAAACATACT
GATTTCACTGTCGATATTAACGAGCGTGGTGAGGCTCGCGGAATGCTGCA
TGTAGAGTCAAAAGGAGGGGGACCTGTCGATGCTGCTACGCCGGCCGAGC
TTGTGCGAAGAGTTAGAAAGGCGAGGCGGAAGGCTGGGTTCACAGACGAA
CAGGCTCGTGAATTTGAAGAGTTCAAGATACGGAAAGAAGAAGAAGCAAT
GGCAGCAGAACGTCAGGACGCAATTTCTTGGCTAGAGCGGGCAGTCCAGC
AAGACAACGTCGAAGCATTTGTTATCCTTGGAAACGAGATCTTGCAAGAA
GATCCGAAGCGTGCAATTGATTTGTATGAAGCCGCTGTTCAGAGGGGACG
TAATGTGGACGCTTACTACAACCTCGGTCAAATATACACAAGAGGTTTGG
GAAGTGTAGCGCCTAACGCAAAAGCCGCGCTCAAAAACTTCGCGATGGCC
GCGCAGCTCGGCGACTCTAGTGCCCAGTTTTACCTCGGCCATCTTTACAA
AGTCGGTTCAGAGGAAATCAAGCTTGATCTTGCCTCCGCTCGCCAGTATA
TCGAAATGGCGGCGGCTCAAGACCATCCAGGAGCGCTTTATAACCTCGCT
CTCATGCATAAAGACGGCGAAGGAGGGTTGGAAATCAGCCATGGTGCTTT
TCTTCGATATGTTAATCAAGCTGCAAATCTTGATCATGGTCCTGCTCATG
TGTGCCTAGCAGAATTGTACTACACCGGATCGAACGGTATAGATGTCGAT
TACAAAAAGGCACTGTATCATTTTCTAGCTGCCGGTCGTCTGGGTGAAGC
AGAAGCGTATTGTTCTGCTGCCGCGATGCATTTCCATGGGTTTGGCACTG
ATGAGGATCAACATCAGGCCTTCCTGCTGTACCAAAAGGCAGCAGAATTT
GGAAGCACTAAGGCTTTTCGAAATATCGGATCCATGTATTTCCATGGACA
TGGGATTCCTTCAAACAAAAATGTTGCAGAACACTTCTTTAGAGTAGCAG
ATGAAAGGGAATCTGCAAGTCGCAAGTCTGATGAGGTTCATTTGCAGAAA
CCAGTTGCAAGCACAGAAGCACCGAAGCATCCCATGGCCGATGTGCCACG
ACCAAATAAGGAGTCTAGAGACTCGGAGCTAGTGACTCCTGACCCTTCAG
TACCAATCTAA
back to top

protein sequence of Gchil4268.t1

>Gchil4268.t1 ID=Gchil4268.t1|Name=Gchil4268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=537bp
MAQRLPLLRWSRALSQTKCVTLYRNFLCSYSTKSSESCENTNIFDARNSL
TEEAERLLKEDTMTISENAQRVLEILKTAVSQNSPRAKTLLGSLFREGII
VEKNRDEALRLFNEAAEQGDPTAQCSLGAFKLQVVKEKMVEGMHDTVKHT
DFTVDINERGEARGMLHVESKGGGPVDAATPAELVRRVRKARRKAGFTDE
QAREFEEFKIRKEEEAMAAERQDAISWLERAVQQDNVEAFVILGNEILQE
DPKRAIDLYEAAVQRGRNVDAYYNLGQIYTRGLGSVAPNAKAALKNFAMA
AQLGDSSAQFYLGHLYKVGSEEIKLDLASARQYIEMAAAQDHPGALYNLA
LMHKDGEGGLEISHGAFLRYVNQAANLDHGPAHVCLAELYYTGSNGIDVD
YKKALYHFLAAGRLGEAEAYCSAAAMHFHGFGTDEDQHQAFLLYQKAAEF
GSTKAFRNIGSMYFHGHGIPSNKNVAEHFFRVADERESASRKSDEVHLQK
PVASTEAPKHPMADVPRPNKESRDSELVTPDPSVPI*
back to top

mRNA from alignment at tig00004373_pilon:1756561..1758171+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4268.t1 ID=Gchil4268.t1|Name=Gchil4268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00004373_pilon:1756561..1758171+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCAGCGCCTCCCATTGCTTCGATGGAGCCGTGCTCTAAGCCAGAC
GAAATGTGTGACTCTCTATAGAAATTTTTTATGTTCTTATTCAACCAAGT
CTTCCGAGTCGTGTGAAAATACTAACATCTTTGATGCCCGCAACTCCTTG
ACTGAGGAGGCCGAAAGGTTGCTTAAGGAAGATACAATGACCATCTCTGA
AAATGCTCAAAGAGTTCTAGAAATTCTAAAGACGGCAGTTTCCCAAAACA
GTCCGCGTGCAAAAACTCTTTTGGGATCTTTGTTCCGAGAAGGGATAATT
GTGGAAAAAAACAGAGATGAAGCTCTTCGTCTGTTCAATGAAGCTGCAGA
ACAGGGAGACCCTACAGCTCAATGCAGCCTAGGAGCTTTCAAATTACAGG
TTGTAAAGGAAAAAATGGTGGAGGGAATGCATGATACAGTGAAACATACT
GATTTCACTGTCGATATTAACGAGCGTGGTGAGGCTCGCGGAATGCTGCA
TGTAGAGTCAAAAGGAGGGGGACCTGTCGATGCTGCTACGCCGGCCGAGC
TTGTGCGAAGAGTTAGAAAGGCGAGGCGGAAGGCTGGGTTCACAGACGAA
CAGGCTCGTGAATTTGAAGAGTTCAAGATACGGAAAGAAGAAGAAGCAAT
GGCAGCAGAACGTCAGGACGCAATTTCTTGGCTAGAGCGGGCAGTCCAGC
AAGACAACGTCGAAGCATTTGTTATCCTTGGAAACGAGATCTTGCAAGAA
GATCCGAAGCGTGCAATTGATTTGTATGAAGCCGCTGTTCAGAGGGGACG
TAATGTGGACGCTTACTACAACCTCGGTCAAATATACACAAGAGGTTTGG
GAAGTGTAGCGCCTAACGCAAAAGCCGCGCTCAAAAACTTCGCGATGGCC
GCGCAGCTCGGCGACTCTAGTGCCCAGTTTTACCTCGGCCATCTTTACAA
AGTCGGTTCAGAGGAAATCAAGCTTGATCTTGCCTCCGCTCGCCAGTATA
TCGAAATGGCGGCGGCTCAAGACCATCCAGGAGCGCTTTATAACCTCGCT
CTCATGCATAAAGACGGCGAAGGAGGGTTGGAAATCAGCCATGGTGCTTT
TCTTCGATATGTTAATCAAGCTGCAAATCTTGATCATGGTCCTGCTCATG
TGTGCCTAGCAGAATTGTACTACACCGGATCGAACGGTATAGATGTCGAT
TACAAAAAGGCACTGTATCATTTTCTAGCTGCCGGTCGTCTGGGTGAAGC
AGAAGCGTATTGTTCTGCTGCCGCGATGCATTTCCATGGGTTTGGCACTG
ATGAGGATCAACATCAGGCCTTCCTGCTGTACCAAAAGGCAGCAGAATTT
GGAAGCACTAAGGCTTTTCGAAATATCGGATCCATGTATTTCCATGGACA
TGGGATTCCTTCAAACAAAAATGTTGCAGAACACTTCTTTAGAGTAGCAG
ATGAAAGGGAATCTGCAAGTCGCAAGTCTGATGAGGTTCATTTGCAGAAA
CCAGTTGCAAGCACAGAAGCACCGAAGCATCCCATGGCCGATGTGCCACG
ACCAAATAAGGAGTCTAGAGACTCGGAGCTAGTGACTCCTGACCCTTCAG
TACCAATCTAA
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:1756561..1758171+

>Gchil4268.t1 ID=Gchil4268.t1|Name=Gchil4268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1611bp|location=Sequence derived from alignment at tig00004373_pilon:1756561..1758171+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCAGCGCCTCCCATTGCTTCGATGGAGCCGTGCTCTAAGCCAGAC
GAAATGTGTGACTCTCTATAGAAATTTTTTATGTTCTTATTCAACCAAGT
CTTCCGAGTCGTGTGAAAATACTAACATCTTTGATGCCCGCAACTCCTTG
ACTGAGGAGGCCGAAAGGTTGCTTAAGGAAGATACAATGACCATCTCTGA
AAATGCTCAAAGAGTTCTAGAAATTCTAAAGACGGCAGTTTCCCAAAACA
GTCCGCGTGCAAAAACTCTTTTGGGATCTTTGTTCCGAGAAGGGATAATT
GTGGAAAAAAACAGAGATGAAGCTCTTCGTCTGTTCAATGAAGCTGCAGA
ACAGGGAGACCCTACAGCTCAATGCAGCCTAGGAGCTTTCAAATTACAGG
TTGTAAAGGAAAAAATGGTGGAGGGAATGCATGATACAGTGAAACATACT
GATTTCACTGTCGATATTAACGAGCGTGGTGAGGCTCGCGGAATGCTGCA
TGTAGAGTCAAAAGGAGGGGGACCTGTCGATGCTGCTACGCCGGCCGAGC
TTGTGCGAAGAGTTAGAAAGGCGAGGCGGAAGGCTGGGTTCACAGACGAA
CAGGCTCGTGAATTTGAAGAGTTCAAGATACGGAAAGAAGAAGAAGCAAT
GGCAGCAGAACGTCAGGACGCAATTTCTTGGCTAGAGCGGGCAGTCCAGC
AAGACAACGTCGAAGCATTTGTTATCCTTGGAAACGAGATCTTGCAAGAA
GATCCGAAGCGTGCAATTGATTTGTATGAAGCCGCTGTTCAGAGGGGACG
TAATGTGGACGCTTACTACAACCTCGGTCAAATATACACAAGAGGTTTGG
GAAGTGTAGCGCCTAACGCAAAAGCCGCGCTCAAAAACTTCGCGATGGCC
GCGCAGCTCGGCGACTCTAGTGCCCAGTTTTACCTCGGCCATCTTTACAA
AGTCGGTTCAGAGGAAATCAAGCTTGATCTTGCCTCCGCTCGCCAGTATA
TCGAAATGGCGGCGGCTCAAGACCATCCAGGAGCGCTTTATAACCTCGCT
CTCATGCATAAAGACGGCGAAGGAGGGTTGGAAATCAGCCATGGTGCTTT
TCTTCGATATGTTAATCAAGCTGCAAATCTTGATCATGGTCCTGCTCATG
TGTGCCTAGCAGAATTGTACTACACCGGATCGAACGGTATAGATGTCGAT
TACAAAAAGGCACTGTATCATTTTCTAGCTGCCGGTCGTCTGGGTGAAGC
AGAAGCGTATTGTTCTGCTGCCGCGATGCATTTCCATGGGTTTGGCACTG
ATGAGGATCAACATCAGGCCTTCCTGCTGTACCAAAAGGCAGCAGAATTT
GGAAGCACTAAGGCTTTTCGAAATATCGGATCCATGTATTTCCATGGACA
TGGGATTCCTTCAAACAAAAATGTTGCAGAACACTTCTTTAGAGTAGCAG
ATGAAAGGGAATCTGCAAGTCGCAAGTCTGATGAGGTTCATTTGCAGAAA
CCAGTTGCAAGCACAGAAGCACCGAAGCATCCCATGGCCGATGTGCCACG
ACCAAATAAGGAGTCTAGAGACTCGGAGCTAGTGACTCCTGACCCTTCAG
TACCAATCTAA
back to top