Gchil4263.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4263.t1
Unique NameGchil4263.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1690548..1691153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3983.cassava4.1_019632m
PFAMsTBCA
Max annot lvl35493|Streptophyta
KEGG koko:K17292
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue1.86e-11
EggNOG OGsKOG3470@1|root,KOG3470@2759|Eukaryota,37VCE@33090|Viridiplantae,3GJQ2@35493|Streptophyta,4JQ00@91835|fabids
DescriptionBelongs to the TBCA family
COG categoryZ
BRITEko00000,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4263Gchil4263Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1690548..1691153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4263.t1Gchil4263.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1690548..1691153 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4263.t1.start1Gchil4263.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1690548..1690550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4263.t1.CDS1Gchil4263.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1690548..1690609 +
Gchil4263.t1.CDS2Gchil4263.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1690691..1690793 +
Gchil4263.t1.CDS3Gchil4263.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1690880..1690966 +
Gchil4263.t1.CDS4Gchil4263.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1691058..1691153 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4263.t1.exon1Gchil4263.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1690548..1690609 +
Gchil4263.t1.exon2Gchil4263.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1690691..1690793 +
Gchil4263.t1.exon3Gchil4263.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1690880..1690966 +
Gchil4263.t1.exon4Gchil4263.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1691058..1691153 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4263.t1.intron1Gchil4263.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1690610..1690690 +
Gchil4263.t1.intron2Gchil4263.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1690794..1690879 +
Gchil4263.t1.intron3Gchil4263.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1690967..1691057 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4263.t1.stop1Gchil4263.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1691151..1691153 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4263.t1 ID=Gchil4263.t1|Name=Gchil4263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=116bp
MASESHPSLRTLKIKTAVVQRITKELDSYYEELEGNRKKVEQIRCSNDHS
KLKQMENVLGETQCMIPDTTTRLSNAVDDLSALLNDPDIKTRLDGTKELE
SATAAVSTASQKLQG*
back to top

spliced messenger RNA

>Gchil4263.t1 ID=Gchil4263.t1|Name=Gchil4263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=348bp|location=Sequence derived from alignment at tig00004373_pilon:1690548..1691153+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCTGAATCGCACCCCTCACTTCGAACCCTCAAGATCAAGACTGC
AGTCGTACAGAGAATCACCAAGGAATTAGACTCCTACTACGAAGAGCTCG
AGGGCAATAGGAAAAAAGTTGAACAAATTCGTTGCAGCAATGACCATTCA
AAACTGAAGCAAATGGAAAACGTGTTGGGAGAAACACAGTGCATGATACC
AGATACCACTACTCGACTTTCGAATGCTGTCGATGACCTATCAGCGTTGT
TGAACGACCCAGATATCAAGACCAGGTTAGACGGTACAAAAGAACTAGAA
TCAGCTACAGCTGCTGTGTCTACGGCCTCTCAAAAGTTGCAAGGTTAG
back to top

protein sequence of Gchil4263.t1

>Gchil4263.t1 ID=Gchil4263.t1|Name=Gchil4263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=116bp
MASESHPSLRTLKIKTAVVQRITKELDSYYEELEGNRKKVEQIRCSNDHS
KLKQMENVLGETQCMIPDTTTRLSNAVDDLSALLNDPDIKTRLDGTKELE
SATAAVSTASQKLQG*
back to top

mRNA from alignment at tig00004373_pilon:1690548..1691153+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4263.t1 ID=Gchil4263.t1|Name=Gchil4263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00004373_pilon:1690548..1691153+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCATCTGAATCGCACCCCTCACTTCGAACCCTCAAGATCAAGACTGC
AGTCGTACAGAGGTATGTAATCATTCTCATTGCTAGCTTCTTTCTATTAT
GCACCCTCCGCGCATTTCTAACCCTTCAACACTGTCACCACAGAATCACC
AAGGAATTAGACTCCTACTACGAAGAGCTCGAGGGCAATAGGAAAAAAGT
TGAACAAATTCGTTGCAGCAATGACCATTCAAAACTGAAGCAAATGGTCA
GTCACACCCTTCTGCATCTTAGCGCACCTTTTCTCGCGACTAACGCGTAT
TCAAACTTATTCTCTCATTGGAGTTTCCCCAGGAAAACGTGTTGGGAGAA
ACACAGTGCATGATACCAGATACCACTACTCGACTTTCGAATGCTGTCGA
TGACCTATCAGCGTTGTTGGTACGTTCATGCCAACCAATCTCACATCAAG
TACTCAAATAATTCTCTCACACGCGCTCTTTTCATTATTCCGCGATAAAC
TCGAAAACAGAACGACCCAGATATCAAGACCAGGTTAGACGGTACAAAAG
AACTAGAATCAGCTACAGCTGCTGTGTCTACGGCCTCTCAAAAGTTGCAA
GGTTAG
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:1690548..1691153+

>Gchil4263.t1 ID=Gchil4263.t1|Name=Gchil4263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=348bp|location=Sequence derived from alignment at tig00004373_pilon:1690548..1691153+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCATCTGAATCGCACCCCTCACTTCGAACCCTCAAGATCAAGACTGC
AGTCGTACAGAGAATCACCAAGGAATTAGACTCCTACTACGAAGAGCTCG
AGGGCAATAGGAAAAAAGTTGAACAAATTCGTTGCAGCAATGACCATTCA
AAACTGAAGCAAATGGAAAACGTGTTGGGAGAAACACAGTGCATGATACC
AGATACCACTACTCGACTTTCGAATGCTGTCGATGACCTATCAGCGTTGT
TGAACGACCCAGATATCAAGACCAGGTTAGACGGTACAAAAGAACTAGAA
TCAGCTACAGCTGCTGTGTCTACGGCCTCTCAAAAGTTGCAAGGTTAG
back to top