Gchil4122.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4122.t1
Unique Name	Gchil4122.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	674

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:875410..877431 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	199306.XP_003071455.1
PFAMs	GAGA,zf-C2H2
Max annot lvl	4751\|Fungi
KEGG ko	ko:K09191
GOs	GO:0000182,GO:0000995,GO:0001016,GO:0001030,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006359,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080084,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903506,GO:1990837,GO:2000112,GO:2001141
Evalue	9.73e-07
EggNOG OGs	KOG1721@1\|root,KOG1721@2759\|Eukaryota,39CGA@33154\|Opisthokonta,3NVT7@4751\|Fungi,3QRUF@4890\|Ascomycota,20CNW@147545\|Eurotiomycetes,3B0AX@33183\|Onygenales,3FJQ2@34383\|Onygenales incertae sedis
Description	GAGA factor
COG category	S
BRITE	ko00000,ko03000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4122	Gchil4122	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 875410..877431 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4122.t1.stop1	Gchil4122.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 875410..875412 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4122.t1.CDS1	Gchil4122.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 875410..877431 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4122.t1.exon1	Gchil4122.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 875410..877431 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4122.t1.start1	Gchil4122.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 877429..877431 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4122.t1	Gchil4122.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 875410..877431 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:875410..877431-
coding sequence from alignment at tig00004373_pilon:875410..877431-

mRNA sequence

>Gchil4122.t1 ID=Gchil4122.t1|Name=Gchil4122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=674bp
MRTHTGERPHQCLFPLCGKSFLRKDHLTRHQYSHKQERPFPCTFPQCDKS
FATAQRLSRHRNLHNKPHPFKCDLCDQSFLKPHALDLHRATHAHSEPLTY
ACDAPNCQSVFSQHVRLQRHKAKCHTRTFTCVADNCTAPAFQTYSDLTRH
VRIVHEPRPVYQCKLCARQVRSAPALARHVAACETGSLVREHRCGYPHCG
AVYSSSGNLGTHIRSKHTNPGGFFCDSCDRRFSLKSSMERHKRTVHPPSS
NHSCFVCHTTLLSADHLRTHLAERHNVQQTTSPTPLILNKPPPLILESPL
HPSSVEHPYVPDRNPQPVINHANARPDANHPYAESDKLVNISEPPPPGMS
LRVPAQSASFSITQQHKPQLIGERPNVTQCPPISDLRMSLAMDSSIFDQR
MRHERSVEHAVNPLQPNSGFSATEGSPAAKRRCLNPDVTVPSSAALEGKL
SENVMHINPNDVNSYGPFHNSLRVWENNAQSSLRLPGQTDKHENTRHNVS
PSAISTLFPRDESTPTVSPQSCVMDYGRVQGMEETNSIRQAVSDQRHNCS
QQETRVQADCSEANEHAYRTQPPATCGFTNQSKTPPLALGSPNPTLQDLF
VAGSAPAGTYYGDSRDIAPQDSVPVNHNVPQEATPQRGPLAEESREPAPP
PLVNNSEERSADRVGFRVMTARA*

spliced messenger RNA

>Gchil4122.t1 ID=Gchil4122.t1|Name=Gchil4122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2022bp|location=Sequence derived from alignment at tig00004373_pilon:875410..877431- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGACCCACACCGGTGAACGTCCTCATCAATGTCTTTTCCCCTTGTG
TGGCAAATCCTTTCTCCGCAAAGATCATTTGACGCGTCATCAATATTCCC
ATAAACAAGAGCGTCCTTTTCCCTGCACCTTTCCGCAATGCGACAAATCC
TTCGCTACCGCTCAACGCCTCAGTCGTCATCGCAACCTGCATAACAAGCC
TCATCCATTCAAATGCGACTTGTGCGATCAATCTTTTCTAAAACCACATG
CCCTCGATCTTCACCGCGCCACACATGCCCATTCCGAACCACTCACATAC
GCCTGCGATGCCCCCAACTGCCAATCCGTCTTCTCCCAACACGTTCGTCT
ACAGAGACACAAGGCAAAATGTCATACGCGCACCTTTACTTGTGTGGCCG
ACAACTGCACCGCACCTGCCTTTCAAACCTACTCCGACCTCACCCGTCAC
GTGCGCATTGTTCACGAGCCACGCCCCGTCTACCAGTGCAAGTTATGTGC
GCGTCAGGTACGAAGCGCCCCGGCTTTGGCGAGGCATGTCGCCGCCTGTG
AAACCGGCTCGCTGGTCCGCGAGCATCGTTGTGGCTATCCGCACTGCGGA
GCCGTGTATTCTTCTTCGGGCAATCTTGGAACCCACATTCGATCCAAGCA
CACCAACCCGGGTGGCTTTTTCTGTGATTCTTGTGACAGGCGCTTTTCTT
TGAAGAGTTCCATGGAGCGACATAAGCGCACCGTGCATCCACCCTCCAGC
AATCATTCATGTTTTGTTTGTCACACTACGCTTCTCAGTGCAGACCACTT
GAGAACGCACTTGGCGGAGCGTCATAACGTGCAGCAGACTACTTCACCAA
CGCCTCTGATCCTCAATAAGCCACCGCCTTTGATTCTCGAGTCCCCATTG
CATCCTTCATCCGTTGAACACCCCTATGTGCCGGATCGAAACCCACAGCC
AGTTATCAATCATGCCAATGCGCGCCCAGATGCCAACCACCCCTATGCTG
AGAGTGATAAGCTTGTCAACATATCCGAGCCACCTCCTCCGGGTATGTCC
TTGCGCGTTCCTGCCCAATCTGCTTCATTTTCAATCACTCAGCAACATAA
ACCGCAGCTCATTGGAGAACGCCCAAATGTCACCCAATGTCCGCCTATTT
CCGACCTTCGCATGAGTCTTGCCATGGACAGCTCGATCTTCGACCAACGG
ATGCGGCATGAGCGAAGCGTCGAACATGCCGTCAATCCGCTTCAGCCAAA
CTCGGGCTTTTCGGCCACAGAAGGCTCCCCAGCCGCGAAACGCCGATGTT
TGAATCCAGATGTGACTGTCCCCTCCTCAGCAGCTCTCGAAGGAAAGCTC
TCAGAAAACGTTATGCACATCAACCCGAATGACGTGAATAGCTATGGTCC
GTTTCACAACTCGCTCCGCGTCTGGGAGAATAATGCTCAGTCCAGTCTAA
GGCTACCCGGCCAAACAGATAAGCACGAAAACACTCGCCACAATGTATCG
CCAAGCGCCATCAGCACTTTGTTTCCTCGAGACGAGAGCACACCCACCGT
GTCTCCGCAGAGTTGTGTAATGGACTATGGCCGAGTGCAGGGAATGGAAG
AAACGAATAGTATCAGGCAAGCAGTGTCAGACCAGAGACACAACTGTTCG
CAACAAGAAACGCGAGTACAAGCTGATTGTAGTGAGGCTAATGAGCATGC
GTATAGGACCCAGCCGCCAGCCACTTGCGGGTTTACAAACCAGAGCAAAA
CACCACCTCTAGCGCTAGGATCACCTAATCCCACGCTGCAGGACCTCTTT
GTCGCCGGCAGCGCACCTGCAGGAACGTACTATGGTGATTCTAGAGATAT
TGCCCCTCAAGACTCGGTGCCTGTGAACCACAATGTTCCCCAGGAAGCCA
CTCCTCAACGAGGTCCCCTTGCGGAAGAATCAAGAGAACCTGCACCACCA
CCACTTGTCAATAATTCGGAGGAAAGAAGTGCTGACCGCGTCGGTTTTCG
AGTGATGACTGCTCGAGCATAG

protein sequence of Gchil4122.t1

>Gchil4122.t1 ID=Gchil4122.t1|Name=Gchil4122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=674bp
MRTHTGERPHQCLFPLCGKSFLRKDHLTRHQYSHKQERPFPCTFPQCDKS
FATAQRLSRHRNLHNKPHPFKCDLCDQSFLKPHALDLHRATHAHSEPLTY
ACDAPNCQSVFSQHVRLQRHKAKCHTRTFTCVADNCTAPAFQTYSDLTRH
VRIVHEPRPVYQCKLCARQVRSAPALARHVAACETGSLVREHRCGYPHCG
AVYSSSGNLGTHIRSKHTNPGGFFCDSCDRRFSLKSSMERHKRTVHPPSS
NHSCFVCHTTLLSADHLRTHLAERHNVQQTTSPTPLILNKPPPLILESPL
HPSSVEHPYVPDRNPQPVINHANARPDANHPYAESDKLVNISEPPPPGMS
LRVPAQSASFSITQQHKPQLIGERPNVTQCPPISDLRMSLAMDSSIFDQR
MRHERSVEHAVNPLQPNSGFSATEGSPAAKRRCLNPDVTVPSSAALEGKL
SENVMHINPNDVNSYGPFHNSLRVWENNAQSSLRLPGQTDKHENTRHNVS
PSAISTLFPRDESTPTVSPQSCVMDYGRVQGMEETNSIRQAVSDQRHNCS
QQETRVQADCSEANEHAYRTQPPATCGFTNQSKTPPLALGSPNPTLQDLF
VAGSAPAGTYYGDSRDIAPQDSVPVNHNVPQEATPQRGPLAEESREPAPP
PLVNNSEERSADRVGFRVMTARA*

mRNA from alignment at tig00004373_pilon:875410..877431-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4122.t1 ID=Gchil4122.t1|Name=Gchil4122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2022bp|location=Sequence derived from alignment at tig00004373_pilon:875410..877431- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGACCCACACCGGTGAACGTCCTCATCAATGTCTTTTCCCCTTGTG
TGGCAAATCCTTTCTCCGCAAAGATCATTTGACGCGTCATCAATATTCCC
ATAAACAAGAGCGTCCTTTTCCCTGCACCTTTCCGCAATGCGACAAATCC
TTCGCTACCGCTCAACGCCTCAGTCGTCATCGCAACCTGCATAACAAGCC
TCATCCATTCAAATGCGACTTGTGCGATCAATCTTTTCTAAAACCACATG
CCCTCGATCTTCACCGCGCCACACATGCCCATTCCGAACCACTCACATAC
GCCTGCGATGCCCCCAACTGCCAATCCGTCTTCTCCCAACACGTTCGTCT
ACAGAGACACAAGGCAAAATGTCATACGCGCACCTTTACTTGTGTGGCCG
ACAACTGCACCGCACCTGCCTTTCAAACCTACTCCGACCTCACCCGTCAC
GTGCGCATTGTTCACGAGCCACGCCCCGTCTACCAGTGCAAGTTATGTGC
GCGTCAGGTACGAAGCGCCCCGGCTTTGGCGAGGCATGTCGCCGCCTGTG
AAACCGGCTCGCTGGTCCGCGAGCATCGTTGTGGCTATCCGCACTGCGGA
GCCGTGTATTCTTCTTCGGGCAATCTTGGAACCCACATTCGATCCAAGCA
CACCAACCCGGGTGGCTTTTTCTGTGATTCTTGTGACAGGCGCTTTTCTT
TGAAGAGTTCCATGGAGCGACATAAGCGCACCGTGCATCCACCCTCCAGC
AATCATTCATGTTTTGTTTGTCACACTACGCTTCTCAGTGCAGACCACTT
GAGAACGCACTTGGCGGAGCGTCATAACGTGCAGCAGACTACTTCACCAA
CGCCTCTGATCCTCAATAAGCCACCGCCTTTGATTCTCGAGTCCCCATTG
CATCCTTCATCCGTTGAACACCCCTATGTGCCGGATCGAAACCCACAGCC
AGTTATCAATCATGCCAATGCGCGCCCAGATGCCAACCACCCCTATGCTG
AGAGTGATAAGCTTGTCAACATATCCGAGCCACCTCCTCCGGGTATGTCC
TTGCGCGTTCCTGCCCAATCTGCTTCATTTTCAATCACTCAGCAACATAA
ACCGCAGCTCATTGGAGAACGCCCAAATGTCACCCAATGTCCGCCTATTT
CCGACCTTCGCATGAGTCTTGCCATGGACAGCTCGATCTTCGACCAACGG
ATGCGGCATGAGCGAAGCGTCGAACATGCCGTCAATCCGCTTCAGCCAAA
CTCGGGCTTTTCGGCCACAGAAGGCTCCCCAGCCGCGAAACGCCGATGTT
TGAATCCAGATGTGACTGTCCCCTCCTCAGCAGCTCTCGAAGGAAAGCTC
TCAGAAAACGTTATGCACATCAACCCGAATGACGTGAATAGCTATGGTCC
GTTTCACAACTCGCTCCGCGTCTGGGAGAATAATGCTCAGTCCAGTCTAA
GGCTACCCGGCCAAACAGATAAGCACGAAAACACTCGCCACAATGTATCG
CCAAGCGCCATCAGCACTTTGTTTCCTCGAGACGAGAGCACACCCACCGT
GTCTCCGCAGAGTTGTGTAATGGACTATGGCCGAGTGCAGGGAATGGAAG
AAACGAATAGTATCAGGCAAGCAGTGTCAGACCAGAGACACAACTGTTCG
CAACAAGAAACGCGAGTACAAGCTGATTGTAGTGAGGCTAATGAGCATGC
GTATAGGACCCAGCCGCCAGCCACTTGCGGGTTTACAAACCAGAGCAAAA
CACCACCTCTAGCGCTAGGATCACCTAATCCCACGCTGCAGGACCTCTTT
GTCGCCGGCAGCGCACCTGCAGGAACGTACTATGGTGATTCTAGAGATAT
TGCCCCTCAAGACTCGGTGCCTGTGAACCACAATGTTCCCCAGGAAGCCA
CTCCTCAACGAGGTCCCCTTGCGGAAGAATCAAGAGAACCTGCACCACCA
CCACTTGTCAATAATTCGGAGGAAAGAAGTGCTGACCGCGTCGGTTTTCG
AGTGATGACTGCTCGAGCATAG

Coding sequence (CDS) from alignment at tig00004373_pilon:875410..877431-

>Gchil4122.t1 ID=Gchil4122.t1|Name=Gchil4122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2022bp|location=Sequence derived from alignment at tig00004373_pilon:875410..877431- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGACCCACACCGGTGAACGTCCTCATCAATGTCTTTTCCCCTTGTG
TGGCAAATCCTTTCTCCGCAAAGATCATTTGACGCGTCATCAATATTCCC
ATAAACAAGAGCGTCCTTTTCCCTGCACCTTTCCGCAATGCGACAAATCC
TTCGCTACCGCTCAACGCCTCAGTCGTCATCGCAACCTGCATAACAAGCC
TCATCCATTCAAATGCGACTTGTGCGATCAATCTTTTCTAAAACCACATG
CCCTCGATCTTCACCGCGCCACACATGCCCATTCCGAACCACTCACATAC
GCCTGCGATGCCCCCAACTGCCAATCCGTCTTCTCCCAACACGTTCGTCT
ACAGAGACACAAGGCAAAATGTCATACGCGCACCTTTACTTGTGTGGCCG
ACAACTGCACCGCACCTGCCTTTCAAACCTACTCCGACCTCACCCGTCAC
GTGCGCATTGTTCACGAGCCACGCCCCGTCTACCAGTGCAAGTTATGTGC
GCGTCAGGTACGAAGCGCCCCGGCTTTGGCGAGGCATGTCGCCGCCTGTG
AAACCGGCTCGCTGGTCCGCGAGCATCGTTGTGGCTATCCGCACTGCGGA
GCCGTGTATTCTTCTTCGGGCAATCTTGGAACCCACATTCGATCCAAGCA
CACCAACCCGGGTGGCTTTTTCTGTGATTCTTGTGACAGGCGCTTTTCTT
TGAAGAGTTCCATGGAGCGACATAAGCGCACCGTGCATCCACCCTCCAGC
AATCATTCATGTTTTGTTTGTCACACTACGCTTCTCAGTGCAGACCACTT
GAGAACGCACTTGGCGGAGCGTCATAACGTGCAGCAGACTACTTCACCAA
CGCCTCTGATCCTCAATAAGCCACCGCCTTTGATTCTCGAGTCCCCATTG
CATCCTTCATCCGTTGAACACCCCTATGTGCCGGATCGAAACCCACAGCC
AGTTATCAATCATGCCAATGCGCGCCCAGATGCCAACCACCCCTATGCTG
AGAGTGATAAGCTTGTCAACATATCCGAGCCACCTCCTCCGGGTATGTCC
TTGCGCGTTCCTGCCCAATCTGCTTCATTTTCAATCACTCAGCAACATAA
ACCGCAGCTCATTGGAGAACGCCCAAATGTCACCCAATGTCCGCCTATTT
CCGACCTTCGCATGAGTCTTGCCATGGACAGCTCGATCTTCGACCAACGG
ATGCGGCATGAGCGAAGCGTCGAACATGCCGTCAATCCGCTTCAGCCAAA
CTCGGGCTTTTCGGCCACAGAAGGCTCCCCAGCCGCGAAACGCCGATGTT
TGAATCCAGATGTGACTGTCCCCTCCTCAGCAGCTCTCGAAGGAAAGCTC
TCAGAAAACGTTATGCACATCAACCCGAATGACGTGAATAGCTATGGTCC
GTTTCACAACTCGCTCCGCGTCTGGGAGAATAATGCTCAGTCCAGTCTAA
GGCTACCCGGCCAAACAGATAAGCACGAAAACACTCGCCACAATGTATCG
CCAAGCGCCATCAGCACTTTGTTTCCTCGAGACGAGAGCACACCCACCGT
GTCTCCGCAGAGTTGTGTAATGGACTATGGCCGAGTGCAGGGAATGGAAG
AAACGAATAGTATCAGGCAAGCAGTGTCAGACCAGAGACACAACTGTTCG
CAACAAGAAACGCGAGTACAAGCTGATTGTAGTGAGGCTAATGAGCATGC
GTATAGGACCCAGCCGCCAGCCACTTGCGGGTTTACAAACCAGAGCAAAA
CACCACCTCTAGCGCTAGGATCACCTAATCCCACGCTGCAGGACCTCTTT
GTCGCCGGCAGCGCACCTGCAGGAACGTACTATGGTGATTCTAGAGATAT
TGCCCCTCAAGACTCGGTGCCTGTGAACCACAATGTTCCCCAGGAAGCCA
CTCCTCAACGAGGTCCCCTTGCGGAAGAATCAAGAGAACCTGCACCACCA
CCACTTGTCAATAATTCGGAGGAAAGAAGTGCTGACCGCGTCGGTTTTCG
AGTGATGACTGCTCGAGCATAG