Gchil4113.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4113.t1
Unique NameGchil4113.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length84
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:852696..853053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4113Gchil4113Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 852696..853053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4113.t1Gchil4113.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 852696..853053 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4113.t1.stop1Gchil4113.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 852696..852698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4113.t1.CDS1Gchil4113.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 852696..852752 -
Gchil4113.t1.CDS2Gchil4113.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 852859..853053 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4113.t1.exon1Gchil4113.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 852696..852752 -
Gchil4113.t1.exon2Gchil4113.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 852859..853053 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4113.t1.intron1Gchil4113.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 852753..852858 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4113.t1.start1Gchil4113.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 853051..853053 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4113.t1 ID=Gchil4113.t1|Name=Gchil4113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=84bp
MKLPKLKLPTIITTREGTGQKEIIGLTPGEWVKSTVALCVLYAILAGFFA
VLLVIAQTIRNKGDYYVIPGTDDLGVDFENEDE*
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spliced messenger RNA

>Gchil4113.t1 ID=Gchil4113.t1|Name=Gchil4113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=252bp|location=Sequence derived from alignment at tig00004373_pilon:852696..853053- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTGCCGAAACTCAAGCTGCCCACTATTATCACCACCCGCGAGGG
TACTGGCCAGAAGGAGATCATTGGACTTACCCCGGGTGAGTGGGTCAAGT
CCACCGTAGCACTCTGCGTCCTCTACGCCATCCTGGCCGGCTTTTTCGCC
GTTCTCCTCGTCATTGCTCAGACCATTCGCAACAAAGGAGACTACTATGT
CATCCCCGGAACCGATGACCTCGGTGTCGACTTCGAAAATGAAGACGAAT
AA
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protein sequence of Gchil4113.t1

>Gchil4113.t1 ID=Gchil4113.t1|Name=Gchil4113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=84bp
MKLPKLKLPTIITTREGTGQKEIIGLTPGEWVKSTVALCVLYAILAGFFA
VLLVIAQTIRNKGDYYVIPGTDDLGVDFENEDE*
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mRNA from alignment at tig00004373_pilon:852696..853053-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4113.t1 ID=Gchil4113.t1|Name=Gchil4113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=358bp|location=Sequence derived from alignment at tig00004373_pilon:852696..853053- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGTTGCCGAAACTCAAGCTGCCCACTATTATCACCACCCGCGAGGG
TACTGGCCAGAAGGAGATCATTGGACTTACCCCGGGTGAGTGGGTCAAGT
CCACCGTAGCACTCTGCGTCCTCTACGCCATCCTGGCCGGCTTTTTCGCC
GTTCTCCTCGTCATTGCTCAGACCATTCGCAACAAAGGAGACTACGTAAG
TTTCATTCCCCCTCTTCTGCTTCGAATCCGCCACAACCGTCTGTGCTAAC
CTGTGTTCCGTCCTCGCCTCCGCCTCCGTTTGCATCCCTCCCTCTCTGCA
GTATGTCATCCCCGGAACCGATGACCTCGGTGTCGACTTCGAAAATGAAG
ACGAATAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:852696..853053-

>Gchil4113.t1 ID=Gchil4113.t1|Name=Gchil4113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=252bp|location=Sequence derived from alignment at tig00004373_pilon:852696..853053- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGTTGCCGAAACTCAAGCTGCCCACTATTATCACCACCCGCGAGGG
TACTGGCCAGAAGGAGATCATTGGACTTACCCCGGGTGAGTGGGTCAAGT
CCACCGTAGCACTCTGCGTCCTCTACGCCATCCTGGCCGGCTTTTTCGCC
GTTCTCCTCGTCATTGCTCAGACCATTCGCAACAAAGGAGACTACTATGT
CATCCCCGGAACCGATGACCTCGGTGTCGACTTCGAAAATGAAGACGAAT
AA
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