Gchil4061.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4061.t1
Unique Name	Gchil4061.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	623

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:297878..299746 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMB028CT
PFAMs	Bromodomain
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K22184
Evalue	6.88e-15
EggNOG OGs	COG5141@1\|root,KOG0955@2759\|Eukaryota
Description	chromatin organization
COG category	P
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4061	Gchil4061	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 297878..299746 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4061.t1.start1	Gchil4061.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 297878..297880 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4061.t1.CDS1	Gchil4061.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 297878..299746 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4061.t1.exon1	Gchil4061.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 297878..299746 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4061.t1.stop1	Gchil4061.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 299744..299746 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4061.t1	Gchil4061.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 297878..299746 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:297878..299746+
coding sequence from alignment at tig00004373_pilon:297878..299746+

mRNA sequence

>Gchil4061.t1 ID=Gchil4061.t1|Name=Gchil4061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=623bp
MAPSRPPRAPARVLRDPKELLKRRGADLLRKISDRDRYGIFLQPVDVDAI
DGYAQLIARPMDLATCQNNLAMGVYRTPMELRADLDLIWSNCCTFNADNS
IYFKEAVRLRALAARYYDDLIRALVKDGVAAALGLSRGGGGGPSSSARLP
PRRPPRPRSTDLSARLQSPSLLHSDMHSVDADADTQSASASASAAHASSR
DVHLRRARASYDAAVAAAASATHEARQAAHNAGLPDAPPSNEEPIFNGPN
NELRDASSSQYDAPFPRKFSVLQSERIRDSCTQIPLAWRRIGRWHWRGAT
QPPILSEERARNVRYGLQFERFVTESAPMARRLLATVLDAHVVQQHDVAL
LEKGWSSGAGVVHAAEPGYRKKSAAPTANGMHGDGRKNGVTDAMDVQREE
TATKANGDGRTPKSRKRPRSNHETSLVNGDYTNRNGGAFAGQLKELIGHK
RLKQVAAQRVEELYQSSLSVPPKQSIYRVRSLLRAKGIDPKFVSSLMTDD
PVSYNAPSVGETHNNGTQDVMSTSHQRKIDMLLHSNYEIMMNVLRLRALR
ENCAESTVESVEDKERDSVERLADGLALAVRSLPPRLVVHSVDAAESALM
MAETIAGRQSAGAGGDGGGADA*

spliced messenger RNA

>Gchil4061.t1 ID=Gchil4061.t1|Name=Gchil4061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1869bp|location=Sequence derived from alignment at tig00004373_pilon:297878..299746+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGTCGCGTCCACCCCGCGCGCCGGCGCGCGTCCTGCGCGACCC
TAAGGAGCTTCTCAAGAGGCGCGGTGCCGACCTGCTGCGAAAGATTTCCG
ACCGCGATCGCTACGGCATCTTCCTGCAGCCCGTCGACGTCGACGCCATC
GACGGCTATGCGCAGCTCATCGCGCGTCCCATGGACCTGGCCACATGCCA
GAACAACCTCGCCATGGGCGTGTATCGCACGCCCATGGAGCTCCGCGCAG
ACCTCGACCTCATCTGGTCCAACTGCTGTACCTTCAACGCCGACAACTCC
ATCTATTTCAAGGAGGCCGTTCGTCTACGCGCCCTCGCCGCGCGTTACTA
CGACGACCTTATTCGCGCACTCGTCAAGGACGGCGTCGCCGCAGCGCTGG
GTCTTTCTCGCGGCGGCGGCGGCGGCCCCTCCTCCTCGGCCCGCCTCCCG
CCGCGCCGCCCGCCGCGCCCGCGCTCCACCGACCTTTCCGCTCGTCTGCA
GTCGCCTTCGCTGCTGCATTCTGACATGCACTCCGTCGACGCCGACGCCG
ACACGCAGTCCGCCTCCGCCAGCGCTTCGGCTGCGCATGCTTCGTCGCGC
GACGTGCATCTGCGACGGGCGCGCGCCAGTTACGACgccgcagtcgcagc
cgctgcctccgccacgcacgaagcgcgccaggccgcaCACAATGCTGGTT
TACCGGATGCACCTCCTTCCAATGAAGAGCCAATCTTCAACGGTCCCAAC
AACGAGCTTCGCGACGCGTCGTCCTCGCAGTACGACGCACCTTTTCCGCG
CAAGTTCTCCGTGCTACAGAGTGAACGAATTCGCGACAGCTGCACACAGA
TTCCGCTTGCTTGGCGGAGAATCGGGCGGTGGCACTGGCGTGGGGCCACG
CAGCCACCCATTCTTTCGGAGGAGCGCGCGCGCAATGTGCGGTATGGGTT
GCAGTTTGAACGCTTCGTGACGGAGTCCGCGCCCATGGCGCGGCGCTTGC
TGGCGACTGTTCTTGATGCCCACGTCGTCCAGCAGCATGATGTTGCTCTG
TTGGAAAAGGGCTGGTCCTCGGGCGCCGGCGTTGTGCACGCTGCTGAGCC
CGGGTATAGAAAGAAGTCAGCCGCACCCACAGCGAACGGGATGCATGGCG
ATGGAAGGAAGAATGGGGTGACGGATGCGATGGATGTACAGAGAGAAGAA
ACAGCGACGAAAGCAAACGGTGACGGCAGGACGCCCAAATCTAGAAAGCG
TCCGCGCAGCAACCACGAGACGAGCTTGGTGAACGGCGATTACACGAATC
GCAACGGTGGCGCGTTTGCCGGGCAGCTCAAGGAATTGATTGGACACAAG
AGACTGAAGCAAGTTGCAGCACAGCGCGTCGAGGAGCTGTACCAATCCAG
CCTGTCGGTGCCGCCGAAACAGTCCATCTACCGCGTGCGCTCGTTGCTAC
GGGCCAAGGGAATCGACCCCAAATTCGTGAGCTCGCTCATGACGGACGAT
CCCGTGAGTTACAATGCACCCTCGGTAGGCGAGACGCACAACAACGGCAC
ACAAGACGTGATGTCCACGTCGCACCAGCGAAAGATAGACATGCTGCTCC
ACAGCAACTACGAAATCATGATGAACGTGCTGCGGTTGCGCGCGCTGAGG
GAGAACTGTGCGGAGAGCACGGTGGAAAGCGTTGAGGATAAGGAGCGCGA
TAGTGTAGAGAGACTGGCAGATGGATTGGCTTTGGCTGTGCGTAGCTTGC
CGCCGCGCTTGGTGGTGCACTCGGTGGACGCGGCGGAAAGTGCGCTGATG
ATGGCGGAGACAATCGCCGGTAGGCAATCGGCTGGCGCCGGCGGTGACGG
TGGCGGCGCCGACGCATAG

protein sequence of Gchil4061.t1

>Gchil4061.t1 ID=Gchil4061.t1|Name=Gchil4061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=623bp
MAPSRPPRAPARVLRDPKELLKRRGADLLRKISDRDRYGIFLQPVDVDAI
DGYAQLIARPMDLATCQNNLAMGVYRTPMELRADLDLIWSNCCTFNADNS
IYFKEAVRLRALAARYYDDLIRALVKDGVAAALGLSRGGGGGPSSSARLP
PRRPPRPRSTDLSARLQSPSLLHSDMHSVDADADTQSASASASAAHASSR
DVHLRRARASYDAAVAAAASATHEARQAAHNAGLPDAPPSNEEPIFNGPN
NELRDASSSQYDAPFPRKFSVLQSERIRDSCTQIPLAWRRIGRWHWRGAT
QPPILSEERARNVRYGLQFERFVTESAPMARRLLATVLDAHVVQQHDVAL
LEKGWSSGAGVVHAAEPGYRKKSAAPTANGMHGDGRKNGVTDAMDVQREE
TATKANGDGRTPKSRKRPRSNHETSLVNGDYTNRNGGAFAGQLKELIGHK
RLKQVAAQRVEELYQSSLSVPPKQSIYRVRSLLRAKGIDPKFVSSLMTDD
PVSYNAPSVGETHNNGTQDVMSTSHQRKIDMLLHSNYEIMMNVLRLRALR
ENCAESTVESVEDKERDSVERLADGLALAVRSLPPRLVVHSVDAAESALM
MAETIAGRQSAGAGGDGGGADA*

mRNA from alignment at tig00004373_pilon:297878..299746+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4061.t1 ID=Gchil4061.t1|Name=Gchil4061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1869bp|location=Sequence derived from alignment at tig00004373_pilon:297878..299746+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGTCGCGTCCACCCCGCGCGCCGGCGCGCGTCCTGCGCGACCC
TAAGGAGCTTCTCAAGAGGCGCGGTGCCGACCTGCTGCGAAAGATTTCCG
ACCGCGATCGCTACGGCATCTTCCTGCAGCCCGTCGACGTCGACGCCATC
GACGGCTATGCGCAGCTCATCGCGCGTCCCATGGACCTGGCCACATGCCA
GAACAACCTCGCCATGGGCGTGTATCGCACGCCCATGGAGCTCCGCGCAG
ACCTCGACCTCATCTGGTCCAACTGCTGTACCTTCAACGCCGACAACTCC
ATCTATTTCAAGGAGGCCGTTCGTCTACGCGCCCTCGCCGCGCGTTACTA
CGACGACCTTATTCGCGCACTCGTCAAGGACGGCGTCGCCGCAGCGCTGG
GTCTTTCTCGCGGCGGCGGCGGCGGCCCCTCCTCCTCGGCCCGCCTCCCG
CCGCGCCGCCCGCCGCGCCCGCGCTCCACCGACCTTTCCGCTCGTCTGCA
GTCGCCTTCGCTGCTGCATTCTGACATGCACTCCGTCGACGCCGACGCCG
ACACGCAGTCCGCCTCCGCCAGCGCTTCGGCTGCGCATGCTTCGTCGCGC
GACGTGCATCTGCGACGGGCGCGCGCCAGTTACGACgccgcagtcgcagc
cgctgcctccgccacgcacgaagcgcgccaggccgcaCACAATGCTGGTT
TACCGGATGCACCTCCTTCCAATGAAGAGCCAATCTTCAACGGTCCCAAC
AACGAGCTTCGCGACGCGTCGTCCTCGCAGTACGACGCACCTTTTCCGCG
CAAGTTCTCCGTGCTACAGAGTGAACGAATTCGCGACAGCTGCACACAGA
TTCCGCTTGCTTGGCGGAGAATCGGGCGGTGGCACTGGCGTGGGGCCACG
CAGCCACCCATTCTTTCGGAGGAGCGCGCGCGCAATGTGCGGTATGGGTT
GCAGTTTGAACGCTTCGTGACGGAGTCCGCGCCCATGGCGCGGCGCTTGC
TGGCGACTGTTCTTGATGCCCACGTCGTCCAGCAGCATGATGTTGCTCTG
TTGGAAAAGGGCTGGTCCTCGGGCGCCGGCGTTGTGCACGCTGCTGAGCC
CGGGTATAGAAAGAAGTCAGCCGCACCCACAGCGAACGGGATGCATGGCG
ATGGAAGGAAGAATGGGGTGACGGATGCGATGGATGTACAGAGAGAAGAA
ACAGCGACGAAAGCAAACGGTGACGGCAGGACGCCCAAATCTAGAAAGCG
TCCGCGCAGCAACCACGAGACGAGCTTGGTGAACGGCGATTACACGAATC
GCAACGGTGGCGCGTTTGCCGGGCAGCTCAAGGAATTGATTGGACACAAG
AGACTGAAGCAAGTTGCAGCACAGCGCGTCGAGGAGCTGTACCAATCCAG
CCTGTCGGTGCCGCCGAAACAGTCCATCTACCGCGTGCGCTCGTTGCTAC
GGGCCAAGGGAATCGACCCCAAATTCGTGAGCTCGCTCATGACGGACGAT
CCCGTGAGTTACAATGCACCCTCGGTAGGCGAGACGCACAACAACGGCAC
ACAAGACGTGATGTCCACGTCGCACCAGCGAAAGATAGACATGCTGCTCC
ACAGCAACTACGAAATCATGATGAACGTGCTGCGGTTGCGCGCGCTGAGG
GAGAACTGTGCGGAGAGCACGGTGGAAAGCGTTGAGGATAAGGAGCGCGA
TAGTGTAGAGAGACTGGCAGATGGATTGGCTTTGGCTGTGCGTAGCTTGC
CGCCGCGCTTGGTGGTGCACTCGGTGGACGCGGCGGAAAGTGCGCTGATG
ATGGCGGAGACAATCGCCGGTAGGCAATCGGCTGGCGCCGGCGGTGACGG
TGGCGGCGCCGACGCATAG

Coding sequence (CDS) from alignment at tig00004373_pilon:297878..299746+

>Gchil4061.t1 ID=Gchil4061.t1|Name=Gchil4061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1869bp|location=Sequence derived from alignment at tig00004373_pilon:297878..299746+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGTCGCGTCCACCCCGCGCGCCGGCGCGCGTCCTGCGCGACCC
TAAGGAGCTTCTCAAGAGGCGCGGTGCCGACCTGCTGCGAAAGATTTCCG
ACCGCGATCGCTACGGCATCTTCCTGCAGCCCGTCGACGTCGACGCCATC
GACGGCTATGCGCAGCTCATCGCGCGTCCCATGGACCTGGCCACATGCCA
GAACAACCTCGCCATGGGCGTGTATCGCACGCCCATGGAGCTCCGCGCAG
ACCTCGACCTCATCTGGTCCAACTGCTGTACCTTCAACGCCGACAACTCC
ATCTATTTCAAGGAGGCCGTTCGTCTACGCGCCCTCGCCGCGCGTTACTA
CGACGACCTTATTCGCGCACTCGTCAAGGACGGCGTCGCCGCAGCGCTGG
GTCTTTCTCGCGGCGGCGGCGGCGGCCCCTCCTCCTCGGCCCGCCTCCCG
CCGCGCCGCCCGCCGCGCCCGCGCTCCACCGACCTTTCCGCTCGTCTGCA
GTCGCCTTCGCTGCTGCATTCTGACATGCACTCCGTCGACGCCGACGCCG
ACACGCAGTCCGCCTCCGCCAGCGCTTCGGCTGCGCATGCTTCGTCGCGC
GACGTGCATCTGCGACGGGCGCGCGCCAGTTACGACgccgcagtcgcagc
cgctgcctccgccacgcacgaagcgcgccaggccgcaCACAATGCTGGTT
TACCGGATGCACCTCCTTCCAATGAAGAGCCAATCTTCAACGGTCCCAAC
AACGAGCTTCGCGACGCGTCGTCCTCGCAGTACGACGCACCTTTTCCGCG
CAAGTTCTCCGTGCTACAGAGTGAACGAATTCGCGACAGCTGCACACAGA
TTCCGCTTGCTTGGCGGAGAATCGGGCGGTGGCACTGGCGTGGGGCCACG
CAGCCACCCATTCTTTCGGAGGAGCGCGCGCGCAATGTGCGGTATGGGTT
GCAGTTTGAACGCTTCGTGACGGAGTCCGCGCCCATGGCGCGGCGCTTGC
TGGCGACTGTTCTTGATGCCCACGTCGTCCAGCAGCATGATGTTGCTCTG
TTGGAAAAGGGCTGGTCCTCGGGCGCCGGCGTTGTGCACGCTGCTGAGCC
CGGGTATAGAAAGAAGTCAGCCGCACCCACAGCGAACGGGATGCATGGCG
ATGGAAGGAAGAATGGGGTGACGGATGCGATGGATGTACAGAGAGAAGAA
ACAGCGACGAAAGCAAACGGTGACGGCAGGACGCCCAAATCTAGAAAGCG
TCCGCGCAGCAACCACGAGACGAGCTTGGTGAACGGCGATTACACGAATC
GCAACGGTGGCGCGTTTGCCGGGCAGCTCAAGGAATTGATTGGACACAAG
AGACTGAAGCAAGTTGCAGCACAGCGCGTCGAGGAGCTGTACCAATCCAG
CCTGTCGGTGCCGCCGAAACAGTCCATCTACCGCGTGCGCTCGTTGCTAC
GGGCCAAGGGAATCGACCCCAAATTCGTGAGCTCGCTCATGACGGACGAT
CCCGTGAGTTACAATGCACCCTCGGTAGGCGAGACGCACAACAACGGCAC
ACAAGACGTGATGTCCACGTCGCACCAGCGAAAGATAGACATGCTGCTCC
ACAGCAACTACGAAATCATGATGAACGTGCTGCGGTTGCGCGCGCTGAGG
GAGAACTGTGCGGAGAGCACGGTGGAAAGCGTTGAGGATAAGGAGCGCGA
TAGTGTAGAGAGACTGGCAGATGGATTGGCTTTGGCTGTGCGTAGCTTGC
CGCCGCGCTTGGTGGTGCACTCGGTGGACGCGGCGGAAAGTGCGCTGATG
ATGGCGGAGACAATCGCCGGTAGGCAATCGGCTGGCGCCGGCGGTGACGG
TGGCGGCGCCGACGCATAG