Gchil4043.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4043.t1
Unique NameGchil4043.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:218872..219426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog41875.XP_007515814.1
PFAMsMRP_L53
Max annot lvl3041|Chlorophyta
KEGG koko:K17434
Evalue1.04e-06
EggNOG OGs2E4RK@1|root,2SBKM@2759|Eukaryota,37XVK@33090|Viridiplantae,34IQY@3041|Chlorophyta
Description39S ribosomal protein L53/MRP-L53
COG categoryS
BRITEbr01610,ko00000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4043Gchil4043Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 218872..219426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4043.t1Gchil4043.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 218872..219426 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4043.t1.start1Gchil4043.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 218872..218874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4043.t1.CDS1Gchil4043.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 218872..218987 +
Gchil4043.t1.CDS2Gchil4043.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 219072..219184 +
Gchil4043.t1.CDS3Gchil4043.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 219272..219426 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4043.t1.exon1Gchil4043.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 218872..218987 +
Gchil4043.t1.exon2Gchil4043.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 219072..219184 +
Gchil4043.t1.exon3Gchil4043.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 219272..219426 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4043.t1.intron1Gchil4043.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 218988..219071 +
Gchil4043.t1.intron2Gchil4043.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 219185..219271 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4043.t1.stop1Gchil4043.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 219424..219426 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4043.t1 ID=Gchil4043.t1|Name=Gchil4043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=128bp
MGQLVRSLAAARQAKELFKTLQKVTVTANPFDYRSTTAREFLRRVRTPPV
KRSNPKLLTELTITEEYGNPTIELLYGDGFQQKIQTSGLKIMDIMDEVER
VARWKGEGVHNPFEELREKRAKILGLK*
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spliced messenger RNA

>Gchil4043.t1 ID=Gchil4043.t1|Name=Gchil4043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=384bp|location=Sequence derived from alignment at tig00004373_pilon:218872..219426+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACAGCTGGTACGTTCGTTGGCTGCGGCTCGTCAAGCCAAGGAACT
GTTTAAAACATTGCAAAAAGTTACTGTGACTGCCAATCCTTTTGATTATC
GCTCGACTACGGCCAGAGAATTCTTAAGACGAGTGCGTACACCCCCTGTA
AAAAGATCCAATCCAAAGTTGCTGACCGAGCTAACGATCACGGAAGAGTA
TGGCAACCCTACGATAGAGTTGCTGTATGGTGATGGATTCCAACAGAAAA
TCCAAACAAGCGGGTTAAAAATCATGGACATTATGGATGAGGTTGAACGG
GTGGCGCGATGGAAAGGCGAAGGTGTGCATAACCCATTTGAGGAGCTGAG
AGAAAAACGTGCAAAGATTCTTGGCCTCAAGTGA
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protein sequence of Gchil4043.t1

>Gchil4043.t1 ID=Gchil4043.t1|Name=Gchil4043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=128bp
MGQLVRSLAAARQAKELFKTLQKVTVTANPFDYRSTTAREFLRRVRTPPV
KRSNPKLLTELTITEEYGNPTIELLYGDGFQQKIQTSGLKIMDIMDEVER
VARWKGEGVHNPFEELREKRAKILGLK*
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mRNA from alignment at tig00004373_pilon:218872..219426+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4043.t1 ID=Gchil4043.t1|Name=Gchil4043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00004373_pilon:218872..219426+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGACAGCTGGTACGTTCGTTGGCTGCGGCTCGTCAAGCCAAGGAACT
GTTTAAAACATTGCAAAAAGTTACTGTGACTGCCAATCCTTTTGATTATC
GCTCGACTACGGCCAGGTAAGGATGATGATTTCGGCGGACAACTGTTCAT
GTTCTTCCCTGAATCATTTCTAACCATGATCAACCAAAACGCCTTCGAAG
AGAATTCTTAAGACGAGTGCGTACACCCCCTGTAAAAAGATCCAATCCAA
AGTTGCTGACCGAGCTAACGATCACGGAAGAGTATGGCAACCCTACGATA
GAGTTGCTGTATGGTACGTATTGTGCTGTACTTGATCCATTTGGTCAACG
TTCATTTCTACTAACTTATCATACCTTGCTTCGAATAAATCACTTGGTAG
GTGATGGATTCCAACAGAAAATCCAAACAAGCGGGTTAAAAATCATGGAC
ATTATGGATGAGGTTGAACGGGTGGCGCGATGGAAAGGCGAAGGTGTGCA
TAACCCATTTGAGGAGCTGAGAGAAAAACGTGCAAAGATTCTTGGCCTCA
AGTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:218872..219426+

>Gchil4043.t1 ID=Gchil4043.t1|Name=Gchil4043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=384bp|location=Sequence derived from alignment at tig00004373_pilon:218872..219426+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGACAGCTGGTACGTTCGTTGGCTGCGGCTCGTCAAGCCAAGGAACT
GTTTAAAACATTGCAAAAAGTTACTGTGACTGCCAATCCTTTTGATTATC
GCTCGACTACGGCCAGAGAATTCTTAAGACGAGTGCGTACACCCCCTGTA
AAAAGATCCAATCCAAAGTTGCTGACCGAGCTAACGATCACGGAAGAGTA
TGGCAACCCTACGATAGAGTTGCTGTATGGTGATGGATTCCAACAGAAAA
TCCAAACAAGCGGGTTAAAAATCATGGACATTATGGATGAGGTTGAACGG
GTGGCGCGATGGAAAGGCGAAGGTGTGCATAACCCATTTGAGGAGCTGAG
AGAAAAACGTGCAAAGATTCTTGGCCTCAAGTGA
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