Gchil4030.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4030.t1
Unique NameGchil4030.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:135680..136633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4432.XP_010242370.1
PFAMsDUF1664
Max annot lvl35493|Streptophyta
Evalue3.77e-14
EggNOG OGs28J9H@1|root,2QRN8@2759|Eukaryota,37SJR@33090|Viridiplantae,3G7GZ@35493|Streptophyta
DescriptionProtein of unknown function (DUF1664)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4030Gchil4030Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 135680..136633 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4030.t1.stop1Gchil4030.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 135680..135682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4030.t1.CDS1Gchil4030.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 135680..136633 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4030.t1.exon1Gchil4030.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 135680..136633 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4030.t1.start1Gchil4030.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 136631..136633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4030.t1Gchil4030.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 135680..136633 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4030.t1 ID=Gchil4030.t1|Name=Gchil4030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=318bp
MAALGVRSLALLFGAGFSGSYLYNHLDKARSIAARILREVEQNAGDGSKS
DTAVHADVATSNLDSTPHLNELSRQLASLSREVNRSRSDQLLIMPSYKGS
LGTITDIFNLIGWGVAAVSIGGVMYYVAYRKKFRLTDLAWVSQSTFTGTV
EAMQKGITRVSGALGAVKREITLRLREVEGRVDGVKLALADQIDRDVGAV
KEGVAEVGDEVAGVKNALGDVNERIDQLDNKIDFATSGIVALVKALSSVA
PERIKPGSPFYDLRKFADLSDTNSANSGMLRHRLSAGGLRGLLTGEGGGD
NEVVGKRRSMDLKSTVS*
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spliced messenger RNA

>Gchil4030.t1 ID=Gchil4030.t1|Name=Gchil4030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00004373_pilon:135680..136633- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGCTTGGGGTCCGTTCGCTCGCGCTGCTCTTCGGCGCCGGCTT
CTCTGGCTCCTACTTGTACAACCATCTCGACAAAGCGCGCTCCATCGCTG
CAAGAATCCTGCGCGAAGTGGAGCAAAACGCGGGTGACGGGTCAAAGTCA
GACACAGCTGTGCATGCAGACGTGGCGACGTCGAATCTCGATTCGACGCC
TCACTTAAATGAGCTTTCGCGGCAGTTGGCTTCGCTGTCACGCGAGGTAA
ACCGCTCGCGCAGTGACCAGTTGCTTATCATGCCTTCATACAAGGGCTCG
CTTGGCACTATCACCGACATTTTTAACTTGATCGGATGGGGAGTCGCGGC
AGTTTCGATAGGTGGGGTTATGTACTATGTAGCGTACCGGAAGAAGTTCA
GGTTGACGGATTTAGCCTGGGTGAGCCAGAGCACGTTTACGGGCACCGTG
GAAGCCATGCAGAAGGGCATAACGCGAGTGAGCGGCGCGTTAGGGGCGGT
TAAGAGGGAAATTACACTCCGGCTGCGCGAGGTAGAAGGGCGTGTCGACG
GGGTAAAGCTCGCGCTGGCGGACCAAATCGACCGTGATGTGGGTGCGGTG
AAAGAGGGGGTGGCTGAGGTAGGTGACGAAGTTGCTGGAGTAAAGAACGC
GTTGGGAGATGTGAACGAGAGAATCGATCAGCTAGACAACAAGATTGACT
TCGCTACGAGCGGCATTGTGGCCCTGGTCAAGGCTTTGTCAAGTGTAGCT
CCGGAACGCATTAAGCCAGGATCTCCGTTCTACGATTTGAGGAAGTTTGC
TGATTTGTCGGACACTAATTCTGCAAATTCCGGGATGCTGCGGCATCGCT
TATCAGCTGGCGGACTGCGGGGGCTGCTGACAGGTGAAGGAGGTGGGGAC
AACGAAGTTGTAGGGAAAAGAAGATCGATGGATTTAAAGAGCACAGTTTC
GTAA
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protein sequence of Gchil4030.t1

>Gchil4030.t1 ID=Gchil4030.t1|Name=Gchil4030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=318bp
MAALGVRSLALLFGAGFSGSYLYNHLDKARSIAARILREVEQNAGDGSKS
DTAVHADVATSNLDSTPHLNELSRQLASLSREVNRSRSDQLLIMPSYKGS
LGTITDIFNLIGWGVAAVSIGGVMYYVAYRKKFRLTDLAWVSQSTFTGTV
EAMQKGITRVSGALGAVKREITLRLREVEGRVDGVKLALADQIDRDVGAV
KEGVAEVGDEVAGVKNALGDVNERIDQLDNKIDFATSGIVALVKALSSVA
PERIKPGSPFYDLRKFADLSDTNSANSGMLRHRLSAGGLRGLLTGEGGGD
NEVVGKRRSMDLKSTVS*
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mRNA from alignment at tig00004373_pilon:135680..136633-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4030.t1 ID=Gchil4030.t1|Name=Gchil4030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00004373_pilon:135680..136633- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCGCTTGGGGTCCGTTCGCTCGCGCTGCTCTTCGGCGCCGGCTT
CTCTGGCTCCTACTTGTACAACCATCTCGACAAAGCGCGCTCCATCGCTG
CAAGAATCCTGCGCGAAGTGGAGCAAAACGCGGGTGACGGGTCAAAGTCA
GACACAGCTGTGCATGCAGACGTGGCGACGTCGAATCTCGATTCGACGCC
TCACTTAAATGAGCTTTCGCGGCAGTTGGCTTCGCTGTCACGCGAGGTAA
ACCGCTCGCGCAGTGACCAGTTGCTTATCATGCCTTCATACAAGGGCTCG
CTTGGCACTATCACCGACATTTTTAACTTGATCGGATGGGGAGTCGCGGC
AGTTTCGATAGGTGGGGTTATGTACTATGTAGCGTACCGGAAGAAGTTCA
GGTTGACGGATTTAGCCTGGGTGAGCCAGAGCACGTTTACGGGCACCGTG
GAAGCCATGCAGAAGGGCATAACGCGAGTGAGCGGCGCGTTAGGGGCGGT
TAAGAGGGAAATTACACTCCGGCTGCGCGAGGTAGAAGGGCGTGTCGACG
GGGTAAAGCTCGCGCTGGCGGACCAAATCGACCGTGATGTGGGTGCGGTG
AAAGAGGGGGTGGCTGAGGTAGGTGACGAAGTTGCTGGAGTAAAGAACGC
GTTGGGAGATGTGAACGAGAGAATCGATCAGCTAGACAACAAGATTGACT
TCGCTACGAGCGGCATTGTGGCCCTGGTCAAGGCTTTGTCAAGTGTAGCT
CCGGAACGCATTAAGCCAGGATCTCCGTTCTACGATTTGAGGAAGTTTGC
TGATTTGTCGGACACTAATTCTGCAAATTCCGGGATGCTGCGGCATCGCT
TATCAGCTGGCGGACTGCGGGGGCTGCTGACAGGTGAAGGAGGTGGGGAC
AACGAAGTTGTAGGGAAAAGAAGATCGATGGATTTAAAGAGCACAGTTTC
GTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:135680..136633-

>Gchil4030.t1 ID=Gchil4030.t1|Name=Gchil4030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=954bp|location=Sequence derived from alignment at tig00004373_pilon:135680..136633- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCGCTTGGGGTCCGTTCGCTCGCGCTGCTCTTCGGCGCCGGCTT
CTCTGGCTCCTACTTGTACAACCATCTCGACAAAGCGCGCTCCATCGCTG
CAAGAATCCTGCGCGAAGTGGAGCAAAACGCGGGTGACGGGTCAAAGTCA
GACACAGCTGTGCATGCAGACGTGGCGACGTCGAATCTCGATTCGACGCC
TCACTTAAATGAGCTTTCGCGGCAGTTGGCTTCGCTGTCACGCGAGGTAA
ACCGCTCGCGCAGTGACCAGTTGCTTATCATGCCTTCATACAAGGGCTCG
CTTGGCACTATCACCGACATTTTTAACTTGATCGGATGGGGAGTCGCGGC
AGTTTCGATAGGTGGGGTTATGTACTATGTAGCGTACCGGAAGAAGTTCA
GGTTGACGGATTTAGCCTGGGTGAGCCAGAGCACGTTTACGGGCACCGTG
GAAGCCATGCAGAAGGGCATAACGCGAGTGAGCGGCGCGTTAGGGGCGGT
TAAGAGGGAAATTACACTCCGGCTGCGCGAGGTAGAAGGGCGTGTCGACG
GGGTAAAGCTCGCGCTGGCGGACCAAATCGACCGTGATGTGGGTGCGGTG
AAAGAGGGGGTGGCTGAGGTAGGTGACGAAGTTGCTGGAGTAAAGAACGC
GTTGGGAGATGTGAACGAGAGAATCGATCAGCTAGACAACAAGATTGACT
TCGCTACGAGCGGCATTGTGGCCCTGGTCAAGGCTTTGTCAAGTGTAGCT
CCGGAACGCATTAAGCCAGGATCTCCGTTCTACGATTTGAGGAAGTTTGC
TGATTTGTCGGACACTAATTCTGCAAATTCCGGGATGCTGCGGCATCGCT
TATCAGCTGGCGGACTGCGGGGGCTGCTGACAGGTGAAGGAGGTGGGGAC
AACGAAGTTGTAGGGAAAAGAAGATCGATGGATTTAAAGAGCACAGTTTC
GTAA
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