Gchil4017.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4017.t1
Unique Name	Gchil4017.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	303

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:512539..513447 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4098.XP_009627023.1
PFAMs	Chalcone_2
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0005488,GO:0005504,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0008289,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0019752,GO:0031406,GO:0031967,GO:0031975,GO:0032787,GO:0033293,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071704
Evalue	8.61e-11
EggNOG OGs	28PRU@1\|root,2QQ8D@2759\|Eukaryota,37JUQ@33090\|Viridiplantae,3GFC9@35493\|Streptophyta,44DGV@71274\|asterids
Description	Chalcone isomerase like
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4017	Gchil4017	Gracilaria chilensis NLEC103_M9 male	gene	tig00000081_pilon 512539..513447 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4017.t1.start1	Gchil4017.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000081_pilon 512539..512541 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4017.t1.CDS1	Gchil4017.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000081_pilon 512539..513447 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4017.t1.exon1	Gchil4017.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000081_pilon 512539..513447 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4017.t1.stop1	Gchil4017.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000081_pilon 513445..513447 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4017.t1	Gchil4017.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000081_pilon 512539..513447 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000081_pilon:512539..513447+
coding sequence from alignment at tig00000081_pilon:512539..513447+

mRNA sequence

>Gchil4017.t1 ID=Gchil4017.t1|Name=Gchil4017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=303bp
MAALQLRALRLRALVAAALRPPSSSLPPSSLPPSSLPPSSLPLRSAPPPP
ARAPPLALALAAAAAAAAAATTAAHADPTPPHLVALDADADADTDTDAAA
ARVEPHTGVHFPATLSPTAHLLGLGARYMGGVVKVYAAGIYVHPTHARRA
LRAWRRFSAPELLRADPLWTVLCTHAAVPTVVRLVVARQVLGSHMQNGFE
RQLLHRVARAAKMGGACRPVECKAHAKRFCALFANVGTMKVGSDVRIALD
DDLVTLTVDGRLLGEIRSKQLASSLLDMFLGPKAVVEGLRHDVANGLEHL
LR*

spliced messenger RNA

>Gchil4017.t1 ID=Gchil4017.t1|Name=Gchil4017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000081_pilon:512539..513447+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGCTTCAGCTGCGCGCGCTTCGACTGCGAgcgctcgtcgccgc
ggcgctgcgtccgccatcttcatcgctgccgccgtcgtcgctgccgccgt
cgtcgctgccgccgtcgtcgctgccgctgcgatcggcgccgccgccgcca
gcccgTGCGCCGCCGCTGGCGCTGGCGCTGgccgccgccgccgctgccgc
cgccgccgccaccaccgccgcGCACGCCGACCCCACCCCTCCGCACCTCG
TCGCGCTcgacgccgacgccgacgccgacaccgacaccgacgccgccgcc
gCGCGCGTGGAGCCGCACACGGGCGTGCACTTCCCCGCCACGCTCTCGCC
AACGGCGCACCTGCTCGGGCTGGGCGCGCGTTACATGGGCGGCGTCGTCA
AGGTGTACGCCGCGGGAATCTACGTACATCCCACACACGCGCGCCGCGCC
CTGCGCGCGTGGCGTCGCTTCTCGGCGCCCGAGTTGCTGCGCGCCGATCC
GTTGTGGACCGTTTTGTGTACGCACGCCGCCGTGCCAACTGTGGTGCGTC
TCGTCGTCGCGCGACAGGTGTTGGGCTCGCACATGCAGAACGGCTTTGAA
CGACAGTTGTTGCATCGCGTGGCGCGCGCCGCCAAGATGGGGGGGGCTTG
TCGTCCGGTTGAGTGCAAGGCTCACGCAAAGCGATTCTGCGCCCTGTTTG
CAAACGTTGGCACCATGAAGGTTGGAAGTGATGTGCGCATAGCGCTTGAC
GACGATCTTGTCACCCTCACCGTCGATGGCAGATTGCTTGGCGAGATTCG
CAGCAAGCAGCTTGCTTCCTCCCTGCTGGATATGTTTTTGGGCCCCAAAG
CTGTCGTCGAAGGCTTGCGTCACGATGTCGCCAACGGTTTGGAACACCTT
TTACGTTGA

protein sequence of Gchil4017.t1

>Gchil4017.t1 ID=Gchil4017.t1|Name=Gchil4017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=303bp
MAALQLRALRLRALVAAALRPPSSSLPPSSLPPSSLPPSSLPLRSAPPPP
ARAPPLALALAAAAAAAAAATTAAHADPTPPHLVALDADADADTDTDAAA
ARVEPHTGVHFPATLSPTAHLLGLGARYMGGVVKVYAAGIYVHPTHARRA
LRAWRRFSAPELLRADPLWTVLCTHAAVPTVVRLVVARQVLGSHMQNGFE
RQLLHRVARAAKMGGACRPVECKAHAKRFCALFANVGTMKVGSDVRIALD
DDLVTLTVDGRLLGEIRSKQLASSLLDMFLGPKAVVEGLRHDVANGLEHL
LR*

mRNA from alignment at tig00000081_pilon:512539..513447+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4017.t1 ID=Gchil4017.t1|Name=Gchil4017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000081_pilon:512539..513447+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCGCTTCAGCTGCGCGCGCTTCGACTGCGAgcgctcgtcgccgc
ggcgctgcgtccgccatcttcatcgctgccgccgtcgtcgctgccgccgt
cgtcgctgccgccgtcgtcgctgccgctgcgatcggcgccgccgccgcca
gcccgTGCGCCGCCGCTGGCGCTGGCGCTGgccgccgccgccgctgccgc
cgccgccgccaccaccgccgcGCACGCCGACCCCACCCCTCCGCACCTCG
TCGCGCTcgacgccgacgccgacgccgacaccgacaccgacgccgccgcc
gCGCGCGTGGAGCCGCACACGGGCGTGCACTTCCCCGCCACGCTCTCGCC
AACGGCGCACCTGCTCGGGCTGGGCGCGCGTTACATGGGCGGCGTCGTCA
AGGTGTACGCCGCGGGAATCTACGTACATCCCACACACGCGCGCCGCGCC
CTGCGCGCGTGGCGTCGCTTCTCGGCGCCCGAGTTGCTGCGCGCCGATCC
GTTGTGGACCGTTTTGTGTACGCACGCCGCCGTGCCAACTGTGGTGCGTC
TCGTCGTCGCGCGACAGGTGTTGGGCTCGCACATGCAGAACGGCTTTGAA
CGACAGTTGTTGCATCGCGTGGCGCGCGCCGCCAAGATGGGGGGGGCTTG
TCGTCCGGTTGAGTGCAAGGCTCACGCAAAGCGATTCTGCGCCCTGTTTG
CAAACGTTGGCACCATGAAGGTTGGAAGTGATGTGCGCATAGCGCTTGAC
GACGATCTTGTCACCCTCACCGTCGATGGCAGATTGCTTGGCGAGATTCG
CAGCAAGCAGCTTGCTTCCTCCCTGCTGGATATGTTTTTGGGCCCCAAAG
CTGTCGTCGAAGGCTTGCGTCACGATGTCGCCAACGGTTTGGAACACCTT
TTACGTTGA

Coding sequence (CDS) from alignment at tig00000081_pilon:512539..513447+

>Gchil4017.t1 ID=Gchil4017.t1|Name=Gchil4017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000081_pilon:512539..513447+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCGCTTCAGCTGCGCGCGCTTCGACTGCGAgcgctcgtcgccgc
ggcgctgcgtccgccatcttcatcgctgccgccgtcgtcgctgccgccgt
cgtcgctgccgccgtcgtcgctgccgctgcgatcggcgccgccgccgcca
gcccgTGCGCCGCCGCTGGCGCTGGCGCTGgccgccgccgccgctgccgc
cgccgccgccaccaccgccgcGCACGCCGACCCCACCCCTCCGCACCTCG
TCGCGCTcgacgccgacgccgacgccgacaccgacaccgacgccgccgcc
gCGCGCGTGGAGCCGCACACGGGCGTGCACTTCCCCGCCACGCTCTCGCC
AACGGCGCACCTGCTCGGGCTGGGCGCGCGTTACATGGGCGGCGTCGTCA
AGGTGTACGCCGCGGGAATCTACGTACATCCCACACACGCGCGCCGCGCC
CTGCGCGCGTGGCGTCGCTTCTCGGCGCCCGAGTTGCTGCGCGCCGATCC
GTTGTGGACCGTTTTGTGTACGCACGCCGCCGTGCCAACTGTGGTGCGTC
TCGTCGTCGCGCGACAGGTGTTGGGCTCGCACATGCAGAACGGCTTTGAA
CGACAGTTGTTGCATCGCGTGGCGCGCGCCGCCAAGATGGGGGGGGCTTG
TCGTCCGGTTGAGTGCAAGGCTCACGCAAAGCGATTCTGCGCCCTGTTTG
CAAACGTTGGCACCATGAAGGTTGGAAGTGATGTGCGCATAGCGCTTGAC
GACGATCTTGTCACCCTCACCGTCGATGGCAGATTGCTTGGCGAGATTCG
CAGCAAGCAGCTTGCTTCCTCCCTGCTGGATATGTTTTTGGGCCCCAAAG
CTGTCGTCGAAGGCTTGCGTCACGATGTCGCCAACGGTTTGGAACACCTT
TTACGTTGA