Gchil3732.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3732.t1
Unique NameGchil3732.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length648
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:1077901..1079844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3732Gchil3732Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 1077901..1079844 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3732.t1.stop1Gchil3732.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 1077901..1077903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3732.t1.CDS1Gchil3732.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 1077901..1079844 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3732.t1.exon1Gchil3732.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 1077901..1079844 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3732.t1.start1Gchil3732.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 1079842..1079844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3732.t1Gchil3732.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 1077901..1079844 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3732.t1 ID=Gchil3732.t1|Name=Gchil3732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=648bp
MDVSELFASAPLHAWQQQPPPSIAALAAAAGDAAASAAAASAAAAAADPT
VSPSSPSSAPPFHTPATVPPSFSFPRTVDASLLDDSPFVDDAFASEVAPG
LSHFSSSPIFPPIDEDPVWAVSNHPHLPAPPMLTDDPAVMSHQLSHSNFN
SPSLRPAPQLSPPPPLPFFDDRSHSPPVNPALSLQQPSVAHFADLQFPPH
IHSHIHSYQPPQPSNQQRSVSPSSNNNRVTHNVTRTICHTSSPPRPTPVT
SRVNKTQRKKRQSSSRASRTTAKSMPQLVVHPSRTQQPLQPQPQPPHPPH
PTHIPSPLSKSPPPHLSNLPQIPSSTTPTTAATPSTTNSVQRSPPRTPYP
IVSSKPLSIVPHQQQQPNSTIQPLPNNSSHPNLSAQLSSHTVLTNSPSNH
SKSQYNTGSTSTRHAASHSAKPARTTKPRDKLSRVTKLIKCRTKEQLVDQ
MLRLLRASEISEDLVRGTLAPIDISHYVSQCRLQYDLVYKLLSERRNPPS
SAYDSLAYNRCKPALLSFKNLVSDFGRMFIEAAVWMDVLRFCLLAAQMNA
QLPEWREHQYNKTKLQLHTKLEQFATRAVNYLAKMKQSPLVDAHDATELV
EMYQRLLPSVATKLNNVLAILRPVNVSVLQGQKQSSERPTNTDSSVV*
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spliced messenger RNA

>Gchil3732.t1 ID=Gchil3732.t1|Name=Gchil3732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at tig00025222_pilon:1077901..1079844- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGTTTCCGAACTGTTCGCCTCCGCCCCGCTGCACGCTTGGCAGCA
ACAACCGCCTCCATCCATCGCCGCCCTGGCCGCCGCCGCCGGCGACGCCG
CAGCCTCCGCCGCCGCCGCCTCCGCCGCCGCCGCCGCCGCCGACCCCACC
GTCTCCCCGTCCTCCCCCTCCTCCGCACCCCCCTTCCACACCCCCGCCAC
AGTGCCGCCGTCCTTCTCTTTTCCCCGCACCGTCGATGCCTCGCTGCTCG
ACGATTCGCCCTTCGTCGACGATGCATTCGCCTCCGAGGTCGCCCCTGGT
CTGTCTCACTTCTCCTCCTCCCCCATCTTCCCGCCTATCGACGAAGACCC
CGTGTGGGCCGTTTCCAACCACCCCCACCTGCCTGCCCCGCCCATGCTGA
CCGACGACCCCGCTGTCATGTCGCATCAGCTCTCACACAGTAATTTCAAC
TCACCGTCGTTGCGCCCTGCCCCTCAGCTCTCCCCGCCTCCGCCGCTTCC
CTTCTTCGATGACCGTTCGCACTCGCCCCCCGTCAACCCCGCTCTTTCCT
TGCAACAGCCTTCTGTCGCTCACTTTGCCGACCTGCAATTCCCCCCGCAT
ATTCATTCCCACATTCACTCTTATCAGCCTCCGCAACCTTCAAATCAACA
GCGTTCCGTATCTCCATCGTCTAATAATAATCGCGTCACGCATAATGTTA
CGCGCACCATTTGTCACACATCCTCACCGCCACGCCCAACCCCCGTCACC
TCCCGTGTCAACAAGACCCAACGGAAGAAGCGACAGTCATCCTCCCGCGC
CTCACGCACCACCGCAAAGTCTATGCCCCAACTGGTCGTTCATCCATCTC
GCACCCAACAGCCTTTGCAACCACAGCCTCAACCGCCTCACCCACCTCAT
CCAACCCACATCCCTTCACCTCTTTCCAAATCGCCCCCGCCCCACCTCTC
AAACCTGCCCCAAATCCCTTCTTCCACCACCCCCACCACCGCCGCAACAC
CCTCCACCACCAATTCCGTACAGCGCTCCCCTCCCCGAACGCCCTATCCC
ATCGTATCCTCAAAACCGCTCTCCATTGTGCCGCATCAGCAACAACAGCC
CAACTCCACAATCCAGCCTCTTCCTAACAATTCTTCTCATCCCAATCTTT
CAGCTCAACTCTCCTCACATACTGTGCTCACTAATTCTCCCTCAAATCAT
TCAAAGTCACAGTATAACACGGGCTCCACCTCAACAAGGCATGCTGCTTC
TCACTCGGCAAAGCCTGCCAGGACCACCAAGCCGCGCGACAAGCTATCTC
GCGTCACAAAGCTTATCAAATGCCGCACAAAGGAGCAATTGGTCGACCAG
ATGCTCAGACTGCTCCGTGCTTCCGAGATCTCGGAGGATTTAGTGCGTGG
AACGCTGGCCCCCATAGATATCTCCCATTACGTATCTCAATGCCGTCTGC
AGTACGACTTGGTGTACAAACTTCTTTCGGAACGTCGCAACCCCCCGTCC
AGCGCATATGACTCGCTTGCGTATAACAGATGCAAGCCAGCATTGCTGTC
CTTTAAGAACCTTGTTTCGGACTTTGGGCGCATGTTCATTGAAGCCGCCG
TTTGGATGGATGTTTTGCGCTTTTGTCTCCTTGCGGCACAAATGAACGCC
CAGCTTCCCGAGTGGCGAGAACATCAGTACAACAAGACCAAGCTTCAGCT
GCACACCAAGCTTGAACAATTTGCCACGCGTGCCGTCAATTACCTGGCTA
AGATGAAACAGTCGCCTCTTGTAGATGCTCATGATGCGACAGAATTGGTG
GAAATGTATCAGCGGTTGCTCCCTTCTGTTGCCACCAAGCTGAACAACGT
TCTTGCTATTCTGCGTCCGGTCAATGTTTCGGTGCTTCAGGGGCAAAAGC
AAAGCTCTGAACGACCAACAAACACTGATAGCAGCGTAGTGTGA
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protein sequence of Gchil3732.t1

>Gchil3732.t1 ID=Gchil3732.t1|Name=Gchil3732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=648bp
MDVSELFASAPLHAWQQQPPPSIAALAAAAGDAAASAAAASAAAAAADPT
VSPSSPSSAPPFHTPATVPPSFSFPRTVDASLLDDSPFVDDAFASEVAPG
LSHFSSSPIFPPIDEDPVWAVSNHPHLPAPPMLTDDPAVMSHQLSHSNFN
SPSLRPAPQLSPPPPLPFFDDRSHSPPVNPALSLQQPSVAHFADLQFPPH
IHSHIHSYQPPQPSNQQRSVSPSSNNNRVTHNVTRTICHTSSPPRPTPVT
SRVNKTQRKKRQSSSRASRTTAKSMPQLVVHPSRTQQPLQPQPQPPHPPH
PTHIPSPLSKSPPPHLSNLPQIPSSTTPTTAATPSTTNSVQRSPPRTPYP
IVSSKPLSIVPHQQQQPNSTIQPLPNNSSHPNLSAQLSSHTVLTNSPSNH
SKSQYNTGSTSTRHAASHSAKPARTTKPRDKLSRVTKLIKCRTKEQLVDQ
MLRLLRASEISEDLVRGTLAPIDISHYVSQCRLQYDLVYKLLSERRNPPS
SAYDSLAYNRCKPALLSFKNLVSDFGRMFIEAAVWMDVLRFCLLAAQMNA
QLPEWREHQYNKTKLQLHTKLEQFATRAVNYLAKMKQSPLVDAHDATELV
EMYQRLLPSVATKLNNVLAILRPVNVSVLQGQKQSSERPTNTDSSVV*
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mRNA from alignment at tig00025222_pilon:1077901..1079844-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3732.t1 ID=Gchil3732.t1|Name=Gchil3732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at tig00025222_pilon:1077901..1079844- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGTTTCCGAACTGTTCGCCTCCGCCCCGCTGCACGCTTGGCAGCA
ACAACCGCCTCCATCCATCGCCGCCCTGGCCGCCGCCGCCGGCGACGCCG
CAGCCTCCGCCGCCGCCGCCTCCGCCGCCGCCGCCGCCGCCGACCCCACC
GTCTCCCCGTCCTCCCCCTCCTCCGCACCCCCCTTCCACACCCCCGCCAC
AGTGCCGCCGTCCTTCTCTTTTCCCCGCACCGTCGATGCCTCGCTGCTCG
ACGATTCGCCCTTCGTCGACGATGCATTCGCCTCCGAGGTCGCCCCTGGT
CTGTCTCACTTCTCCTCCTCCCCCATCTTCCCGCCTATCGACGAAGACCC
CGTGTGGGCCGTTTCCAACCACCCCCACCTGCCTGCCCCGCCCATGCTGA
CCGACGACCCCGCTGTCATGTCGCATCAGCTCTCACACAGTAATTTCAAC
TCACCGTCGTTGCGCCCTGCCCCTCAGCTCTCCCCGCCTCCGCCGCTTCC
CTTCTTCGATGACCGTTCGCACTCGCCCCCCGTCAACCCCGCTCTTTCCT
TGCAACAGCCTTCTGTCGCTCACTTTGCCGACCTGCAATTCCCCCCGCAT
ATTCATTCCCACATTCACTCTTATCAGCCTCCGCAACCTTCAAATCAACA
GCGTTCCGTATCTCCATCGTCTAATAATAATCGCGTCACGCATAATGTTA
CGCGCACCATTTGTCACACATCCTCACCGCCACGCCCAACCCCCGTCACC
TCCCGTGTCAACAAGACCCAACGGAAGAAGCGACAGTCATCCTCCCGCGC
CTCACGCACCACCGCAAAGTCTATGCCCCAACTGGTCGTTCATCCATCTC
GCACCCAACAGCCTTTGCAACCACAGCCTCAACCGCCTCACCCACCTCAT
CCAACCCACATCCCTTCACCTCTTTCCAAATCGCCCCCGCCCCACCTCTC
AAACCTGCCCCAAATCCCTTCTTCCACCACCCCCACCACCGCCGCAACAC
CCTCCACCACCAATTCCGTACAGCGCTCCCCTCCCCGAACGCCCTATCCC
ATCGTATCCTCAAAACCGCTCTCCATTGTGCCGCATCAGCAACAACAGCC
CAACTCCACAATCCAGCCTCTTCCTAACAATTCTTCTCATCCCAATCTTT
CAGCTCAACTCTCCTCACATACTGTGCTCACTAATTCTCCCTCAAATCAT
TCAAAGTCACAGTATAACACGGGCTCCACCTCAACAAGGCATGCTGCTTC
TCACTCGGCAAAGCCTGCCAGGACCACCAAGCCGCGCGACAAGCTATCTC
GCGTCACAAAGCTTATCAAATGCCGCACAAAGGAGCAATTGGTCGACCAG
ATGCTCAGACTGCTCCGTGCTTCCGAGATCTCGGAGGATTTAGTGCGTGG
AACGCTGGCCCCCATAGATATCTCCCATTACGTATCTCAATGCCGTCTGC
AGTACGACTTGGTGTACAAACTTCTTTCGGAACGTCGCAACCCCCCGTCC
AGCGCATATGACTCGCTTGCGTATAACAGATGCAAGCCAGCATTGCTGTC
CTTTAAGAACCTTGTTTCGGACTTTGGGCGCATGTTCATTGAAGCCGCCG
TTTGGATGGATGTTTTGCGCTTTTGTCTCCTTGCGGCACAAATGAACGCC
CAGCTTCCCGAGTGGCGAGAACATCAGTACAACAAGACCAAGCTTCAGCT
GCACACCAAGCTTGAACAATTTGCCACGCGTGCCGTCAATTACCTGGCTA
AGATGAAACAGTCGCCTCTTGTAGATGCTCATGATGCGACAGAATTGGTG
GAAATGTATCAGCGGTTGCTCCCTTCTGTTGCCACCAAGCTGAACAACGT
TCTTGCTATTCTGCGTCCGGTCAATGTTTCGGTGCTTCAGGGGCAAAAGC
AAAGCTCTGAACGACCAACAAACACTGATAGCAGCGTAGTGTGA
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Coding sequence (CDS) from alignment at tig00025222_pilon:1077901..1079844-

>Gchil3732.t1 ID=Gchil3732.t1|Name=Gchil3732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1944bp|location=Sequence derived from alignment at tig00025222_pilon:1077901..1079844- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGTTTCCGAACTGTTCGCCTCCGCCCCGCTGCACGCTTGGCAGCA
ACAACCGCCTCCATCCATCGCCGCCCTGGCCGCCGCCGCCGGCGACGCCG
CAGCCTCCGCCGCCGCCGCCTCCGCCGCCGCCGCCGCCGCCGACCCCACC
GTCTCCCCGTCCTCCCCCTCCTCCGCACCCCCCTTCCACACCCCCGCCAC
AGTGCCGCCGTCCTTCTCTTTTCCCCGCACCGTCGATGCCTCGCTGCTCG
ACGATTCGCCCTTCGTCGACGATGCATTCGCCTCCGAGGTCGCCCCTGGT
CTGTCTCACTTCTCCTCCTCCCCCATCTTCCCGCCTATCGACGAAGACCC
CGTGTGGGCCGTTTCCAACCACCCCCACCTGCCTGCCCCGCCCATGCTGA
CCGACGACCCCGCTGTCATGTCGCATCAGCTCTCACACAGTAATTTCAAC
TCACCGTCGTTGCGCCCTGCCCCTCAGCTCTCCCCGCCTCCGCCGCTTCC
CTTCTTCGATGACCGTTCGCACTCGCCCCCCGTCAACCCCGCTCTTTCCT
TGCAACAGCCTTCTGTCGCTCACTTTGCCGACCTGCAATTCCCCCCGCAT
ATTCATTCCCACATTCACTCTTATCAGCCTCCGCAACCTTCAAATCAACA
GCGTTCCGTATCTCCATCGTCTAATAATAATCGCGTCACGCATAATGTTA
CGCGCACCATTTGTCACACATCCTCACCGCCACGCCCAACCCCCGTCACC
TCCCGTGTCAACAAGACCCAACGGAAGAAGCGACAGTCATCCTCCCGCGC
CTCACGCACCACCGCAAAGTCTATGCCCCAACTGGTCGTTCATCCATCTC
GCACCCAACAGCCTTTGCAACCACAGCCTCAACCGCCTCACCCACCTCAT
CCAACCCACATCCCTTCACCTCTTTCCAAATCGCCCCCGCCCCACCTCTC
AAACCTGCCCCAAATCCCTTCTTCCACCACCCCCACCACCGCCGCAACAC
CCTCCACCACCAATTCCGTACAGCGCTCCCCTCCCCGAACGCCCTATCCC
ATCGTATCCTCAAAACCGCTCTCCATTGTGCCGCATCAGCAACAACAGCC
CAACTCCACAATCCAGCCTCTTCCTAACAATTCTTCTCATCCCAATCTTT
CAGCTCAACTCTCCTCACATACTGTGCTCACTAATTCTCCCTCAAATCAT
TCAAAGTCACAGTATAACACGGGCTCCACCTCAACAAGGCATGCTGCTTC
TCACTCGGCAAAGCCTGCCAGGACCACCAAGCCGCGCGACAAGCTATCTC
GCGTCACAAAGCTTATCAAATGCCGCACAAAGGAGCAATTGGTCGACCAG
ATGCTCAGACTGCTCCGTGCTTCCGAGATCTCGGAGGATTTAGTGCGTGG
AACGCTGGCCCCCATAGATATCTCCCATTACGTATCTCAATGCCGTCTGC
AGTACGACTTGGTGTACAAACTTCTTTCGGAACGTCGCAACCCCCCGTCC
AGCGCATATGACTCGCTTGCGTATAACAGATGCAAGCCAGCATTGCTGTC
CTTTAAGAACCTTGTTTCGGACTTTGGGCGCATGTTCATTGAAGCCGCCG
TTTGGATGGATGTTTTGCGCTTTTGTCTCCTTGCGGCACAAATGAACGCC
CAGCTTCCCGAGTGGCGAGAACATCAGTACAACAAGACCAAGCTTCAGCT
GCACACCAAGCTTGAACAATTTGCCACGCGTGCCGTCAATTACCTGGCTA
AGATGAAACAGTCGCCTCTTGTAGATGCTCATGATGCGACAGAATTGGTG
GAAATGTATCAGCGGTTGCTCCCTTCTGTTGCCACCAAGCTGAACAACGT
TCTTGCTATTCTGCGTCCGGTCAATGTTTCGGTGCTTCAGGGGCAAAAGC
AAAGCTCTGAACGACCAACAAACACTGATAGCAGCGTAGTGTGA
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