Gchil3645.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3645.t1
Unique NameGchil3645.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length308
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:388508..389431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3645Gchil3645Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 388508..389431 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3645.t1.stop1Gchil3645.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 388508..388510 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3645.t1.CDS1Gchil3645.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 388508..389431 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3645.t1.exon1Gchil3645.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 388508..389431 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3645.t1.start1Gchil3645.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 389429..389431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3645.t1Gchil3645.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 388508..389431 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3645.t1 ID=Gchil3645.t1|Name=Gchil3645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=308bp
MRSSAAAELEKMQRVFLLLAVGIALMWAQAHAAFSAAHLYWPFLTTAVAE
ASSEGCARALGKDVQEIEQQGYERGMAALAPQFWFYDGVRCSKWGGVADA
RVLVASGGGEPDWADGVLRRAARDAQDTFGGGSVAWAEARAGETAATVTC
GARVVSRILFVRGRRDGTVRVGANEVTARDGALVVVVEESDGRVCAFNGW
TEAPNKRLSVDVVAMDAGGGSGDGGVDGGRVAGGVVGVVALGALLYGATW
WAARAARRKEALVEKQGAGKQYKKDDEDEAEADEDGVSDDSALEEGVLGS
EQRGRAE*
back to top

spliced messenger RNA

>Gchil3645.t1 ID=Gchil3645.t1|Name=Gchil3645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00025222_pilon:388508..389431- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGTCGAGCGCGGCGGCAGAGCTGGAGAAGATGCAAAGGGTGTTTCT
ACTACTGGCGGTGGGAATTGCGCTGATGTGGGCGCAGGCGCACGCAGCGT
TCTCCGCAGCGCACCTGTACTGGCCGTTTCTGACCACGGCGGTGGCGGAG
GCGTCATCGGAAGGATGCGCGCGTGCACTGGGAAAGGACGTGCAGGAGAT
TGAGCAACAGGGATATGAGCGCGGCATGGCGGCACTGGCGCCGCAGTTCT
GGTTCTACGACGGCGTGCGATGCTCGAAGTGGGGCGGCGTGGCGGACGCG
CGCGTGCTAGTGGCCAGCGGCGGCGGCGAGCCGGACTGGGCGGACGGCGT
TTTACGACGCGCCGCACGCGATGCACAGGATACGTTTGGAGGGGGAAGTG
TGGCGTGGGCGGAGGCGCGCGCCGGTGAGACGGCGGCGACGGTGACGTGC
GGAGCGCGCGTGGTGTCACGCATATTGTTTGTGCGCGGGCGGCGCGACGG
TACGGTGCGCGTGGGCGCTAATGAAGTGACGGCGCGCGATGGCGCGTTGG
TGGTGGTGGTAGAGGAGAGCGATGGTCGGGTGTGCGCGTTTAACGGGTGG
ACTGAGGCGCCGAACAAACGACTGAGCGTGGACGTGGTGGCTATGGACGC
GGGCGGTGGCAGCGGCGATGGTGGCGTTGATGGCGGGCGTGTGGCGGGCG
GCGTGGTGGGCGTGGTGGCGCTGGGCGCGCTGCTGTACGGGGCGACTTGG
TGGGCGGCGCGGGCGGCGCGACGCAAGGAGGCGCTGGTGGAGAAGCAGGG
CGCGGGCAAGCAGTACAAGAAGGACGACGAGGACGAGGCCGAGGCCGATG
AAGACGGCGTATCGGACGACAGCGCGCTGGAGGAGGGCGTTTTAGGCAGT
GAGCAGCGCGGAAGAGCAGAATAA
back to top

protein sequence of Gchil3645.t1

>Gchil3645.t1 ID=Gchil3645.t1|Name=Gchil3645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=308bp
MRSSAAAELEKMQRVFLLLAVGIALMWAQAHAAFSAAHLYWPFLTTAVAE
ASSEGCARALGKDVQEIEQQGYERGMAALAPQFWFYDGVRCSKWGGVADA
RVLVASGGGEPDWADGVLRRAARDAQDTFGGGSVAWAEARAGETAATVTC
GARVVSRILFVRGRRDGTVRVGANEVTARDGALVVVVEESDGRVCAFNGW
TEAPNKRLSVDVVAMDAGGGSGDGGVDGGRVAGGVVGVVALGALLYGATW
WAARAARRKEALVEKQGAGKQYKKDDEDEAEADEDGVSDDSALEEGVLGS
EQRGRAE*
back to top

mRNA from alignment at tig00025222_pilon:388508..389431-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3645.t1 ID=Gchil3645.t1|Name=Gchil3645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00025222_pilon:388508..389431- (Gracilaria chilensis NLEC103_M9 male)
ATGCGGTCGAGCGCGGCGGCAGAGCTGGAGAAGATGCAAAGGGTGTTTCT
ACTACTGGCGGTGGGAATTGCGCTGATGTGGGCGCAGGCGCACGCAGCGT
TCTCCGCAGCGCACCTGTACTGGCCGTTTCTGACCACGGCGGTGGCGGAG
GCGTCATCGGAAGGATGCGCGCGTGCACTGGGAAAGGACGTGCAGGAGAT
TGAGCAACAGGGATATGAGCGCGGCATGGCGGCACTGGCGCCGCAGTTCT
GGTTCTACGACGGCGTGCGATGCTCGAAGTGGGGCGGCGTGGCGGACGCG
CGCGTGCTAGTGGCCAGCGGCGGCGGCGAGCCGGACTGGGCGGACGGCGT
TTTACGACGCGCCGCACGCGATGCACAGGATACGTTTGGAGGGGGAAGTG
TGGCGTGGGCGGAGGCGCGCGCCGGTGAGACGGCGGCGACGGTGACGTGC
GGAGCGCGCGTGGTGTCACGCATATTGTTTGTGCGCGGGCGGCGCGACGG
TACGGTGCGCGTGGGCGCTAATGAAGTGACGGCGCGCGATGGCGCGTTGG
TGGTGGTGGTAGAGGAGAGCGATGGTCGGGTGTGCGCGTTTAACGGGTGG
ACTGAGGCGCCGAACAAACGACTGAGCGTGGACGTGGTGGCTATGGACGC
GGGCGGTGGCAGCGGCGATGGTGGCGTTGATGGCGGGCGTGTGGCGGGCG
GCGTGGTGGGCGTGGTGGCGCTGGGCGCGCTGCTGTACGGGGCGACTTGG
TGGGCGGCGCGGGCGGCGCGACGCAAGGAGGCGCTGGTGGAGAAGCAGGG
CGCGGGCAAGCAGTACAAGAAGGACGACGAGGACGAGGCCGAGGCCGATG
AAGACGGCGTATCGGACGACAGCGCGCTGGAGGAGGGCGTTTTAGGCAGT
GAGCAGCGCGGAAGAGCAGAATAA
back to top

Coding sequence (CDS) from alignment at tig00025222_pilon:388508..389431-

>Gchil3645.t1 ID=Gchil3645.t1|Name=Gchil3645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=924bp|location=Sequence derived from alignment at tig00025222_pilon:388508..389431- (Gracilaria chilensis NLEC103_M9 male)
ATGCGGTCGAGCGCGGCGGCAGAGCTGGAGAAGATGCAAAGGGTGTTTCT
ACTACTGGCGGTGGGAATTGCGCTGATGTGGGCGCAGGCGCACGCAGCGT
TCTCCGCAGCGCACCTGTACTGGCCGTTTCTGACCACGGCGGTGGCGGAG
GCGTCATCGGAAGGATGCGCGCGTGCACTGGGAAAGGACGTGCAGGAGAT
TGAGCAACAGGGATATGAGCGCGGCATGGCGGCACTGGCGCCGCAGTTCT
GGTTCTACGACGGCGTGCGATGCTCGAAGTGGGGCGGCGTGGCGGACGCG
CGCGTGCTAGTGGCCAGCGGCGGCGGCGAGCCGGACTGGGCGGACGGCGT
TTTACGACGCGCCGCACGCGATGCACAGGATACGTTTGGAGGGGGAAGTG
TGGCGTGGGCGGAGGCGCGCGCCGGTGAGACGGCGGCGACGGTGACGTGC
GGAGCGCGCGTGGTGTCACGCATATTGTTTGTGCGCGGGCGGCGCGACGG
TACGGTGCGCGTGGGCGCTAATGAAGTGACGGCGCGCGATGGCGCGTTGG
TGGTGGTGGTAGAGGAGAGCGATGGTCGGGTGTGCGCGTTTAACGGGTGG
ACTGAGGCGCCGAACAAACGACTGAGCGTGGACGTGGTGGCTATGGACGC
GGGCGGTGGCAGCGGCGATGGTGGCGTTGATGGCGGGCGTGTGGCGGGCG
GCGTGGTGGGCGTGGTGGCGCTGGGCGCGCTGCTGTACGGGGCGACTTGG
TGGGCGGCGCGGGCGGCGCGACGCAAGGAGGCGCTGGTGGAGAAGCAGGG
CGCGGGCAAGCAGTACAAGAAGGACGACGAGGACGAGGCCGAGGCCGATG
AAGACGGCGTATCGGACGACAGCGCGCTGGAGGAGGGCGTTTTAGGCAGT
GAGCAGCGCGGAAGAGCAGAATAA
back to top