Gchil3634.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3634.t1
Unique Name	Gchil3634.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	218

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:362326..362979 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706252.1
Preferred name	RPL10A
PFAMs	Ribosomal_L1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02865,ko:K04532
KEGG Pathway	ko03010,ko05010,map03010,map05010
KEGG Module	M00177
GOs	GO:0000184,GO:0000470,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009636,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042221,GO:0042254,GO:0042273,GO:0042493,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045471,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097305,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1990904
Evalue	2.67e-111
EggNOG OGs	COG0081@1\|root,KOG1570@2759\|Eukaryota
Description	maturation of LSU-rRNA
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3634	Gchil3634	Gracilaria chilensis NLEC103_M9 male	gene	tig00025222_pilon 362326..362979 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3634.t1.start1	Gchil3634.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025222_pilon 362326..362328 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3634.t1.CDS1	Gchil3634.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025222_pilon 362326..362979 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3634.t1.exon1	Gchil3634.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025222_pilon 362326..362979 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3634.t1.stop1	Gchil3634.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025222_pilon 362977..362979 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3634.t1	Gchil3634.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025222_pilon 362326..362979 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025222_pilon:362326..362979+
coding sequence from alignment at tig00025222_pilon:362326..362979+

mRNA sequence

>Gchil3634.t1 ID=Gchil3634.t1|Name=Gchil3634.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=218bp
MSSKLPAATVRDAVAEILAEAQEKKRNFQETIELQIGLKNYDTKKDKRFA
GSIKLPNVPRPNMKVAILGNAVHVSEAEKIGIPAYSTDDLKKFNKQKKPI
KKFAKKYDAFLASDSIIKTIPRILGPGLNKAGKFPSLLSASDSMEEKVSE
IRSTIKFQLKKVLCMAAAVGHVNMPEDEVTANIILAVNFLVSLLKKNWQN
VKSLHVKSTMGKPKRIF*

spliced messenger RNA

>Gchil3634.t1 ID=Gchil3634.t1|Name=Gchil3634.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00025222_pilon:362326..362979+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCTAAACTGCCTGCTGCCACTGTGCGCGATGCCGTCGCTGAGAT
TCTTGCCGAAGCTCAAGAGAAAAAAAGAAACTTTCAAGAAACCATCGAAC
TGCAAATTGGACTCAAGAACTACGACACGAAGAAGGACAAGCGTTTCGCG
GGCAGCATCAAGTTACCAAACGTACCGCGCCCCAACATGAAGGTCGCCAT
CTTGGGAAATGCTGTCCACGTCTCTGAGGCAGAAAAGATCGGCATTCCGG
CCTATTCCACTGACGATCTCAAGAAGTTTAACAAGCAAAAGAAACCTATC
AAGAAGTTTGCAAAGAAGTACGATGCCTTTCTCGCAAGCGATTCAATCAT
CAAGACCATCCCAAGGATATTGGGTCCAGGTCTCAACAAGGCTGGAAAGT
TTCCAAGTTTGCTCAGTGCCAGTGACTCGATGGAAGAAAAGGTGAGTGAG
ATCCGGTCCACCATCAAGTTCCAACTCAAGAAAGTGCTGTGTATGGCTGC
CGCCGTGGGGCATGTAAATATGCCTGAAGATGAAGTGACGGCCAACATCA
TCTTGGCCGTCAACTTCCTGGTATCCTTATTGAAGAAGAACTGGCAGAAC
GTGAAGAGTTTGCACGTAAAAAGCACTATGGGCAAGCCGAAGCGCATTTT
CTAG

protein sequence of Gchil3634.t1

>Gchil3634.t1 ID=Gchil3634.t1|Name=Gchil3634.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=218bp
MSSKLPAATVRDAVAEILAEAQEKKRNFQETIELQIGLKNYDTKKDKRFA
GSIKLPNVPRPNMKVAILGNAVHVSEAEKIGIPAYSTDDLKKFNKQKKPI
KKFAKKYDAFLASDSIIKTIPRILGPGLNKAGKFPSLLSASDSMEEKVSE
IRSTIKFQLKKVLCMAAAVGHVNMPEDEVTANIILAVNFLVSLLKKNWQN
VKSLHVKSTMGKPKRIF*

mRNA from alignment at tig00025222_pilon:362326..362979+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3634.t1 ID=Gchil3634.t1|Name=Gchil3634.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00025222_pilon:362326..362979+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCTAAACTGCCTGCTGCCACTGTGCGCGATGCCGTCGCTGAGAT
TCTTGCCGAAGCTCAAGAGAAAAAAAGAAACTTTCAAGAAACCATCGAAC
TGCAAATTGGACTCAAGAACTACGACACGAAGAAGGACAAGCGTTTCGCG
GGCAGCATCAAGTTACCAAACGTACCGCGCCCCAACATGAAGGTCGCCAT
CTTGGGAAATGCTGTCCACGTCTCTGAGGCAGAAAAGATCGGCATTCCGG
CCTATTCCACTGACGATCTCAAGAAGTTTAACAAGCAAAAGAAACCTATC
AAGAAGTTTGCAAAGAAGTACGATGCCTTTCTCGCAAGCGATTCAATCAT
CAAGACCATCCCAAGGATATTGGGTCCAGGTCTCAACAAGGCTGGAAAGT
TTCCAAGTTTGCTCAGTGCCAGTGACTCGATGGAAGAAAAGGTGAGTGAG
ATCCGGTCCACCATCAAGTTCCAACTCAAGAAAGTGCTGTGTATGGCTGC
CGCCGTGGGGCATGTAAATATGCCTGAAGATGAAGTGACGGCCAACATCA
TCTTGGCCGTCAACTTCCTGGTATCCTTATTGAAGAAGAACTGGCAGAAC
GTGAAGAGTTTGCACGTAAAAAGCACTATGGGCAAGCCGAAGCGCATTTT
CTAG

Coding sequence (CDS) from alignment at tig00025222_pilon:362326..362979+

>Gchil3634.t1 ID=Gchil3634.t1|Name=Gchil3634.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=654bp|location=Sequence derived from alignment at tig00025222_pilon:362326..362979+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCTAAACTGCCTGCTGCCACTGTGCGCGATGCCGTCGCTGAGAT
TCTTGCCGAAGCTCAAGAGAAAAAAAGAAACTTTCAAGAAACCATCGAAC
TGCAAATTGGACTCAAGAACTACGACACGAAGAAGGACAAGCGTTTCGCG
GGCAGCATCAAGTTACCAAACGTACCGCGCCCCAACATGAAGGTCGCCAT
CTTGGGAAATGCTGTCCACGTCTCTGAGGCAGAAAAGATCGGCATTCCGG
CCTATTCCACTGACGATCTCAAGAAGTTTAACAAGCAAAAGAAACCTATC
AAGAAGTTTGCAAAGAAGTACGATGCCTTTCTCGCAAGCGATTCAATCAT
CAAGACCATCCCAAGGATATTGGGTCCAGGTCTCAACAAGGCTGGAAAGT
TTCCAAGTTTGCTCAGTGCCAGTGACTCGATGGAAGAAAAGGTGAGTGAG
ATCCGGTCCACCATCAAGTTCCAACTCAAGAAAGTGCTGTGTATGGCTGC
CGCCGTGGGGCATGTAAATATGCCTGAAGATGAAGTGACGGCCAACATCA
TCTTGGCCGTCAACTTCCTGGTATCCTTATTGAAGAAGAACTGGCAGAAC
GTGAAGAGTTTGCACGTAAAAAGCACTATGGGCAAGCCGAAGCGCATTTT
CTAG