Gchil356.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil356.t1
Unique NameGchil356.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:531621..532379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002946011.1
PFAMsPeptidase_C1
Max annot lvl2759|Eukaryota
Evalue4.1e-18
EggNOG OGsCOG4870@1|root,2S8PN@2759|Eukaryota
DescriptionBelongs to the peptidase C1 family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil356Gchil356Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 531621..532379 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil356.t1.start1Gchil356.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 531621..531623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil356.t1.CDS1Gchil356.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 531621..532379 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil356.t1.exon1Gchil356.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 531621..532379 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil356.t1.stop1Gchil356.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 532377..532379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil356.t1Gchil356.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 531621..532379 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil356.t1 ID=Gchil356.t1|Name=Gchil356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=253bp
MNVLQKLLLYVIVLSTAAICACGNSSPRQLSMVKRVENFHHEIRQAVSVD
EERNSSVLQDFTLFFGPIGQGVINVRSGLSASFRFDYRIQGVTSRYLAES
DQVFRSSLDQHEKILYDESKRRYDGGLDIPFLSELGMNLSHSHSESALQE
AMSAVEDYSKKAIAARRIMESFHGSRLRINGSISAVGVSEMPSRASVYVK
VSRVTLIDETVLHVVSSNTNDILAGDGFYNELPIVDIDSDIIQEVEGNPL
LL*
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spliced messenger RNA

>Gchil356.t1 ID=Gchil356.t1|Name=Gchil356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000212_pilon:531621..532379+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTCCTACAAAAGCTCCTGCTGTACGTCATTGTTCTTTCTACAGC
CGCAATCTGCGCATGCGGCAATTCAAGTCCCAGACAGCTTTCCATGGTAA
AGAGAGTTGAAAATTTTCATCATGAAATTCGACAAGCAGTAAGCGTCGAT
GAAGAACGAAACAGTTCTGTCCTGCAAGATTTCACACTATTTTTTGGACC
GATTGGACAGGGAGTCATTAACGTTAGATCGGGGTTATCAGCGTCTTTCA
GATTCGATTATCGAATTCAAGGCGTAACATCTCGCTATCTCGCTGAAAGT
GATCAGGTTTTCCGGTCAAGTCTTGACCAGCACGAAAAAATTCTTTACGA
TGAAAGCAAACGGAGATATGATGGAGGTTTGGACATACCCTTTCTCAGCG
AACTGGGTATGAATCTTAGTCATTCGCACTCAGAGTCAGCTCTTCAAGAG
GCCATGTCCGCTGTCGAAGACTATAGTAAAAAAGCAATTGCAGCCAGGAG
AATTATGGAAAGCTTTCATGGTTCCAGATTGAGGATAAACGGGTCAATTT
CTGCCGTCGGGGTAAGTGAAATGCCATCAAGGGCGTCAGTATACGTCAAA
GTTTCGCGGGTGACGTTGATAGATGAAACAGTTCTTCACGTGGTGTCTAG
CAACACAAACGATATTCTTGCTGGGGATGGTTTCTACAACGAGCTTCCCA
TAGTAGACATTGATTCTGACATTATTCAGGAGGTAGAGGGTAACCCCCTA
CTTCTCTAG
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protein sequence of Gchil356.t1

>Gchil356.t1 ID=Gchil356.t1|Name=Gchil356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=253bp
MNVLQKLLLYVIVLSTAAICACGNSSPRQLSMVKRVENFHHEIRQAVSVD
EERNSSVLQDFTLFFGPIGQGVINVRSGLSASFRFDYRIQGVTSRYLAES
DQVFRSSLDQHEKILYDESKRRYDGGLDIPFLSELGMNLSHSHSESALQE
AMSAVEDYSKKAIAARRIMESFHGSRLRINGSISAVGVSEMPSRASVYVK
VSRVTLIDETVLHVVSSNTNDILAGDGFYNELPIVDIDSDIIQEVEGNPL
LL*
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mRNA from alignment at tig00000212_pilon:531621..532379+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil356.t1 ID=Gchil356.t1|Name=Gchil356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000212_pilon:531621..532379+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATGTCCTACAAAAGCTCCTGCTGTACGTCATTGTTCTTTCTACAGC
CGCAATCTGCGCATGCGGCAATTCAAGTCCCAGACAGCTTTCCATGGTAA
AGAGAGTTGAAAATTTTCATCATGAAATTCGACAAGCAGTAAGCGTCGAT
GAAGAACGAAACAGTTCTGTCCTGCAAGATTTCACACTATTTTTTGGACC
GATTGGACAGGGAGTCATTAACGTTAGATCGGGGTTATCAGCGTCTTTCA
GATTCGATTATCGAATTCAAGGCGTAACATCTCGCTATCTCGCTGAAAGT
GATCAGGTTTTCCGGTCAAGTCTTGACCAGCACGAAAAAATTCTTTACGA
TGAAAGCAAACGGAGATATGATGGAGGTTTGGACATACCCTTTCTCAGCG
AACTGGGTATGAATCTTAGTCATTCGCACTCAGAGTCAGCTCTTCAAGAG
GCCATGTCCGCTGTCGAAGACTATAGTAAAAAAGCAATTGCAGCCAGGAG
AATTATGGAAAGCTTTCATGGTTCCAGATTGAGGATAAACGGGTCAATTT
CTGCCGTCGGGGTAAGTGAAATGCCATCAAGGGCGTCAGTATACGTCAAA
GTTTCGCGGGTGACGTTGATAGATGAAACAGTTCTTCACGTGGTGTCTAG
CAACACAAACGATATTCTTGCTGGGGATGGTTTCTACAACGAGCTTCCCA
TAGTAGACATTGATTCTGACATTATTCAGGAGGTAGAGGGTAACCCCCTA
CTTCTCTAG
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Coding sequence (CDS) from alignment at tig00000212_pilon:531621..532379+

>Gchil356.t1 ID=Gchil356.t1|Name=Gchil356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00000212_pilon:531621..532379+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATGTCCTACAAAAGCTCCTGCTGTACGTCATTGTTCTTTCTACAGC
CGCAATCTGCGCATGCGGCAATTCAAGTCCCAGACAGCTTTCCATGGTAA
AGAGAGTTGAAAATTTTCATCATGAAATTCGACAAGCAGTAAGCGTCGAT
GAAGAACGAAACAGTTCTGTCCTGCAAGATTTCACACTATTTTTTGGACC
GATTGGACAGGGAGTCATTAACGTTAGATCGGGGTTATCAGCGTCTTTCA
GATTCGATTATCGAATTCAAGGCGTAACATCTCGCTATCTCGCTGAAAGT
GATCAGGTTTTCCGGTCAAGTCTTGACCAGCACGAAAAAATTCTTTACGA
TGAAAGCAAACGGAGATATGATGGAGGTTTGGACATACCCTTTCTCAGCG
AACTGGGTATGAATCTTAGTCATTCGCACTCAGAGTCAGCTCTTCAAGAG
GCCATGTCCGCTGTCGAAGACTATAGTAAAAAAGCAATTGCAGCCAGGAG
AATTATGGAAAGCTTTCATGGTTCCAGATTGAGGATAAACGGGTCAATTT
CTGCCGTCGGGGTAAGTGAAATGCCATCAAGGGCGTCAGTATACGTCAAA
GTTTCGCGGGTGACGTTGATAGATGAAACAGTTCTTCACGTGGTGTCTAG
CAACACAAACGATATTCTTGCTGGGGATGGTTTCTACAACGAGCTTCCCA
TAGTAGACATTGATTCTGACATTATTCAGGAGGTAGAGGGTAACCCCCTA
CTTCTCTAG
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