Gchil3508.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3508.t1
Unique Name	Gchil3508.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	476

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:658412..659839 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708244.1
Preferred name	SF3A3
PFAMs	DUF3449,PRP9_N,SF3A3,SF3a60_bindingd,Telomere_Sde2_2,zf-C2H2_jaz,zf-met
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00005,RC00443
KEGG ko	ko:K01676,ko:K10777,ko:K12827
KEGG Reaction	R00381,R01082
KEGG Pathway	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko03040,ko03450,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map03040,map03450
KEGG Module	M00009,M00011,M00173,M00352,M00374
GOs	GO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000389,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009566,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043900,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045292,GO:0045595,GO:0045694,GO:0046483,GO:0050789,GO:0050793,GO:0050794,GO:0051239,GO:0051704,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904,GO:2000026,GO:2000241
Evalue	2.71e-73
EggNOG OGs	COG5188@1\|root,KOG2636@2759\|Eukaryota
EC	4.2.1.2,6.5.1.1
Description	mRNA splicing, via spliceosome
COG category	A
BRITE	ko00000,ko00001,ko00002,ko01000,ko03041,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3508	Gchil3508	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 658412..659839 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3508.t1.start1	Gchil3508.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 658412..658414 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3508.t1.CDS1	Gchil3508.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 658412..659839 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3508.t1.exon1	Gchil3508.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 658412..659839 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3508.t1.stop1	Gchil3508.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 659837..659839 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3508.t1	Gchil3508.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 658412..659839 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:658412..659839+
coding sequence from alignment at tig00004378_pilon:658412..659839+

mRNA sequence

>Gchil3508.t1 ID=Gchil3508.t1|Name=Gchil3508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=476bp
MGGGEEAEPPQQQLERLRQLHEDVETLTRLAAAALHSRSTPATPHRRLAA
AHAPLRCARDAEQLAADLVALAASRAAALRAYYRRPLPLPPSDPLSSFYA
RLRDLRDAHRARDLSAALSVDHALVLEAYHPPAFSGEECHGRFLDLLQHY
ASFLNLTQHKSVVEYDQYVREHVCAFSAVPPAVRTSRPYQTYLSTLLSYL
TDFARRAHPLDHTDAHLSSAHDHARRQIEHSLSQIAATYPTYEQLLQHHS
PQHLRDRLLQFALKCGGRPQDRAKRLLTAAREVKYGRAAVLERVLSFALD
KLLAPERAATVANIQKRLALSYPEIEAERRAMDALADAVELHDVDQAETT
VYNPKDLPLGWDGKPIPYWMYKLHGLNHEFRCEICGNATYKGPRAFERHF
TDTQHVQGLRRLGIGYSKAFMMITKIDDVLKLHDKMHKSQRHAKFDEDKE
MEFEDRHGNVMNRKTYHDLLRQGLV*

spliced messenger RNA

>Gchil3508.t1 ID=Gchil3508.t1|Name=Gchil3508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00004378_pilon:658412..659839+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGCGGCGAAGAGGCCGAACCGCCGCAGCAGCAGCTGGAGAGGCT
GCGCCAGCTGCACGAGGACGTCGAGACGCTCACGCGGCTGGCGGCCGCCG
CGCTACACTCGCGTTCCACGCCCGCCACGCCGCACCGTCGCCTTGCCGCC
GCACACGCGCCGCTGCGTTGCGCCCGCGACGCCGAGCAGCTCGCCGCCGA
TCTCGTCGCGCTTGCTGCGTCACGCGCCGCCGCCCTTCGCGCCTACTACC
GTCGTCCGCTCCCACTCCCCCCTTCCGACCCGCTTTCCTCCTTCTATGCC
CGTCTGCGCGACTTGCGCGATGCGCATCGCGCCCGCGATCTGTCTGCCGC
TCTTTCTGTCGACCATGCGCTCGTGCTGGAGGCCTACCACCCGCCCGCCT
TCTCTGGCGAAGAGTGTCACGGTAGGTTTCTCGACCTGTTGCAGCACTAT
GCCTCCTTTCTCAACTTGACTCAACACAAGTCTGTCGTCGAATATGATCA
GTACGTGCGTGAGCACGTCTGTGCTTTCTCCGCCGTTCCACCGGCCGTGC
GCACCTCGCGACCGTACCAAACGTATCTCTCCACTTTGCTCTCGTATCTC
ACCGACTTTGCTCGCAGGGCCCATCCACTGGACCACACTGACGCCCATCT
TTCGAGCGCTCACGACCACGCCCGCCGCCAGATTGAGCACTCTTTATCTC
AAATTGCTGCAACTTACCCCACATACGAACAGCTTTTGCAGCACCACTCG
CCGCAACACCTTCGTGATCGCCTCCTGCAGTTTGCCCTCAAGTGCGGAGG
ACGTCCGCAAGACCGCGCAAAACGACTCCTCACTGCTGCCCGAGAAGTCA
AGTACGGACGCGCCGCCGTGTTGGAACGCGTTTTGTCGTTTGCTTTGGAC
AAGCTCTTGGCGCCGGAGCGTGCCGCCACTGTAGCAAACATCCAGAAGCG
ACTGGCATTGAGCTATCCTGAGATTGAGGCTGAGCGTCGTGCCATGGACG
CACTGGCCGACGCTGTTGAGTTGCACGATGTTGACCAAGCGGAGACCACT
GTGTACAACCCCAAAGATCTACCGCTTGGTTGGGATGGAAAGCCGATACC
CTACTGGATGTACAAATTGCATGGCCTCAATCACGAATTTCGTTGTGAGA
TCTGTGGTAATGCTACTTACAAGGGTCCCCGCGCGTTTGAGCGCCACTTC
ACTgatactcaacacgttcagggcctgaggcgactgggtattggctactc
caaggccttcatgatgatcactaagattgatgacgtcttgaagcttcatg
acaaaatgcacaaatcccaacgacatgccaagtttgacgaagataaagaa
atggaatttgaggaccgtcacggcaatgtgATGAATCGGAAGACCTATCA
TGATTTGCTGCGTCAAGGATTGGTGTGA

protein sequence of Gchil3508.t1

>Gchil3508.t1 ID=Gchil3508.t1|Name=Gchil3508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=476bp
MGGGEEAEPPQQQLERLRQLHEDVETLTRLAAAALHSRSTPATPHRRLAA
AHAPLRCARDAEQLAADLVALAASRAAALRAYYRRPLPLPPSDPLSSFYA
RLRDLRDAHRARDLSAALSVDHALVLEAYHPPAFSGEECHGRFLDLLQHY
ASFLNLTQHKSVVEYDQYVREHVCAFSAVPPAVRTSRPYQTYLSTLLSYL
TDFARRAHPLDHTDAHLSSAHDHARRQIEHSLSQIAATYPTYEQLLQHHS
PQHLRDRLLQFALKCGGRPQDRAKRLLTAAREVKYGRAAVLERVLSFALD
KLLAPERAATVANIQKRLALSYPEIEAERRAMDALADAVELHDVDQAETT
VYNPKDLPLGWDGKPIPYWMYKLHGLNHEFRCEICGNATYKGPRAFERHF
TDTQHVQGLRRLGIGYSKAFMMITKIDDVLKLHDKMHKSQRHAKFDEDKE
MEFEDRHGNVMNRKTYHDLLRQGLV*

mRNA from alignment at tig00004378_pilon:658412..659839+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3508.t1 ID=Gchil3508.t1|Name=Gchil3508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00004378_pilon:658412..659839+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGGCGGCGAAGAGGCCGAACCGCCGCAGCAGCAGCTGGAGAGGCT
GCGCCAGCTGCACGAGGACGTCGAGACGCTCACGCGGCTGGCGGCCGCCG
CGCTACACTCGCGTTCCACGCCCGCCACGCCGCACCGTCGCCTTGCCGCC
GCACACGCGCCGCTGCGTTGCGCCCGCGACGCCGAGCAGCTCGCCGCCGA
TCTCGTCGCGCTTGCTGCGTCACGCGCCGCCGCCCTTCGCGCCTACTACC
GTCGTCCGCTCCCACTCCCCCCTTCCGACCCGCTTTCCTCCTTCTATGCC
CGTCTGCGCGACTTGCGCGATGCGCATCGCGCCCGCGATCTGTCTGCCGC
TCTTTCTGTCGACCATGCGCTCGTGCTGGAGGCCTACCACCCGCCCGCCT
TCTCTGGCGAAGAGTGTCACGGTAGGTTTCTCGACCTGTTGCAGCACTAT
GCCTCCTTTCTCAACTTGACTCAACACAAGTCTGTCGTCGAATATGATCA
GTACGTGCGTGAGCACGTCTGTGCTTTCTCCGCCGTTCCACCGGCCGTGC
GCACCTCGCGACCGTACCAAACGTATCTCTCCACTTTGCTCTCGTATCTC
ACCGACTTTGCTCGCAGGGCCCATCCACTGGACCACACTGACGCCCATCT
TTCGAGCGCTCACGACCACGCCCGCCGCCAGATTGAGCACTCTTTATCTC
AAATTGCTGCAACTTACCCCACATACGAACAGCTTTTGCAGCACCACTCG
CCGCAACACCTTCGTGATCGCCTCCTGCAGTTTGCCCTCAAGTGCGGAGG
ACGTCCGCAAGACCGCGCAAAACGACTCCTCACTGCTGCCCGAGAAGTCA
AGTACGGACGCGCCGCCGTGTTGGAACGCGTTTTGTCGTTTGCTTTGGAC
AAGCTCTTGGCGCCGGAGCGTGCCGCCACTGTAGCAAACATCCAGAAGCG
ACTGGCATTGAGCTATCCTGAGATTGAGGCTGAGCGTCGTGCCATGGACG
CACTGGCCGACGCTGTTGAGTTGCACGATGTTGACCAAGCGGAGACCACT
GTGTACAACCCCAAAGATCTACCGCTTGGTTGGGATGGAAAGCCGATACC
CTACTGGATGTACAAATTGCATGGCCTCAATCACGAATTTCGTTGTGAGA
TCTGTGGTAATGCTACTTACAAGGGTCCCCGCGCGTTTGAGCGCCACTTC
ACTgatactcaacacgttcagggcctgaggcgactgggtattggctactc
caaggccttcatgatgatcactaagattgatgacgtcttgaagcttcatg
acaaaatgcacaaatcccaacgacatgccaagtttgacgaagataaagaa
atggaatttgaggaccgtcacggcaatgtgATGAATCGGAAGACCTATCA
TGATTTGCTGCGTCAAGGATTGGTGTGA

Coding sequence (CDS) from alignment at tig00004378_pilon:658412..659839+

>Gchil3508.t1 ID=Gchil3508.t1|Name=Gchil3508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1428bp|location=Sequence derived from alignment at tig00004378_pilon:658412..659839+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGGCGGCGAAGAGGCCGAACCGCCGCAGCAGCAGCTGGAGAGGCT
GCGCCAGCTGCACGAGGACGTCGAGACGCTCACGCGGCTGGCGGCCGCCG
CGCTACACTCGCGTTCCACGCCCGCCACGCCGCACCGTCGCCTTGCCGCC
GCACACGCGCCGCTGCGTTGCGCCCGCGACGCCGAGCAGCTCGCCGCCGA
TCTCGTCGCGCTTGCTGCGTCACGCGCCGCCGCCCTTCGCGCCTACTACC
GTCGTCCGCTCCCACTCCCCCCTTCCGACCCGCTTTCCTCCTTCTATGCC
CGTCTGCGCGACTTGCGCGATGCGCATCGCGCCCGCGATCTGTCTGCCGC
TCTTTCTGTCGACCATGCGCTCGTGCTGGAGGCCTACCACCCGCCCGCCT
TCTCTGGCGAAGAGTGTCACGGTAGGTTTCTCGACCTGTTGCAGCACTAT
GCCTCCTTTCTCAACTTGACTCAACACAAGTCTGTCGTCGAATATGATCA
GTACGTGCGTGAGCACGTCTGTGCTTTCTCCGCCGTTCCACCGGCCGTGC
GCACCTCGCGACCGTACCAAACGTATCTCTCCACTTTGCTCTCGTATCTC
ACCGACTTTGCTCGCAGGGCCCATCCACTGGACCACACTGACGCCCATCT
TTCGAGCGCTCACGACCACGCCCGCCGCCAGATTGAGCACTCTTTATCTC
AAATTGCTGCAACTTACCCCACATACGAACAGCTTTTGCAGCACCACTCG
CCGCAACACCTTCGTGATCGCCTCCTGCAGTTTGCCCTCAAGTGCGGAGG
ACGTCCGCAAGACCGCGCAAAACGACTCCTCACTGCTGCCCGAGAAGTCA
AGTACGGACGCGCCGCCGTGTTGGAACGCGTTTTGTCGTTTGCTTTGGAC
AAGCTCTTGGCGCCGGAGCGTGCCGCCACTGTAGCAAACATCCAGAAGCG
ACTGGCATTGAGCTATCCTGAGATTGAGGCTGAGCGTCGTGCCATGGACG
CACTGGCCGACGCTGTTGAGTTGCACGATGTTGACCAAGCGGAGACCACT
GTGTACAACCCCAAAGATCTACCGCTTGGTTGGGATGGAAAGCCGATACC
CTACTGGATGTACAAATTGCATGGCCTCAATCACGAATTTCGTTGTGAGA
TCTGTGGTAATGCTACTTACAAGGGTCCCCGCGCGTTTGAGCGCCACTTC
ACTgatactcaacacgttcagggcctgaggcgactgggtattggctactc
caaggccttcatgatgatcactaagattgatgacgtcttgaagcttcatg
acaaaatgcacaaatcccaacgacatgccaagtttgacgaagataaagaa
atggaatttgaggaccgtcacggcaatgtgATGAATCGGAAGACCTATCA
TGATTTGCTGCGTCAAGGATTGGTGTGA