Gchil3501.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3501.t1
Unique NameGchil3501.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length624
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:642494..644365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3501Gchil3501Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 642494..644365 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3501.t1.stop1Gchil3501.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 642494..642496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3501.t1.CDS1Gchil3501.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 642494..644365 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3501.t1.exon1Gchil3501.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 642494..644365 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3501.t1.start1Gchil3501.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 644363..644365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3501.t1Gchil3501.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 642494..644365 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3501.t1 ID=Gchil3501.t1|Name=Gchil3501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=624bp
MQTAYVLERYRRLFGSLSHLSFTLSNSDISAAQQAANTSETWQSHYLSPS
SVNLRRALSHALLDSISIRHSDNPRYEPDVGIMEGDDGGYTTPASLFQDE
TIADPSLPCYTLLGEPASQTSSSVSSSQFESISTVLLAEKALEQLSECVH
SSSTDSQVCAPLLSELQAIVTNARMRELRQPDHLANSLHALIDKQKPPAP
IRQQLEASVTTARKCAQACRERTLILSQADALLTGLLSASEFKSLHTSGT
NVHPPRKRPRAPIFPNPAPFPAPPASLEEILGPTHPIAKNVYCLRRFHSW
RSTVVGKVMERRRNPIAKKENIISQISPRAKSPRLRVKKGRKDVVEIFND
AERTALSTPQDRYDAMTRSACALLLAHAGYSHITANAMNLLADIVEEFIM
QIGSSLCTVRENVDKGLDADIQSEERGRRKTAAERIDEYKIICESGARGS
ILELVYYVKCDSQRVSYRVREAEKRLEHQVLNDKIGAALFQDPEEVKAID
ATVRAELTNEPGPNDIKFGVKGQDAPITEEDVKLDGEPFILGYLCESVRL
DVLGGITVPARVVYRKKTSNKDGIASGRIEKVQRAPRPKNKGPSLQTAST
SSVPIASVSPVKAEVKLLDTGEG*
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spliced messenger RNA

>Gchil3501.t1 ID=Gchil3501.t1|Name=Gchil3501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1872bp|location=Sequence derived from alignment at tig00004378_pilon:642494..644365- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGACTGCCTACGTACTGGAGCGATACCGCCGCCTGTTTGGTTCTTT
GTCACACTTGTCATTCACTTTATCTAACTCCGATATTTCAGCAGCGCAGC
AAGCAGCAAATACTTCAGAAACGTGGCAGAGTCATTACCTCTCTCCTTCA
AGCGTTAATCTGCGCCGTGCGCTGTCCCACGCTCTGTTGGACTCCATTTC
CATCCGCCATTCAGACAACCCAAGGTATGAGCCCGATGTAGGAATCATGG
AAGGTGATGATGGCGGTTACACCACACCAGCTTCCCTGTTTCAGGATGAG
ACCATAGCTGATCCCTCGCTGCCCTGTTACACTTTACTTGGGGAACCCGC
TTCTCAGACATCATCATCTGTTTCTTCGTCCCAGTTCGAGTCAATTTCAA
CTGTGCTTCTCGCAGAAAAGGCACTTGAACAGCTCTCAGAGTGCGTGCAT
TCGTCGTCTACTGACAGCCAAGTGTGTGCACCACTACTTTCCGAGCTGCA
AGCAATTGTGACTAATGCGCGAATGAGAGAGCTTCGCCAGCCGGATCACC
TTGCAAACTCTCTACACGCTTTAATTGACAAACAGAAACCGCCTGCCCCA
ATACGGCAACAATTGGAAGCTTCAGTCACCACTGCCAGAAAATGCGCACA
AGCCTGTCGTGAACGAACTCTCATCCTGTCGCAAGCTGACGCCTTGCTAA
CCGGACTCCTGTCCGCCAGTGAGTTCAAGTCGTTGCATACATCCGGAACA
AATGTGCATCCGCCTCGTAAGCGTCCTCGCGCTCCTATTTTTCCGAACCC
CGCCCCTTTTCCTGCTCCACCGGCTTCACTAGAAGAGATTTTGGGACCTA
CCCATCCCATCGCCAAAAATGTTTATTGTTTGCGTCGTTTTCATTCATGG
CGTTCAACGGTCGTGGGTAAAGTTATGGAGAGGCGAAGAAACCCAATTGC
AAAAAAGGAAAATATCATATCGCAAATTAGTCCTCGTGCGAAGAGTCCGC
GACTGCGAGTCAAAAAGGGACGTAAAGACGTTGTAGAAATCTTCAATGAT
GCGGAGCGTACAGCTCTCTCCACCCCTCAAGATCGATATGACGCTATGAC
TCGTTCTGCTTGTGCTCTACTGTTGGCACACGCTGGGTATTCACATATCA
CCGCGAACGCAATGAACCTCTTGGCAGACATTGTTGAAGAGTTTATCATG
CAAATTGGTTCCAGCTTATGCACAGTCCGAGAAAACGTAGACAAAGGTTT
GGACGCCGATATACAGTCTGAAGAGAGAGGAAGGCGAAAAACTGCTGCAG
AGAGAATTGACGAATATAAGATTATATGCGAATCGGGTGCAAGGGGCAGC
ATCCTTGAGTTGGTGTATTATGTGAAATGCGACAGCCAACGTGTTTCTTA
CAGAGTGAGAGAGGCAGAAAAACGACTTGAACATCAAGTGCTCAACGACA
AGATAGGTGCTGCACTCTTTCAAGACCCTGAGGAGGTTAAGGCTATTGAC
GCTACCGTGCGTGCGGAGCTTACGAATGAGCCAGGACCCAATGACATCAA
ATTTGGCGTAAAAGGGCAGGATGCACCCATAACGGAAGAAGATGTGAAGT
TAGACGGCGAACCATTTATCCTGGGCTATCTCTGTGAATCTGTTCGTTTG
GATGTTCTTGGGGGCATTACGGTTCCCGCACGTGTTGTATACCGTAAAAA
GACCTCCAATAAGGACGGTATTGCAAGTGGTAGGATTGAAAAAGTTCAAC
GGGCGCCCCGGCCGAAAAACAAAGGCCCATCTTTGCAAACCGCGTCTACT
TCTTCAGTTCCAATAGCTTCTGTTTCACCAGTGAAGGCAGAAGTGAAGTT
GTTAGATACAGGTGAGGGATAA
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protein sequence of Gchil3501.t1

>Gchil3501.t1 ID=Gchil3501.t1|Name=Gchil3501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=624bp
MQTAYVLERYRRLFGSLSHLSFTLSNSDISAAQQAANTSETWQSHYLSPS
SVNLRRALSHALLDSISIRHSDNPRYEPDVGIMEGDDGGYTTPASLFQDE
TIADPSLPCYTLLGEPASQTSSSVSSSQFESISTVLLAEKALEQLSECVH
SSSTDSQVCAPLLSELQAIVTNARMRELRQPDHLANSLHALIDKQKPPAP
IRQQLEASVTTARKCAQACRERTLILSQADALLTGLLSASEFKSLHTSGT
NVHPPRKRPRAPIFPNPAPFPAPPASLEEILGPTHPIAKNVYCLRRFHSW
RSTVVGKVMERRRNPIAKKENIISQISPRAKSPRLRVKKGRKDVVEIFND
AERTALSTPQDRYDAMTRSACALLLAHAGYSHITANAMNLLADIVEEFIM
QIGSSLCTVRENVDKGLDADIQSEERGRRKTAAERIDEYKIICESGARGS
ILELVYYVKCDSQRVSYRVREAEKRLEHQVLNDKIGAALFQDPEEVKAID
ATVRAELTNEPGPNDIKFGVKGQDAPITEEDVKLDGEPFILGYLCESVRL
DVLGGITVPARVVYRKKTSNKDGIASGRIEKVQRAPRPKNKGPSLQTAST
SSVPIASVSPVKAEVKLLDTGEG*
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mRNA from alignment at tig00004378_pilon:642494..644365-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3501.t1 ID=Gchil3501.t1|Name=Gchil3501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1872bp|location=Sequence derived from alignment at tig00004378_pilon:642494..644365- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGACTGCCTACGTACTGGAGCGATACCGCCGCCTGTTTGGTTCTTT
GTCACACTTGTCATTCACTTTATCTAACTCCGATATTTCAGCAGCGCAGC
AAGCAGCAAATACTTCAGAAACGTGGCAGAGTCATTACCTCTCTCCTTCA
AGCGTTAATCTGCGCCGTGCGCTGTCCCACGCTCTGTTGGACTCCATTTC
CATCCGCCATTCAGACAACCCAAGGTATGAGCCCGATGTAGGAATCATGG
AAGGTGATGATGGCGGTTACACCACACCAGCTTCCCTGTTTCAGGATGAG
ACCATAGCTGATCCCTCGCTGCCCTGTTACACTTTACTTGGGGAACCCGC
TTCTCAGACATCATCATCTGTTTCTTCGTCCCAGTTCGAGTCAATTTCAA
CTGTGCTTCTCGCAGAAAAGGCACTTGAACAGCTCTCAGAGTGCGTGCAT
TCGTCGTCTACTGACAGCCAAGTGTGTGCACCACTACTTTCCGAGCTGCA
AGCAATTGTGACTAATGCGCGAATGAGAGAGCTTCGCCAGCCGGATCACC
TTGCAAACTCTCTACACGCTTTAATTGACAAACAGAAACCGCCTGCCCCA
ATACGGCAACAATTGGAAGCTTCAGTCACCACTGCCAGAAAATGCGCACA
AGCCTGTCGTGAACGAACTCTCATCCTGTCGCAAGCTGACGCCTTGCTAA
CCGGACTCCTGTCCGCCAGTGAGTTCAAGTCGTTGCATACATCCGGAACA
AATGTGCATCCGCCTCGTAAGCGTCCTCGCGCTCCTATTTTTCCGAACCC
CGCCCCTTTTCCTGCTCCACCGGCTTCACTAGAAGAGATTTTGGGACCTA
CCCATCCCATCGCCAAAAATGTTTATTGTTTGCGTCGTTTTCATTCATGG
CGTTCAACGGTCGTGGGTAAAGTTATGGAGAGGCGAAGAAACCCAATTGC
AAAAAAGGAAAATATCATATCGCAAATTAGTCCTCGTGCGAAGAGTCCGC
GACTGCGAGTCAAAAAGGGACGTAAAGACGTTGTAGAAATCTTCAATGAT
GCGGAGCGTACAGCTCTCTCCACCCCTCAAGATCGATATGACGCTATGAC
TCGTTCTGCTTGTGCTCTACTGTTGGCACACGCTGGGTATTCACATATCA
CCGCGAACGCAATGAACCTCTTGGCAGACATTGTTGAAGAGTTTATCATG
CAAATTGGTTCCAGCTTATGCACAGTCCGAGAAAACGTAGACAAAGGTTT
GGACGCCGATATACAGTCTGAAGAGAGAGGAAGGCGAAAAACTGCTGCAG
AGAGAATTGACGAATATAAGATTATATGCGAATCGGGTGCAAGGGGCAGC
ATCCTTGAGTTGGTGTATTATGTGAAATGCGACAGCCAACGTGTTTCTTA
CAGAGTGAGAGAGGCAGAAAAACGACTTGAACATCAAGTGCTCAACGACA
AGATAGGTGCTGCACTCTTTCAAGACCCTGAGGAGGTTAAGGCTATTGAC
GCTACCGTGCGTGCGGAGCTTACGAATGAGCCAGGACCCAATGACATCAA
ATTTGGCGTAAAAGGGCAGGATGCACCCATAACGGAAGAAGATGTGAAGT
TAGACGGCGAACCATTTATCCTGGGCTATCTCTGTGAATCTGTTCGTTTG
GATGTTCTTGGGGGCATTACGGTTCCCGCACGTGTTGTATACCGTAAAAA
GACCTCCAATAAGGACGGTATTGCAAGTGGTAGGATTGAAAAAGTTCAAC
GGGCGCCCCGGCCGAAAAACAAAGGCCCATCTTTGCAAACCGCGTCTACT
TCTTCAGTTCCAATAGCTTCTGTTTCACCAGTGAAGGCAGAAGTGAAGTT
GTTAGATACAGGTGAGGGATAA
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Coding sequence (CDS) from alignment at tig00004378_pilon:642494..644365-

>Gchil3501.t1 ID=Gchil3501.t1|Name=Gchil3501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1872bp|location=Sequence derived from alignment at tig00004378_pilon:642494..644365- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGACTGCCTACGTACTGGAGCGATACCGCCGCCTGTTTGGTTCTTT
GTCACACTTGTCATTCACTTTATCTAACTCCGATATTTCAGCAGCGCAGC
AAGCAGCAAATACTTCAGAAACGTGGCAGAGTCATTACCTCTCTCCTTCA
AGCGTTAATCTGCGCCGTGCGCTGTCCCACGCTCTGTTGGACTCCATTTC
CATCCGCCATTCAGACAACCCAAGGTATGAGCCCGATGTAGGAATCATGG
AAGGTGATGATGGCGGTTACACCACACCAGCTTCCCTGTTTCAGGATGAG
ACCATAGCTGATCCCTCGCTGCCCTGTTACACTTTACTTGGGGAACCCGC
TTCTCAGACATCATCATCTGTTTCTTCGTCCCAGTTCGAGTCAATTTCAA
CTGTGCTTCTCGCAGAAAAGGCACTTGAACAGCTCTCAGAGTGCGTGCAT
TCGTCGTCTACTGACAGCCAAGTGTGTGCACCACTACTTTCCGAGCTGCA
AGCAATTGTGACTAATGCGCGAATGAGAGAGCTTCGCCAGCCGGATCACC
TTGCAAACTCTCTACACGCTTTAATTGACAAACAGAAACCGCCTGCCCCA
ATACGGCAACAATTGGAAGCTTCAGTCACCACTGCCAGAAAATGCGCACA
AGCCTGTCGTGAACGAACTCTCATCCTGTCGCAAGCTGACGCCTTGCTAA
CCGGACTCCTGTCCGCCAGTGAGTTCAAGTCGTTGCATACATCCGGAACA
AATGTGCATCCGCCTCGTAAGCGTCCTCGCGCTCCTATTTTTCCGAACCC
CGCCCCTTTTCCTGCTCCACCGGCTTCACTAGAAGAGATTTTGGGACCTA
CCCATCCCATCGCCAAAAATGTTTATTGTTTGCGTCGTTTTCATTCATGG
CGTTCAACGGTCGTGGGTAAAGTTATGGAGAGGCGAAGAAACCCAATTGC
AAAAAAGGAAAATATCATATCGCAAATTAGTCCTCGTGCGAAGAGTCCGC
GACTGCGAGTCAAAAAGGGACGTAAAGACGTTGTAGAAATCTTCAATGAT
GCGGAGCGTACAGCTCTCTCCACCCCTCAAGATCGATATGACGCTATGAC
TCGTTCTGCTTGTGCTCTACTGTTGGCACACGCTGGGTATTCACATATCA
CCGCGAACGCAATGAACCTCTTGGCAGACATTGTTGAAGAGTTTATCATG
CAAATTGGTTCCAGCTTATGCACAGTCCGAGAAAACGTAGACAAAGGTTT
GGACGCCGATATACAGTCTGAAGAGAGAGGAAGGCGAAAAACTGCTGCAG
AGAGAATTGACGAATATAAGATTATATGCGAATCGGGTGCAAGGGGCAGC
ATCCTTGAGTTGGTGTATTATGTGAAATGCGACAGCCAACGTGTTTCTTA
CAGAGTGAGAGAGGCAGAAAAACGACTTGAACATCAAGTGCTCAACGACA
AGATAGGTGCTGCACTCTTTCAAGACCCTGAGGAGGTTAAGGCTATTGAC
GCTACCGTGCGTGCGGAGCTTACGAATGAGCCAGGACCCAATGACATCAA
ATTTGGCGTAAAAGGGCAGGATGCACCCATAACGGAAGAAGATGTGAAGT
TAGACGGCGAACCATTTATCCTGGGCTATCTCTGTGAATCTGTTCGTTTG
GATGTTCTTGGGGGCATTACGGTTCCCGCACGTGTTGTATACCGTAAAAA
GACCTCCAATAAGGACGGTATTGCAAGTGGTAGGATTGAAAAAGTTCAAC
GGGCGCCCCGGCCGAAAAACAAAGGCCCATCTTTGCAAACCGCGTCTACT
TCTTCAGTTCCAATAGCTTCTGTTTCACCAGTGAAGGCAGAAGTGAAGTT
GTTAGATACAGGTGAGGGATAA
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